Optimizing Radio Retention and Minimizing Radio Impacts in a Field Study of Upland Sandpipers

Abstract: Two challenges in wildlife telemetry are optimizing the duration of transmitter attachment and minimizing the impacts of radios on the behavior and demography of the study animal. We tested 4 methods of radio attachment for a breeding population of upland sandpipers (Bartramia longicauda) under natural conditions at a tallgrass prairie site in Kansas, USA. To estimate radio retention and weekly survival rates, we used the nest survival model of Program MARK. Radio retention was lowest at the start and the end of the breeding period. The expected duration of radio retention was 1.8 years for a leg-loop harness, 40 days for radios glued to clipped feathers, 26 days for radios glued directly to feathers, and 7 days for radios glued to bare skin. Few radiomarked birds died during our study, but 4 of 8 mortality events were discovered within one week of radiomarking. Both glue and harnesses increased predation risk immediately after radio attachment. The weekly probability of survival was high after a 1-week acclimation period, and the expected survival for a 10-week breeding period was similar in males and females. Attachment of radios with glue had no effect on annual return rates. However, attachment of radios with leg harnesses resulted in lower return rates among radiomarked birds than birds without radios. Radios attached with glue were shed in <1 year but radios attached with harnesses were retained for up to 1-2 years. Our results indicate a tradeoff between optimizing radio retention and minimizing impacts on demography. Glue techniques had retention rates that were suitable for only short-term studies, but attachment with glue had no long-term effect on annual return rates. Leg harnesses provided effective radio retention that had little effect on survival rates during the stationary breeding period, but resulted in lower annual return rates. Robust estimates of radio retention and survival will assist researchers in selecting attachment techniques that best meet the study goals of future telemetry projects.     

Cloning of habutobin cDNA and antithrombotic activity of recombinant protein

The habutobin cDNA was cloned from total RNA extracted from venom glands of Trimeresurus flavoviridis (the habu snake). The conceptual translation of 1539 bp of habutobin cDNA consists of 236 amino acids and its molecular weight is 25.7 kDa. Histidine (His)-tagged recombinant habutobin fusion protein, pET-r-habutobin and AcNPV-r-habutobin, was purified by bacterial system and baculoviral system, respectively. After refolding pET-r-habutobin, there were two protein bands at about 32 kDa and 65 kDa, indicating that habutobin might be produced as a monomer protein and processed to form two concatenated protein. Purified AcNPV-r-habutobin dose-dependently increased fibrin forming activity and inhibited collagen-induced aggregation of rabbit washed platelets. Thus, AcNPV-r-habutobin produced by baculoviral system is very useful for study on structure-function relationship, which is necessary for developing an antithrombotic drug from habutobin.     

A Comparison of the Mechanical and Structural Properties of Fibrin Fibers with Other Protein Fibers

In the past few years a great deal of progress has been made in studying the mechanical and structural properties of biological protein fibers. Here, we compare and review the stiffness (Young’s modulus, E) and breaking strain (also called rupture strain or extensibility, ε_max) of numerous biological protein fibers in light of the recently reported mechanical properties of fibrin fibers. Emphasis is also placed on the structural features and molecular mechanisms that endow biological protein fibers with their respective mechanical properties. Generally, stiff biological protein fibers have a Young’s modulus on the order of a few Gigapascal and are not very extensible (ε_max < 20%). They also display a very regular arrangement of their monomeric units. Soft biological protein fibers have a Young’s modulus on the order of a few Megapascal and are very extensible (ε_max > 100%). These soft, extensible fibers employ a variety of molecular mechanisms, such as extending amorphous regions or unfolding protein domains, to accommodate large strains. We conclude our review by proposing a novel model of how fibrin fibers might achieve their extremely large extensibility, despite the regular arrangement of the monomeric fibrin units within a fiber. We propose that fibrin fibers accommodate large strains by two major mechanisms: (1) an α-helix to β-strand conversion of the coiled coils; (2) a partial unfolding of the globular C-terminal domain of the γ-chain. The senior authors R. R. Hantgan and S. T. Lord have contributed equally to this article.     

人D-二聚体的制备及其冻干性质的分析

以人源纤维蛋白原为原材料制备D-二聚体,将其制成冻干品并分析其冻干性质。使用凝血酶、Factor XIIIa酶解纤维蛋白原,获得交联纤维蛋白。经纤溶酶降解交联纤维蛋白,生成纤维蛋白降解产物。超滤除去纤维蛋白降解产物中的小分子物质,可获得较高纯度的D-二聚体。通过筛选和优化冻干方案,将D-二聚体制备成冻干品。经检测可知,D-二聚体冻干品可在37℃稳定保存12 d;复溶后在25℃稳定保存8 d;复溶后在4℃稳定保存30 d;复溶时,常用复溶溶剂对其复溶后的活性检测无明显影响。     

应用噬菌体抗体库技术制备特异抗人纤维蛋白鼠单链抗体

应用Pharmacia公司的重组噬菌体抗体系统,从经过人交联纤维蛋白特异抗原D二聚体(DD)免疫过的鼠脾细胞mRNA中构建出组合单链抗体(ScFv)cDNA文库。文库cDNA克隆到噬菌粒载体pCANTAB5E,转化大肠杆菌TG1,得到2.5×10~5个氨苄抗性菌落。通过噬菌体表面呈现,用DD对表达的重组噬菌体单链抗体文库进行三轮亲和富集获得一株特异抗DD的噬菌体单链抗体(ScFvA11)。经Phage-ELISA鉴定,呈现在噬菌体表面的ScFvA11与DD结合的ELISA阳性滴度小于10~7tfu/ml,而与人纤维蛋白原结合的ELISA滴度大于10~(10)tfu/ml,两者相差1000倍以上。表明ScFvA11具有较好的DD结合特异性。经序列分析,ScFvA11cDNA全长729bp,其中Vh基因354bp,编码118个氨基酸;Vl基因327bp,编码108个氨基酸;Vh与Vl之间为(Gly_4Ser)_315个氨基酸连接肽。     

Comparative anatomy of slime glands in onychophora (velvet worms)

Onychophorans use a unique hunting and defense strategy, which involves the ejection of an adhesive slime secretion produced by a pair of specialized glands. So far, a comparative study on the anatomy of these glands has not been carried out among different species. In this article, we compare anatomical features of slime glands in representatives of two major onychophoran subgroups, the Peripatopsidae and the Peripatidae, from different parts of the world. Our data show that the musculature of the reservoir is conserved whereas the composition of the secretory duct displays taxon‐specific variation. Major differences concern the arrangement of glandular endpieces, which are distributed along the duct in Peripatopsidae but condensed in numerous repeated rosettes in Peripatidae. In addition, there are differences in the attachment pattern of slime glands to the inner surface of the body wall and to the outer surface of the gut between the two major onychophoran subgroups. A tube‐like structure with a putative valve‐like function is found at the transition of the secretory duct and the reservoir in the five Peripatopsidae species studied whereas it is absent in the two representatives of Peripatidae. Our findings suggest that the arrangement of musculature in the reservoir of the slime gland has remained unchanged since the divergence of Peripatidae and Peripatopsidae, while the composition of the secretory duct has been altered in one of these groups. However, the direction of evolutionary changes in duct composition cannot be determined unambiguously due to current uncertainty regarding the phylogenetic relationships of Onychophora. J. Morphol. 2012. © 2012 Wiley Periodicals, Inc.     

A family of cell-adhering peptides homologous to fibrinogen C-termini

A family of cell-adhesive peptides homologous to sequences on different chains of fibrinogen was investigated. These homologous peptides, termed Haptides, include the peptides Cβ, preCγ, and CαE, corresponding to sequences on the C-termini of fibrinogen chains β, γ, and αE, respectively. Haptides do not affect cell survival and rate of proliferation of the normal cell types tested. The use of new sensitive assays of cell adhesion clearly demonstrated the ability of Haptides, bound to inert matrices, to mediate attachment of different matrix-dependent cell types including normal fibroblasts, endothelial, and smooth muscle cells. Here we present new active Haptides bearing homologous sequences derived from the C-termini of other proteins, such as angiopoietin 1&2, tenascins C&X, and microfibril-associated glycoprotein-4. The cell adhesion properties of all the Haptides were found to be associated mainly with their 11 N-terminal residues. Mutated preCγ peptides revealed that positively charged residues account for their attachment effect. These results suggest a mechanism of direct electrostatic interaction of Haptides with the cell membrane. The extended Haptides family may be applied in modulating adhesion of cells to scaffolds for tissue regeneration and for enhancement of nanoparticulate transfection into cells.     

In vitro models of angiogenesis and vasculogenesis in fibrin gel

In vitro models of endothelial assembly into microvessels are useful for the study of angiogenesis and vasculogenesis. In addition, such models may be used to provide the microvasculature required to sustain engineered tissues. A large range of in vitro models of both angiogenesis and vasculogenesis have utilized fibrin gel as a scaffold. Although fibrin gel is conducive to endothelial assembly, its ultrastructure varies substantially based on the gel formulation and gelation conditions, making it challenging to compare between models. This work reviews existing models of endothelial assembly in fibrin gel and posits that differerences between models are partially caused by microstructural differences in fibrin gel.     

N-Acetylglucosaminylation of Serine-Aspartate Repeat Proteins Promotes Staphylococcus aureus Bloodstream Infection

Staphylococcus aureus secretes products that convert host fibrinogen to fibrin and promote its agglutination with fibrin fibrils, thereby shielding bacteria from immune defenses. The agglutination reaction involves ClfA (clumping factor A), a surface protein with serine-aspartate (SD) repeats that captures fibrin fibrils and fibrinogen. Pathogenic staphylococci express several different SD proteins that are modified by two glycosyltransferases, SdgA and SdgB. Here, we characterized three genes of S. aureus, aggA, aggB (sdgA), and aggC (sdgB), and show that aggA and aggC contribute to staphylococcal agglutination with fibrin fibrils in human plasma. We demonstrate that aggB (sdgA) and aggC (sdgB) are involved in GlcNAc modification of the ClfA SD repeats. However, only sdgB is essential for GlcNAc modification, and an sdgB mutant is defective in the pathogenesis of sepsis in mice. Thus, GlcNAc modification of proteins promotes S. aureus replication in the bloodstream of mammalian hosts.     

Thrombin-dependent Incorporation of von Willebrand Factor into a Fibrin Network

Attachment of platelets from the circulation onto a growing thrombus is a process involving multiple platelet receptors, endothelial matrix components, and coagulation factors. It has been indicated previously that during a transglutaminase reaction activated factor XIII (FXIIIa) covalently cross-links von Willebrand factor (VWF) to polymerizing fibrin. Bound VWF further recruits and activates platelets via interactions with the platelet receptor complex glycoprotein Ib (GPIb). In the present study we found proof for binding of VWF to a fibrin monomer layer during the process of fibrinogen-to-fibrin conversion in the presence of thrombin, arvin, or a snake venom from Crotalus atrox. Using a domain deletion mutant we demonstrated the involvement of the C domains of VWF in this binding. Substantial binding of VWF to fibrin monomers persisted in the presence of the FXIIIa inhibitor K9-DON, illustrating that cross-linking via factor XIII is not essential for this phenomenon and suggesting the identification of a second mechanism through which VWF multimers incorporate into a fibrin network. Under high shear conditions, platelets were shown to adhere to fibrin only if VWF had been incorporated. In conclusion, our experiments show that the C domains of VWF and the E domain of fibrin monomers are involved in the incorporation of VWF during the polymerization of fibrin and that this incorporation fosters binding and activation of platelets. Fibrin thus is not an inert end product but partakes in further thrombus growth. Our findings help to elucidate the mechanism of thrombus growth and platelet adhesion under conditions of arterial shear rate.