Genetic issues in aquatic species management: the shortnose sturgeon (Acipenser brevirostrum) in the southeastern United States

Anadromous species occupy multiple freshwater,estuarine, and marine habitats, which posesspecial challenges in wildlife management. Inparticular, the level of immigration betweendrainages can be a critical factor in thedefinition of management units and the designof population-specific stocking programs. Thesemi-anadromous shortnose sturgeon (Acipenser brevirostrum) is listed as anendangered species under the Endangered SpeciesAct in the United States. To assess populationstructure in this species as a guide toeffective management, tissue samples werecollected from adult specimens (N = 198) fromfive river systems in the southeastern U.S.,and augmented with a sample from New Brunswick,Canada (N = 13), the extreme northern end ofthe species' range. Comparisons of mtDNAcontrol region sequences reveal a shallow genegenealogy and modest, but significant,population structuring (_st = 4.3%or _st = 17.7% when Canadian samplesare included). Populations inhabiting riversystems in the southeastern U.S. are closelyrelated, a pattern consistent with more recentdivergences along evolutionary timeframes. Haplotype diversity is moderate to high in mostdrainages (h = 0.383–1.000), exceptfor the Savannah and Edisto rivers, indicatingthat historical levels of mtDNA diversity mightbe largely intact outside of these drainages. Low mtDNA diversity in the Savannah andneighboring Edisto drainages might stem from anexperimental stocking effort during 1984–1992 that depressed overall genetic diversityin the Savannah and established or augmentedthe Edisto River population with a relativelylimited number of matrilines.     

产小檗碱诱变菌株培养条件的优化

S-NU-3-2菌株是对源自药用植物黄檗的内生真菌S6进行诱变获得的小檗碱产量比出发菌株有明显提高的突变株,本研究对其培养条件进行了优化,以期进一步提高其产量,为开发利用真菌发酵生产植物活性成分的新途径奠定基础。以菌丝生长和小檗碱产量为指标,筛选出了适宜该菌株发酵的基本培养基、碳源、氮源、光照和培养温度,并经进一步的正交试验优化,得出该高产菌株的最佳培养条件为豆芽汁基本培养基含蔗糖3%,酵母膏0.2%,pH7.0,温度26℃,全光照培养。与初始培养条件相比,在优化后的条件下,该菌株的小檗碱得率提高了47.2%,菌体生物量提高了24%。     

Using Scent-Matching Dogs to Identify Individual Amur Tigers from Scats

Abstract: Scent-matching dogs have previously been used to identify caged individual Amur tigers (Panthera tigris altaica) by fecal material (scat), but this technique has not been tested in the wild. We tested the hypothesis that trained dogs can identify individual tigers by unique characteristics present in scat. To conduct this work, we used 5 dogs and 58 scats from 25 known individual tigers in independent trials. Dogs correctly selected matched test scats at an average rate of 87% (SE ± 1.4%, n = 521 trials). The average accuracy rates for 4 dogs increased to 98% (SE ± 1.6%, n = 86 sets of repeated-trials) using repeated-trial tests. Each of 5 dogs made correct choices better than expected by chance (dog 1 χ²₁ = 507.9, P ≤ 0.001; dog 2 χ²₁ = 882.1, P ≤ 0.001; dog 3 χ²₁ = 374.1, P ≤ 0.001; dog 4 χ²₁ = 379.2, P ≤ 0.001; and dog 5 χ²₁ = 103.9, P ≤ 0.001). Four dogs were able to match 11 scats deposited over a 4-year period from one tiger with an accuracy of 100% (n = 40 trails). This method may be a useful alternative to genetic analyses that are used in conjunction with scat-sampling schemes in studies for which DNA genotyping is impractical or ineffective. Used with mark—recapture surveys to estimate species abundance, scent-matching dogs have the potential of being important tools in the study of wild Amur tigers, as well as other wildlife species.     

Motility and fertility of cryopreserved semen in Persian sturgeon,Acipenser persicus,stored for 30–60 min after thawing

We investigated the effect of storage times of frozen–thawed Persian sturgeon (Acipenser persicus) semen on the duration of sperm motility, percentage of motile sperm, and fertilization and hatching rates of fresh sperm and sperm stored for 0, 30, and 60 min at 4 °C post-thawing. Frozen thawed semen analyzed immediately after thawing had similar quality characteristics as fresh semen. For cryopreserved semen stored for 30 min after thawing the characteristics did not differ to fresh semen and cryopreserved semen. For cryopreserved semen stored for 60 min a significant decline in the parameters was observed. Fertilization and hatching rates were not affected by storage times of maximally 30 min of storage.     

Karyotype of North American shortnose sturgeon Acipenser brevirostrum with the highest chromosome number in the Acipenseriformes

The shortnose sturgeon Acipenser brevirostrum was revealed to have a larger number of chromosomes than previously reported for other sturgeon species. Its chromosome number ranged from 362 to 372 (of ten specimens examined), showing intraindividual variation. The karyotype of metaphase with the highest chromosome number (372) consisted of 89 pairs of macrochromosomes and 97 pairs of microchromosomes (fundamental number; NF=550). Although the microchromosomes were relatively shorter than the macrochromosomes, most of them had discernible arms and centromeres. Silver-stained nucleolar organizer regions (Ag-NORs) were localized on the telomeric regions of 5 pairs of chromosomes (Ag-NORs=10): 4 were made up of small meta/submetacentrics and 1 of acrocentrics. Polyploidy of A. brevirostrum should be hexaploid based on the karyotype, numerous chromosomes, Ag-NORs, and previously reported large genome size (ca. 13pg DNA/cell).Supplementary material to this paper is available in electronic format at http://dx.doi.org/10.1007/s10228-004-0257-z     

史氏鲟两种促性腺激素β亚基cDNA克隆及序列进化分析

从史氏鲟(Acipenserschrenkii)脑垂体中提取总RNA,利用GeneRacerTM技术,分别克隆得到促性腺激素Ⅰ(GTHⅠ)和Ⅱ(GTHⅡ)的β亚基cDNA全长。史氏鲟GTHⅠ-β亚基cDNA全长为1088bp,开放阅读框为384bp,编码128个氨基酸(Genbank序列登录号为:AY575920);GTHⅡ-β亚基cDNA全长为616bp,开放阅读框为408bp,编码136个氨基酸(Genbank序列登录号为:AY575921)。与其他脊椎动物进行了两种基因的氨基酸序列同源性比较表明:史氏鲟GTHⅠ-β与西伯利亚鲟相似性最高,为99·1%;与硬骨鱼类中鲈形目相似性最低,为34·5%。GTHⅡ-β与西伯利亚鲟相似性为98·3%,与其他硬骨鱼类除鲈形目外都超过60%,与鸟类的相似性最低,为42·8%。两个基因成熟肽构建的MP树显示:GTHⅠ与FSH的β亚基和GTHⅡ与LH的β亚基构成两个明显的聚类。用Mega2软件计算了所比对物种间开放读码框的核苷酸遗传距离并构建了NJ树和MP树,两个基因β亚基的NJ系统树和MP系统树拓扑结构相似,鲟鱼与真骨鱼类分别聚类,共同形成硬骨鱼纲聚类,与传统分类学一致。成熟肽相似性、遗传距离和系统树分支长度显示GTHⅠ-β亚基在真骨鱼类进化速率显著快于其他脊椎动物,而LH-β亚基在羊膜动物中进化比其他脊椎动物快。暗示这两种糖蛋白基因的进化伴随物种进化而显示其功能[动物学报52(2):362-375,2006]。     

史氏鲟免疫球蛋白重链可变区序列及多样性

为了研究史氏鲟免疫球蛋白重链可变区基因的组织结构和多样性,采用RTPCR技术从史氏鲟(Acipenserschrenckii)脾脏总RNA中获得了免疫球蛋白重链可变区cDNA克隆,随机挑取31个阳性克隆进行测序。结果表明:所有序列相同率高于75%,前导肽相同率高于90%,应属于同1个VH家族。其变异主要存在于互补性决定区,特别是CDR3区。在D片段序列中发现大量保守的基因序列(motif)。并发现多个VH基因片段可以共用一个J片段的现象。在基因组DNA重排过程中,VH片段可以与任意的D和J片段结合。此外,史氏鲟免疫球蛋白重链可变区的VH,D和J片段的随机重排外,外切核酸酶作用,以及在重排位点大量N,P片段的插入现象,都大大增加了鲟鱼免疫球蛋白的多样性。     

Effects of brackish water on growth, feed conversion and energy absorption efficiency by juvenile euryhaline and freshwater stenohaline fishes

Among six species of juvenile fishes (<6 months old), stenohaline species (channel catfish Ictalurus punctatus and goldfish Carassius auratus ) had their highest specific growth rate ( G ) and most efficient food conversion ratio ( E _C) and energy absorption efficiency ( I _E) in fresh water. Three of the euryhaline species (rainbow trout Oncorhynchus mykiss , striped bass Morone saxatilis and Gulf sturgeon Acipenser oxyrinchus desotoi ) had higher G and had more efficient E _C and I _E in 3 and 9‰ salinities than in lower salinities (fresh water and 1‰). For brown trout Salmo trutta (age 3–4 months), 9‰ was above the optimum level for G and E C. However, I _E for brown trout was not significantly different at 3 and 9‰ salinities. Over the salinity range tested, channel catfish had the largest change in G , E _C and I _E, while changes for euryhaline species were relatively small. Although all species tested survived and grew in all treatments, salinities as low as 1‰ adversely affected the stenohaline species, and 9‰ adversely affected brown trout.     

Parasitic Attachments by Overwintering Silver Lampreys, Ichthyomyzon unicuspis, and Chestnut Lampreys, Ichthyomyzon castaneus

We present evidence that at least some parasitic-phase silver lampreys, Ichthyomyzon unicuspis, and chestnut lampreys, I. castaneus, remain attached to host fish during the winter. Lake sturgeon, Acipenser fulvescens, harvested through the ice by spearfishers in the Lake Winnebago system in Wisconsin may bear silver lampreys or fresh lamprey wounds, and sturgeon with lamprey marks were significantly larger than sturgeon without them. Silver lampreys collected on paddlefish, Polyodon spathula, in the Wisconsin River in March were not significantly longer than silver lampreys collected previously in late October, but they were significantly heavier, an indication that they were feeding to at least some extent during the intervening period. Other large fish species, including northern pike, Esox lucius, and flathead catfish, Pylodictus olivaris, have been collected or observed during the winter with silver or chestnut lampreys attached. Although energy and nutrient intake by parasitic lampreys may be reduced during the winter, lampreys attached to hosts may also benefit from the hosts' mobility and ability to avoid potentially harmful situations.