Introgression between invasive and native blue mussels (genus Mytilus) in the central California hybrid zone

The ecological and genetic factors determining the extent of introgression between species in secondary contact zones remain poorly understood. Here, we investigate the relative importance of isolating barriers and the demographic expansion of invasive Mytilus galloprovincialis on the magnitude and the direction of introgression with the native Mytilus trossulus in a hybrid zone in central California. We use double‐digest restriction‐site‐associated DNA sequencing (ddRADseq) to genotype 1337 randomly selected single nucleotide polymorphisms and accurately distinguish early and advanced generation hybrids for the first time in the central California Mytilus spp. hybrid zone. Weak levels of introgression were observed in both directions but were slightly more prevalent from the native M. trossulus into the invasive M. galloprovincialis. Few early and advanced backcrossed individuals were observed across the hybrid zone confirming the presence of strong barriers to interbreeding. Heterogeneous patterns of admixture across the zone of contact were consistent with the colonization history of M. galloprovincialis with more extensive introgression in northern localities furthest away from the putative site of introduction in southern California. These observations reinforce the importance of dynamic spatial and demographic expansions in determining patterns of introgression between close congeners, even in those with high dispersal potential and well‐developed reproductive barriers. Our results suggest that the threat posed by invasive M. galloprovincialis is more ecological than genetic as it has displaced, and continues to displace the native M. trossulus from much of central and southern California.     

The chimerical genome of Isla del Coco feral pigs (Costa Rica), an isolated population since 1793 but with remarkable levels of diversity

The history of domestic species and of their wild ancestors is not a simple one, and feral processes can clarify key aspects of this history, including the adaptive processes triggered by new environments. Here, we provide a comprehensive genomic study of Isla del Coco (Costa Rica) feral pigs, a unique population that was allegedly founded by two individuals and has remained isolated since 1793. Using SNP arrays and genome sequencing, we show that Cocos pigs are hybrids between Asian and European pigs, as are modern international pig breeds. This conclusively shows that, as early as the 18th century, British vessels were loading crossbred pigs in Great Britain and transporting them overseas. We find that the Y chromosome has Asian origin, which has not been reported in any international pig breed. Chinese haplotypes seem to have been transmitted independently between Cocos and other pig breeds, suggesting independent introgression events and a complex pattern of admixing. Although data are compatible with a founder population of N = 2, variability levels are as high in Cocos pigs as in international pig breeds (~1.9 SNPs/kb) and higher than in European wild boars or local breeds (~1.7 SNPs/kb). Nevertheless, we also report a 10‐Mb region with a marked decrease in variability across all samples that contains four genes (CPE, H3F3C, SC4MOL and KHL2) previously identified as highly differentiated between wild and domestic pigs. This work therefore illustrates how feral population genomic studies can help to resolve the history of domestic species and associated admixture events.     

青羊湖林场不同林分物种多样性与水源涵养能力的研究

通过群落调查和林下土壤及枯落物特性的分析,研究了青羊湖林场南酸枣（Choerospondias axillaris）林、未抚育马尾松（Pinus massoniana）林、抚育马尾松林、马尾松-南酸枣混交林4种林分的物种多样性及水源涵养能力。结果表明：（1）4种林分共有维管束植物135种,隶属58科97属,其中南酸枣林物种相对较丰富(88种),混交林次之(76种),抚育马尾松林较少(64种),未抚育马尾松林则相对最少(55种);（2）林分类型对物种多样性有重要影响,南酸枣林和混交林草本物种多样性较两种针叶林高,而灌木物种多样性则较低;（3）DCA排序结果显示,南酸枣林和混交林物种相似性程度较高,两种马尾松林与南酸枣林、混交林差异明显;（4）林分类型对水源涵养能力有重要影响,相比两种马尾松林,南酸枣林和混交林的林下枯落物蓄积量分别降低10.1%和15.2%,最大持水量降低34.1%和44.7%,而且0～10 cm土壤容重降低14.7%和7.4%,10～20 cm土壤容重降低14.1%和4.0%,20～30 cm土壤容重降低8.7%和4.9%,但总储水量增加15.8%和4.5%,即南酸枣林和混交林具有较高的水源涵养能力。研究认为,生态抚育增加了马尾松林的水源涵养能力。     

Evolution and Conservation of Central African Biodiversity: Priorities for Future Research and Education in the Congo Basin and Gulf of Guinea

The tropical forests of the Congo Basin and Gulf of Guinea harbor some of the greatest terrestrial and aquatic biological diversity in the world. However, our knowledge of the rich biological diversity of this region and the evolutionary processes that have shaped it remains limited, as is our understanding of the capacity for species to adapt or otherwise respond to current and projected environmental change. In this regard, research efforts are needed to increase current scientific knowledge of this region's biodiversity, identify the drivers of past diversification, evaluate the potential for species to adapt to environmental change and identify key populations for future conservation. Moreover, when evolutionary research is combined with ongoing environmental monitoring efforts, it can also provide an important set of tools for assessing and mitigating the impacts of development activities. Building on a set of recommendations developed at an international workshop held in Gabon in 2011, we highlight major areas for future evolutionary research that could be directly tied to conservation priorities for the region. These research priorities are centered around five disciplinary themes: (1) documenting and discovering biodiversity; (2) identifying drivers of evolutionary diversification; (3) monitoring environmental change; (4) understanding community and ecosystem level processes; (5) investigating the ecology and epidemiology of disease from an evolutionary perspective (evolutionary epidemiology). Furthermore, we also provide an overview of the needs and priorities for biodiversity education and training in Central Africa.     

Contribution of habitat type to residency and dispersal choices by overwintered and summer adult Colorado potato beetles

The walking and flight dispersal of marked overwintered and summer Colorado potato beetles (CPB), Leptinotarsa decemlineata (Say) (Coleoptera: Chrysomelidae), released in field box‐plots was monitored simultaneously in six habitats over a period of 4 days. The emigration out of plots by walking beetles was calculated from the catch in linear pitfall traps completely surrounding each box‐plot and emigration flight was estimated from the number of beetles missing from the plot or captured by the trap. Overwintered beetles dispersed sooner after release than summer beetles. Overall, the mean number of beetles retained by the habitat was significantly higher in the host habitat (potato) than in any non‐host habitat tested (soybean, pasture, bare ground, water, woodland). Unexpectedly, there was no or little difference in overall beetle retention between non‐host habitats except for higher retention in the water habitat. No difference in the ratio of flight over walking could be detected by the study between overwintered and summer CPB except in the water and woodland habitats. Twenty‐four hours after release, the highest ratios were obtained in the water and woodland habitats and the lowest in the bare‐ground habitat, but ratios were similar for all habitats, except water, after 96 h. As a population, under these experimental conditions, 96 h after release, it seems that CPB displayed a slight preference for flight over walking, with walking as a default mode. A fed and starved pre‐release treatment had no effect on dispersal rates or mode of dispersal. Essentially, our results showed that over a 96‐h period, northeastern North American CPB emigrated at similar rates from the various non‐host habitats encountered, except for water, using walking as much as flight. The host habitat retained CPB significantly longer than non‐host habitats but with a mode of dispersal ratio similar to that in non‐host habitats. The impact on dispersal of the various habitats encountered by CPB in the agro‐ecosystem was less important than expected suggesting that the interaction of environmental parameters is likely to have the most significant impact in determining dispersal rates and dispersal modes.     

Reduced genetic diversity in Bearded Vultures Gypaetus barbatus in Southern Africa

The Bearded Vulture Gypaetus barbatus occurs throughout its range in small and dwindling population fragments with limited genetic differentiation between populations, suggesting that the species might be managed as a single entity. The numbers of East and Southern African Bearded Vultures included in previous studies were small, so we determine the genetic variation within, evolutionary placement of and connectivity among sub‐Saharan African populations. Mitochondrial DNA fragment analyses detected little or no differentiation between populations in Ethiopia and Southern Africa, with reduced haplotype diversity in Southern Africa compared with populations in the Northern Hemisphere. The results inform conservation management of this species globally and locally, and offer guidelines for translocations should populations continue to decline.     

A phylogeographical perspective on the ex situ conservation of Aylacostoma (Thiaridae,Gastropoda) from the High Paraná River (Argentina–Paraguay)

Aylacostoma Spix, 1827, contains species that are the subject of focused conservation efforts under the auspices of the ‘Aylacostoma Project’, the only ex situ conservation programme for freshwater gastropods in South America. Two species from the High Paraná River (Argentina–Paraguay) are included in this programme (Aylacostoma chloroticum Hylton Scott, 1954 and Aylacostoma brunneum Vogler & Peso, 2014), as their habitats have disappeared as a consequence of the filling of the Yacyretá Reservoir in the 1990s. At present, A. chloroticum is restricted to only one known wild population in a small and fragile habitat, and wild populations of A. brunneum are presumed to have gone extinct. We used partial sequences of the cytochrome oxidase subunit I gene to provide the first phylogeographical perspective on these species from a limited dataset containing representatives of several wild populations that are successfully being bred in captivity. We found low genetic diversity and two haplotypes in A. chloroticum, and absence of variation with one haplotype in A. brunneum. The reservoir's entry zone was identified to be of great interest for conservation, and is where we suggest re‐introductions and translocations should be targeted, to preserve the future evolutionary potential of the extant diversity. © 2015 The Linnean Society of London     

稳定同位素分析在鸟类食性及营养级结构中的应用

稳定同位素分析(stable isotope analysis,SIA)自20世纪70年代末引入鸟类生态学领域以来,在研究鸟类食性和营养级结构方面展现了强大的发展潜力和广泛的应用前景。总结了该技术在鸟类食源组成和营养级结构方面研究的前期准备、实验流程、数据分析和研究进展等,重点阐述了其在鸟类保护与管理方面的应用。鉴于稳定同位素在生物体内存在分馏现象,从鸟类不同组织和部位对营养级富集因子、转化周期、同位素印记的差异,提出了完善该方法的建议和应用前景。     

Biomass harvest of invasive Typha promotes plant diversity in a Great Lakes coastal wetland

Ecological and financial constraints limit restoration efforts, preventing the achievement of desired ecological outcomes. Harvesting invasive plant biomass for bioenergy has the potential to reduce feedback mechanisms that sustain invasion, while alleviating financial limitations. Typha × glauca is a highly productive invasive wetland plant that reduces plant diversity, alters ecological functioning, its impacts increase with time, and is a suitable feedstock for bioenergy. We sought to determine ecological effects of Typha utilization for bioenergy in a Great Lakes coastal wetland by testing plant community responses to harvest‐restoration treatments in stands of 2 age classes and assessing community resilience through a seed bank study. Belowground harvesting increased light penetration, diversity, and richness and decreased Typha dominance and biomass in both years post‐treatment. Aboveground harvesting increased light and reduced Typha biomass in post‐year 1 and in post‐year 2, increased diversity and richness and decreased Typha dominance. Seed bank analysis revealed that young stands (<20 years) had greater diversity, richness, seedling density, and floristic quality than old stands (>30 years). In the field, stand‐age did not affect diversity or Typha dominance, but old stands had greater Typha biomass and slightly higher richness following harvest. Harvesting Typha achieved at least 2 desirable ecological outcomes: reducing Typha dominance and increasing native plant diversity. Younger stands had greater potential for native recovery, indicated by more diverse seed banks. In similar degraded wetlands, a single harvest of Typha biomass would likely result in significant biodiversity and habitat improvements, with the potential to double plant species richness.