3D chromatin architecture and epigenetic regulation in cancer stem cells

Dedifferentiation of cell identity to a progenitor-like or stem cell-like state with increased cellular plasticity is frequently observed in cancer formation.During this process,a subpopulation of cells in tumours acquires a stem cell-like state partially resembling to naturally occurring pluripotent stem cells that are temporarily present during early embryogenesis.Such characteris-tics allow these cancer stem cells (CSCs) to give rise to the whole tumour with its entire cellular heterogeneity and thereby support metastases formation while being resistant to current cancer therapeutics.Cancer devel-opment and progression are demarcated by transcrip-tional dysregulation.In this article,we explore the epigenetic mechanisms shaping gene expression dur-ing tumorigenesis and cancer stem cell formation,with an emphasis on 3D chromatin architecture.Comparing the pluripotant stem cell state and epigenetic repro-gramming to dedifferentiation in cellular transformation provides intriguing insight to chromatin dynamics.We suggest that the 3D chromatin architecture could be used as a target for re-sensitizing cancer stem cells to therapeutics.     

Analyzing the action of evolutionarily conserved modules on HMW-GS 1Ax1 promoter activity

Key message

The specific and high-level expression of 1Ax1 is determined by different promoter regions. HMW-GS synthesis occurs in aleurone layer cells. Heterologous proteins can be stored in protein bodies.

Abstract

High-molecular-weight glutenin subunit (HMW-GS) is highly expressed in the endosperm of wheat and relative species, where their expression level and allelic variation affect the bread-making quality and nutrient quality of flour. However, the mechanism regulating HMW-GS expression remains elusive. In this study, we analyzed the distribution of cis-acting elements in the 2659-bp promoter region of the HMW-GS gene 1Ax1, which can be divided into five element-enriched regions. Fragments derived from progressive 5′ deletions were used to drive GUS gene expression in transgenic wheat, which was confirmed in aleurone layer cells, inner starchy endosperm cells, starchy endosperm transfer cells, and aleurone transfer cells by histochemical staining. The promoter region ranging from ??297 to ??1 was responsible for tissue-specific expression, while fragments from ??1724 to ??618 and from ??618 to ??297 were responsible for high-level expression. Under the control of the 1Ax1 promoter, heterologous protein could be stored in the form of protein bodies in inner starchy endosperm cells, even without a special location signal. Our findings not only deepen our understanding of glutenin expression regulation, trafficking, and accumulation but also provide a strategy for the utilization of wheat endosperm as a bioreactor for the production of nutrients and metabolic products.

     

烤烟根系分泌物中单糖的组分含量及其相关分析

以4个不同烤烟品种为研究材料,采用盆栽试验,运用高效毛细管区带电泳法测定各品种根际土、非根际土、根系及叶片中的单糖组分及含量,并分析其相关关系,探究根系分泌物中糖类的分泌特性。结果表明：在各样品中,共检出木糖、葡萄糖、半乳糖、核糖、阿拉伯糖和鼠李糖6种糖;不同品种根际土、非根际土、根系及叶片中检出的糖组分及含量均存在差异;同一品种中,叶片最高,根系次之,根际土和非根际土最低;相关性分析表明,木糖、阿拉伯糖、葡萄糖、鼠李糖和半乳糖总量在根际土、非根际土、叶片和根系间呈正相关关系,各单糖组分间均呈正相关关系,部分组分呈显著或极显著相关关系。研究表明,不同烤烟品种根系分泌这些单糖存在品种差异,且根系分泌单糖可能是一个沿浓度梯度的扩散过程。     

Review of ammonia-oxidizing bacteria and archaea in freshwater ponds

Aquaculture ponds are simple and unique ecosystems, which are affected intensively by human activities. In this mini-review, we focus our attention on the distribution and community diversity of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in pond water and sediments, as well as the possible ecological mechanisms involved. Moreover, we discuss the possibility of increasing the activity of ammonia-oxidizing organisms in order to improve the water quality in aquaculture ponds. Compared with eutrophic lakes, the significantly higher ammonia concentration in pond water does not lead to significantly higher AOB levels, and the abundance of AOA is too low to quantify accurately. Similar to eutrophic lakes, high abundances of AOA and AOB are present in the surface sediments at the same time, where the oxidation of ammonia is performed mainly by AOB. AOB and AOA exhibit significant seasonal variations in aquaculture ponds, which are affected by the temperature, pH, and dissolved oxygen. The dominant AOB species are Nitrosomonas and the Nitrosospira lineage in pond environments. Nitrososphaera or members of the Nitrososphaera-like cluster dominate the AOA species in surface sediments, whereas the Nitrosopumilus cluster dominates the deeper sediments. AOB and AOA can be enriched on artificial substrates suspended in the pond water, thereby potentially improving the water quality.

     

北方风沙区生态修复的科学原理、工程实践和恢复效果

北方风沙区位于欧亚草原的东部,是我国生态环境最为脆弱的地区之一,其在北方生态安全屏障和丝绸之路经济带建设中具有十分重要的战略地位。在国家一系列生态保育工程的支持下,该地区的生态环境得到明显改善。但是,由于受人类活动和全球气候变化的影响,该地区仍然面临着严峻的环境压力。在中国科学院科技服务网络计划(STS计划)等项目支持下,开展了北方风沙区土地沙化成因及退化土地空间分布研究,集成了北方风沙区重点脆弱区生态恢复的理论和技术体系,以内蒙古中部的阴山北麓地区、内蒙古浑善达克沙地和蒙辽交界的科尔沁沙地为重点研究区域,进行了高效人工草地建植、天然草地恢复和管理、沙化草地治理等相关工程技术的示范,开展生态恢复模式的效果跟踪监测和生态效益评估,确定生态恢复技术和模式的技术参数和指标,明确不同集成技术与模式在北方风沙区的适用区域和范围,为技术模式的推广应用提供科学依据。通过上述研究,可以为中央和地方政府制定生态系统管理和退化生态系统恢复政策、建立我国北方生态安全屏障提供决策依据,为生态修复产业提供技术指南,为相关研究提供全面系统的基础数据支撑。     

Greater soil microbial biomass loss at low frequency of N addition in an Inner Mongolia grassland

低频率的氮添加使内蒙古草原土壤微生物生物量碳出现更大幅度下降 土壤微生物生物量在生物地球化学循环过程中至关重要,是土壤碳固持的前体物质。人为氮输入深刻地改变了草地土壤微生物生物量。然而,传统氮沉降模拟实验仅通过低频率的氮添加进行,与持续高频率的自然氮沉降相比,对土壤微生物生物量的影响可能存在差异。不同频率的氮添加对土壤微生物生物量的影响尚缺乏可靠的数据支撑。本研究通过在不同的氮添加速率(0–50 g N m−2 yr−1)下,控制氮添加频率(每年2次和12次),研究了土壤微生物生物量碳对不同氮添加频率的响应。研究结果表明,在两种氮添加频率下,随着施氮水平的提高,土壤微生物生物量碳逐渐降低。然而,在低施氮频率下,土壤微生物生物量的下降幅度更大,这说明传统的氮添加实验可能高估了氮沉降对土壤微生物生物量的影响。在低施氮频率下,土壤酸化、无机氮积累、碳氮失衡、地下净初级生产力分配减少和真菌细菌比例降低等情况加剧,导致微生物生物量出现较大幅度下降。在未来研究中,为可靠预测氮沉降对草地生态系统土壤微生物功能和碳循环的影响,不仅要考虑氮添加的剂量,还需要考虑氮添加的频率。     

农杆菌介导的转化芦荟的研究

芦荟（Aloe）是美容和医疗保健工业的重要植物资源,然而基因工程途径改良芦荟鲜有报道。本实验研究了次氯酸钠、升汞不同浓度和时间对芦荟外植体的灭菌效果,比较了芦荟不同部位（叶片、叶鞘和茎段）的再生能力,利用GUS基因瞬间表达技术（X-Gluc染色）探讨了不同农杆菌对不同芦荟外植体的侵染效果,确定了G418筛选剂在芦荟转化后的最适筛选浓度,摸索了适宜于农杆菌—芦荟共培养用培养基组成和共培养条件,通过转化、筛选和移栽共获得了67棵抗性再生植株,进一步对抗性再生植株进行了PCR、Southern blotting和ELISA检测。结果表明,芦荟外植体灭菌方法为20.0%次氯酸钠溶液浸泡25min,效果优于利用0.1%升汞灭菌处理,茎部切段的再生能力高于叶片切段和叶鞘切段,适宜的共培养条件为芦荟外植体浸泡在含有农杆菌的液体共培养基中半小时后,在无菌滤纸上、24℃、10h光照共培养3天;EHA105农杆菌菌系对芦荟茎部细胞的侵染能力明显强于C58C1,EHA105侵染后GUS基因瞬时表达率达到了80.0%左右,而C58C1侵染后GUS基因瞬时表达率只有30.0%左右。G418用于筛选抗性再生芽和抗性植株的适宜浓度为10.0～25.0mg/L。PCR和Southern blotting检测证实外源基因已成功整合到芦荟基因组中,转化效率为0.9%,单拷贝整合占80.0%,2～3拷贝整合占20.0%,ELISA检测证明外源基因已在转基因芦荟中稳定表达。综上所述,初步建立了农杆菌介导转化芦荟的技术体系,为利用基因工程途径改良芦荟奠定了基础。