嗜热菌对有机污染物的降解及其应用研究进展

有机污染物造成的环境问题日趋严重,嗜热菌具有高效降解环境有机污染物的潜力.嗜热菌在高温条件下降解有机污染物,代谢速度快,嗜温杂菌的竞争减少,同时高温环境下一些难降解有机物的溶解度和生物可利用性大大提高,有机污染物可得到快速、彻底降解.因此,嗜热菌对有机废水生物处理及有机物污染场地生物修复等意义重大.本文从嗜热菌降解有机污染物的特点、温度的影响、降解途径、降解酶及其编码基因及工程应用等角度,介绍了嗜热菌降解有机污染物的研究进展,并对嗜热菌降解有机污染物的机理、菌种资源储备、技术策略及应用研发等研究方向进行了展望.     

常温环境中产嗜热蛋白酶菌资源

通过计数、分离与筛选,对常温环境嗜热菌和产嗜热蛋白酶菌的分布及资源状况进行了研究。结果表明,常温环境中存在着一定数量的嗜热菌和产嗜热蛋白酶菌。土壤与水体相比,其嗜热菌资源相对丰富,且耕作肥沃的土壤中产嗜热蛋白酶菌多于贫瘠土壤;在水环境中,无论湖水、江水还是处理中的废水,在常温条件下均有一定比例的嗜热菌和产嗜热蛋白酶菌。在啤酒废水曝气阶段,产嗜热蛋白酶菌占嗜热菌的比例较大,达45％。本研究筛选的1株嗜热菌其产嗜热蛋白酶活性较高,该菌株在pH7．6、温度68℃条件下其蛋白酶活力达到642U·ml^-1。该项研究为开发产嗜热蛋白酶菌资源,在工业和环境治理等方面的应用提供重要科学依据。     

极端嗜热菌的酶应用进展

极端嗜热菌一般在６０℃以上的环境中生长,其研究历史已持续一百多年。极端嗜热菌所产生的酶,因其耐高温（５０℃─９４℃）,酶活力性能稳定,已被广泛应用在聚合酶链反应,糖发酵,以及蛋白质、淀粉、纤维素和脂肪的分解等工艺技术方面,显示出了可喜的苗头。有关极端嗜热菌的基因结构及其嗜热机理正在探索之中,可以预见人们将采用酶工程技术,开发出更多的嗜热菌酶制剂市场。     

嗜热菌的耐热分子机制

对嗜热菌耐热机制在其细胞表层结构、ＤＮＡ螺旋的热稳定性和嗜热菌酶耐热性等方面的研究作一综述。     

嗜热菌耐热机理的研究进展

只在55℃以上的环境中生长的微生物叫嗜热菌。从嗜热菌细胞膜的组成、酶的热稳定性,以及DNA、RNA的耐热机理等方面予以综述,介绍国内外近年来的研究进展。     

小分子封闭提高固定化嗜热菌蛋白酶的热稳定性

为了提高固定化嗜热菌蛋白酶的热稳定性,在制备共价固定化嗜热菌蛋白酶的基础上,通过选择氨基酸和醇类小分子来封闭载体表面未反应的活化基团,并考察了固定化酶的催化活性及热稳定性。结果发现：L-Trp和L-Val封闭修饰固定化酶时,在80℃的水浴中加热150 min后其剩余活力仍为93.4%和98.6%,其效果约为未经小分子封闭的固定化嗜热菌蛋白酶的2倍。所筛选的几种小分子物质中,叔戊醇、L-Trp、L-Val及L-Ala不仅能提高固定化嗜热菌蛋白酶的热稳定性,而且也可以提高固定化酶的相对活力,从而更有利于其在工业生产中的应用。     

一种有效的嗜热真菌杜邦嗜热菌靶向基因替代系统

以嗜热真菌杜邦嗜热菌Thermomyces dupontii NRRL 2155为研究材料,利用同源重组原理和真菌原生质体转化方法,以潮霉素抗性基因替换嗜热真菌目标基因,获得抗潮霉素的靶向基因敲除突变菌株。优化的遗传转化体系为：用15mg/mL裂解酶,在28℃下酶解2g杜邦嗜热菌菌丝5.5h以获得原生质体,经STC缓冲液洗涤重悬后,利用PEG（polyethylene glycol）介导的遗传转化方式,将10μg线性敲除全长片段转化至杜邦嗜热菌原生质体中,通过潮霉素筛选及PCR验证得到基因替换突变菌株,同源重组率达到20%。本研究首次将原生质体转化方法应用在杜邦嗜热菌,并成功建立稳定高效的基因替换体系,为快速构建杜邦嗜热菌的遗传转化体系和研究该嗜热真菌的基因功能提供有效方法。     

嗜热菌——工业用酶的新来源

综述了嗜热菌和极端嗜热菌产生的热稳定性的淀粉酶、纤维素酶、环糊精酶、木聚糖酶、几丁质酶、葡萄糖异构酶、蛋白酶等的研究进展及其在食品、化工、环保等方面的应用前景。     

金属离子对嗜热菌BF80生长及苯酚降解的影响研究

探测了17种金属离子对嗜热菌BF80菌生长和降解苯酚的影响。结果表明：与对照相比, 0.01%的Cu2+、Zn2+、Co2+、Ba2+、Hg2+、Ni2+、Ag+ 和Al3+对嗜热菌BF80有强抑制作用; Cr2+对嗜热菌BF80的苯酚降解特性有强抑制作用, 而其生长量只受到一定的抑制作用; Sn2+、Fe2+、Fe3+和Pn2+ 对嗜热菌BF80的生长和苯酚降解有一定抑制作用, 该作用随金属粒子浓度的增加而增大; 低浓度Mn2+ 和Mo2+可以使其生长量增大且促进苯酚降解, 但超过0.1%的浓度则抑制其生长; Ca2+ 和Mg2+可以加速嗜热菌BF80的生长和降解苯酚的速率, 但对苯酚的最大降解率却几乎没有影响; Mo2+ 和Mn2+的复合作用使嗜热菌BF80的生长量更大, 但是苯酚降解率却比分别单独添加Mo2+ 和Mn2+时低。     

金属离子对嗜热菌BF80生长及苯酚降解的影响研究

探测了17种金属离子对嗜热菌BF80菌生长和降解苯酚的影响.结果表明:与对照相比,0.01%的Cu2 、Zn2 、CO2 、Ba2 、Hg2 、Ni2 、Al 0和Al3 对嗜热菌BF80有强抑制作用;Cr2 对嗜热菌BF80的苯酚降解特性有强抑制作用,而其生长量只受到一定的抑制作用;Sn2 、Fe2 、Fe3 和Pn2 对嗜热菌BF80的生长和苯酚降解有一定抑制作用,该作用随金属粒子浓度的增加而增大;低浓度Mn2 和Mo2 可以使其生长量增大且促进苯酚降解,但超过0.1%的浓度则抑制其生长;Ca2 和Mg2 可以加速嗜热菌BF80的生长和降解苯酚的速率,但对苯酚的最大降解率却几乎没有影响;Mo2 和Mn2 的复合作用使嗜热菌BF80的生长量更大,但是苯酚降解率却比分别单独添加Mo2 和Mn2 时低.     

Development of a rapid detection and enumeration method for thermophilic bacilli in milk powders

Thermophilic strains of Geobacillus, Anoxybacillus and Bacillus that are able to grow at 55 degrees C and above are recognized as commonly occurring contaminants during the production of milk powders. In particular, Anoxybacillus flavithermus strain C and Bacillus licheniformis strain F are often the most prevalent. We describe here the development of a TaqMan-based real-time-PCR assay using a small amplicon of the ribosomal 16S rRNA gene for the selective and quantitative detection of thermophilic bacilli in milk powders. We further present an effective, rapid and inexpensive method for the isolation of total bacterial DNA from milk powder for quantitative PCR analysis within 20 min. With this method, the detection of thermophilic bacilli in milk powder can be accomplished within 1 h. The detection limit for reconstituted and inoculated milk was 8 vegetative cfu ml(-1) and 64 spores ml(-1), respectively.     

Rapid differentiation and enumeration of the total, viable vegetative cell and spore content of thermophilic bacilli in milk powders with reference to Anoxybacillus flavithermus

AIMS: The development of a rapid method for the selective detection and enumeration of the total and viable vegetative cell and spore content of thermophilic bacilli in milk powder by PCR. METHODS AND RESULTS: Quantitative PCR and microscopy indicate the presence of up to 2.9 log units more cells in milk powder than accounted for by plate counting due to the majority of cells being killed during milk processing. Two approaches for viable and dead cell differentiation of thermophilic bacilli by quantitative PCR were evaluated, these being the nucleic binding dye ethidium monoazide (EMA) and DNase I digestion. The former agent exposed to a viable culture of Anoxybacillus flavithermus caused considerable cell inactivation. In contrast, DNase I treatment had no effect on cell viability and was utilized to develop DNA extraction methods for the differential enumeration of total, viable vegetative cells and spores in milk powder. Moreover, the methods were further applied and evaluated to 41 factory powder samples taken throughout eight process runs to assess changes in numbers of vegetative cells and spores with time. DNase I treatment reduced vegetative cell numbers enumerated with PCR by up to 2.6 log units. The quantification of spores in the factory milk powders investigated indicates on average the presence of 1.2 log units more spores than determined by plate counting. CONCLUSIONS: The method presented in this study provides the ability to selectively enumerate the total and viable cell and spore content of reconstituted milk. SIGNIFICANCE AND IMPACT OF THE STUDY: The current study provides a tool to monitor the extent of thermophilic contamination during milk powder manufacturing 60-90 min after sampling.     

Functional grouping of thermophilic Bacillus strains using amplification profiles of the 16S-23S internal spacer region

Molecular and biochemical assays were used to determine the identification of thermophilic bacilli isolated from New Zealand milk powder. One hundred and forty one isolates of thermophilic bacilli were classified into six species using biochemical profiles. Geobacillus stearothermophilus represented 56% of the isolates. All isolates were also analysed by randomly amplified polymorphic DNA (RAPD) analysis, with 45 types identified. Amplification of the 16S-23S rDNA internal spacer region produced two to eight amplification products per strain. The patterns from gel electrophoresis of the internal spacer region amplicons formed two major groupings suggesting the possibility of two distinct species. Partial sequences of 16S rDNA from representatives from each group were compared with sequences in GeneBank and were found to match the 16S rDNA sequences of B. flavothermus and G. thermoleovorans. Primers were designed for these species and used to screen an arbitrary selection of 59 of the dairy isolates. This enabled the identification of 28 isolates as B. flavothermus and 31 isolates as Geobacillus species and these appear to be the predominant isolates in the New Zealand milk powder samples examined. Comparison of the fragment pattern generated by amplification of the 16S-23S rDNA internal spacer region is a simple method to differentiate thermophilic Bacillus species associated with the dairy industry.     

Influence of cations on growth of thermophilic Geobacillus spp. and Anoxybacillus flavithermus in planktonic culture

Free ions of Na(+), K(+), Ca(2+), and Mg(2+) influenced the optical density of planktonic cultures of thermophilic bacilli. Anoxybacillus flavithermus E16 and Geobacillus sp. strain F75 (milk powder manufacturing plant isolates) and A. flavithermus DSM 2641 and G. thermoleovorans DSM 5366 were studied. Ca(2+) and Mg(2+) were associated with increases in optical density more so than Na(+) and K(+). Overall, it appeared that Ca(2+) and/or Mg(2+) was required for the production of protein in thermophilic bacilli, as shown by results obtained with A. flavithermus E16, which was selected for further study.     

Description and validation of a rapid (1 h) flow cytometry test for enumerating thermophilic bacteria in milk powders

AIMS: The aim of this study was to develop a rapid assay for enumerating thermophilic bacteria in milk powder. METHODS AND RESULTS: The BactiFlow flow cytometer was used to count bacteria based on esterase activity in viable bacterial cells. A protocol for total viable bacteria was modified by heat-treating the sample to selectively label thermophilic bacteria. Samples of milk powder dissolved in 0.1% peptone were treated with 0.8% ethylenediaminetetraacetic acid to reduce background interference because of denatured milk proteins. Either thermophilic bacteria were added to the dissolved milk powder or milk powder solutions were incubated at 55 degrees C for 2-3 h to enrich the natural thermophile population for testing. Results from the BactiFlow were compared with traditional plate count results. CONCLUSIONS: Thermophilic bacteria in milk powder can be enumerated within 1 h using the BactiFlow flow cytometer. SIGNIFICANCE AND IMPACT OF THE STUDY: Microbiological test results obtained within 1 h can potentially be used to monitor manufacturing processes, effectively trace problems and provide confidence in the manufacture of product.     

Factors influencing attachment of thermophilic bacilli to stainless steel

AIMS: This project aimed to investigate the mechanism of attachment of the vegetative cells and spores of thermophilic bacilli to stainless steel with a view to devising strategies to limit biofilm development and survival. METHODS AND RESULTS: Spores and vegetative cells of bacterial isolates were exposed to protein denaturing agents (sodium dodecyl sulphate (SDS) and trypsin) and polysaccharide removing agents (sodium metaperiodate, trichloroacetic acid (TCA) and lysozyme). Treatment with sodium metaperiodate, TCA and lysozyme increased the number of vegetative cells attaching in many of the strains studied, while SDS and trypsin decreased attachment. Spores attached to stainless steel in greater numbers than vegetative cells, and the various treatments had less effect on this attachment than for vegetative cells. Viability of the cells or spores was not an important factor in attachment, as cells and spores rendered non-viable also attached to stainless steel in similar numbers. Coating the stainless steel with skim milk proteins decreased the attachment of both vegetative cells and spores. There was no correlation between the degree of attachment and the amount of extracellular polysaccharide (EPS) produced by each strain, surface hydrophobicity or zeta potential of vegetative cells or spores, though spores were found to be more hydrophobic than vegetative cells. CONCLUSIONS: The results suggest that biofilm formation by these thermophilic bacilli is probably a multifactorial process, and that cell-surface proteins play a very important role in the initial process of attachment during the formation of biofilms by these bacteria. SIGNIFICANCE AND IMPACT OF THE STUDY: This information will provide direction for developing improved cleaning systems to control biofilms of thermophilic bacilli in dairy manufacturing plants.     

Structure and function of L-lactate dehydrogenases from thermophilic and mesophilic bacteria, XI. Engineering thermostability and activity of lactate dehydrogenases from bacilli

An extensive comparative structural analysis of lactate dehydrogenase (LDH) sequences from thermophilic, mesophilic and psychrophilic bacilli revealed characteristic primary structural differences. These specific amino-acid substitutions were found in the entire LDH molecule. However, in certain regions of the LDH an accumulation of these exchanges could be detected. These regions seem to be particularly important for the temperature adaptation of the enzyme. The influence of one of such regions at the N-terminus on stability and activity of LDHs was analysed by the construction of hybrid mutants between LDH sequences from thermophilic, mesophilic and psychrophilic bacilli and also by site-directed mutagenesis experiments at five different positions. The substitutions of Thr-29 or Ser-39 to Ala residues in the LDH from the mesophilic B. megaterium increased the thermostability of the enzyme drastically (15 degrees C). An increase of 20 degrees C could be observed when both amino-acid substitutions were introduced. These amino-acid substitutions resulted in an increase of Km for pyruvate and led to a three-fold reduction of the activity (kcat/Km) at 40 degrees C compared with the wild type enzyme. The influence of these amino-acid substitutions was also investigated in the LDHs from thermophilic and psychrophilic bacilli. The high heat resistance of the LDH from the thermophilic B. stearothermophilus was not altered by the Ala to Thr and Ser substitutions at positions 29 and 39, respectively. This indicates a cooperatively stabilized conformation of this LDH. However, in this mutant of the B. stearothermophilus LDH the activity (kcat/Km) was increased two-fold.     

Isolation and identification of obligate thermophilic sporeforming bacilli from ocean basin cores

Bartholomew, J. W. (University of Southern California, Los Angeles), and George Paik. Isolation and identification of obligate thermophilic sporeforming bacilli from ocean basin cores. J. Bacteriol. 92:635-638. 1966.-Obligate thermophilic sporeforming aerobic bacilli were isolated from 11 ocean basin cores taken from locations in a 150 mile long area off of the coast from Ensenada, Mexico, to Santa Catalina Island, and ranging as far out from shore as 160 miles. Isolated strains of bacilli were all identified as being identical, or closely related, to Bacillus stearothermophilus.     

临沧地区温泉中的嗜热性芽孢杆菌及其特征

本文报道临沧地区温泉中的嗜热性芽孢杆菌及其特征。从该地区温泉中分离出Bacillusstearothermophilus和Bacillus thermosubtilis sp.nov.两个种。这些菌株都具有在自养型培养基上生长的能力。从这些温泉中没有分离出Thermus。     

Cronobacter ('Enterobacter sakazakii'): current status and future prospects

The genus Cronobacter accommodates the 16 biogroups of the emerging opportunistic pathogen known formerly as Enterobacter sakazakii . Cronobacter spp. are occasional contaminants of milk powder and, consequently, powdered infant formula and represent a significant health risk to neonates. This review presents current knowledge of the food safety aspects of C ronobacter , particularly in infant formula milk powder. Sources of contamination, ecology, disease characteristics and risk management strategies are discussed. Future directions for research are indicated, with a particular focus on the management of this increasingly important bacterium in the production environment.