艾滋病病毒蛋白酶高效表达载体及体外活性检测系统的构建

艾滋病是本世纪80年代初发现的一种烈性传染病,5年病死率为100％,致病因子为人免疫缺陷病毒,该病毒的蛋白酶在病毒复制和成熟中具有决定性的意义。由于目前国内外尚未获得艾滋病病毒蛋白酶的高效表达的重组子及活性检测系统,限制了它的研究与应用。本文利用PCR技术修饰了艾滋病病毒蛋白酶的基因,使其具有便于克隆及表达用的限制酶切位点及转录终止码,井在其C末端设置了一个可用于检验该酶活性的特殊序列。DNA序列分析揭示上述突变策略成功,将修饰后的艾滋病病毒蛋白酶基因克隆入大肠杆菌表达系统,并获得高效表达(>30％),Western-Bolt鉴定结果表明所表达的蛋白为艾滋病病毒所特有,并具有较好的生物活性。     

Decomposing trends in bird populations: Climate,life histories and habitat affect different aspects of population change

Aim

Despite the complexity of population dynamics, most studies concerning current changes in bird populations reduce the trajectory of population change to a linear trend. This may hide more complex patterns reflecting responses of bird populations to changing anthropogenic pressures. Here, we address this complexity by means of multivariate analysis and attribute different components of bird population dynamics to different potential drivers.

Location

Czech Republic.

Methods

We used data on population trajectories (1982–2019) of 111 common breeding bird species, decomposed them into independent components by means of the principal component analysis (PCA), and related these components to multiple potential drivers comprising climate, land use change and species' life histories.

Results

The first two ordination axes explained substantial proportion of variability of population dynamics (42.0 and 12.5% of variation in PC1 and PC2 respectively). The first axis captured linear population trend. Species with increasing populations were characterized mostly by long lifespan and warmer climatic niches. The effect of habitat was less pronounced but still significant, with negative trends being typical for farmland birds, while positive trends characterized birds of deciduous forests. The second axis captured the contrast between hump-shaped and U-shaped population trajectories and was even more strongly associated with species traits. Species migrating longer distances and species with narrower temperature niches revealed hump-shaped population trends, so that their populations mostly increased before 2000 and then declined. These patterns are supported by the trends of total abundances of respective ecological groups.

Main Conclusion

Although habitat transformation apparently drives population trajectories in some species groups, climate change and associated species traits represent crucial drivers of complex population dynamics of central European birds. Decomposing population dynamics into separate components brings unique insights into non-trivial patterns of population change and their drivers, and may potentially indicate changes in the regime of anthropogenic effects on biodiversity.     

Annotated chromosome numbers of selected asiaticPotentilla species

Chromosome numbers are reported for 19 collections representing 16 AsiaticPotentilla taxa. The first chromosome records are reported forP. desertorum Bunge var.arnavatensis Wolf (2n=28),P. festiva Soják (2n=28),P. griffithii Hook f. subsp.beauvaisii (Cardot) Soják (2n=42),P. micropetala D. Don subsp.byssitecta (Soják) Měsí?ek etSoják (2n=14),P. mollissima Lehm. (2n=28),P. moorcroftii Wall. exLehm. (2n=42),P. multicaulis Bunge (2n=14),P. [x]omissa Soják (2n=35, 56, 70) andP. stanjukoviczii Ovcz. exKoczk. (2n=14). Counts differing from those previously recorded are given forP. algida Soják (2n=56) andP. flagellaris Willd. exSchlecht. (2n=42). Chromosome numbers of the following species were confirmed:P. [x]agrimonioides Bieb. (2n=42),P. chinensis Ser. in DC. (2n=14),P. fragarioides L. (2n=14),P. lineata Trev. (2n=14) andP. sericea L. (2n=28). Taxonomy is briefly discussed. A new combinationP. micropetala D. Don subsp.byssitecta (Soják) Měsí?ek etSoják stat. nov. is proposed.     

The complex genome and adaptive evolution of polyploid Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum)

Zanthoxylum armatum and Zanthoxylum bungeanum, known as ‘Chinese pepper’, are distinguished by their extraordinary complex genomes, phenotypic innovation of adaptive evolution and species-special metabolites. Here, we report reference-grade genomes of Z. armatum and Z. bungeanum. Using high coverage sequence data and comprehensive assembly strategies, we derived 66 pseudochromosomes comprising 33 homologous phased groups of two subgenomes, including autotetraploid Z. armatum. The genomic rearrangements and two whole-genome duplications created large (~4.5 Gb) complex genomes with a high ratio of repetitive sequences (>82%) and high chromosome number (2n = 4x = 132). Further analysis of the high-quality genomes shed lights on the genomic basis of involutional reproduction, allomones biosynthesis and adaptive evolution in Chinese pepper, revealing a high consistent relationship between genomic evolution, environmental factors and phenotypic innovation. Our study provides genomic resources and new insights for investigating diversification and phenotypic innovation in Chinese pepper, with broader implications for the protection of plants under severe environmental changes.     

黄河流域植被格局变化对水分利用效率的影响

黄河流域横跨3个气候带,是全球人类活动最为强烈的地区之一,特殊的地理位置和复杂的下垫面导致其碳-水循环过程较为复杂。研究黄河流域碳水循环不仅是区域水资源利用的基础,也是实现气候变化条件下双碳目标的关键。水分利用效率(WUE)作为表征碳水过程的重要指标,可用于反映生态系统碳水耦合规律及其相互作用关系。基于此,利用全球陆表特征参量数据(GLASS)的净初级生产力(NPP)和蒸散(ET)产品以及中国逐年土地利用与覆盖数据集(CLUD-A),分析了黄河流域植被格局变化背景下WUE在1990—2018年的时空变化特征及其驱动力。结果表明：(1)黄河流域全域WUE在29 a的均值处在0.18—1.53 g C/kg H₂O之间,存在明显的空间异质性,上游地区WUE明显高于中下游地区,分别在0.66—0.92 g C/kg H₂O和0.43—0.62 g C/kg H₂O之间波动,二者均存在波动上升态势。(2)黄河流域全域WUE在以2000年为中间点的10 a的增速达到近29 a的峰值,流域植被格局变化所带来的流域内NPP与ET变化速...     

基于地表水与地下水分割校正的漓江流域水供给服务时空格局研究

喀斯特区域水循环过程与其他地区存在显著区别,其水供给服务也具有独特的空间分布特征。然而,目前针对喀斯特地区产水量的时空变化研究较少考虑喀斯特生态系统的特殊性,导致产水量的空间模拟结果存在一定偏差。根据喀斯特地貌形态和地下水补径排泄特征提出了一种产水量分割方法,并基于水量平衡原理建立了地表水与地下水分割校正概念模型。选取喀斯特山区典型区域漓江流域为研究区,通过上述方法校正了InVEST模型产水量模拟结果,从栅格、地貌分区和子流域3个尺度分析了漓江流域2000—2020年产水量校正前与校正后时空分布格局。研究结果表明：(1)漓江流域2000—2020年InVEST模型产水量呈现先减后增再减的趋势,水供给服务空间分布格局为北高南低。产水深度在岩溶区和非岩溶区几乎没有差异,但在岩溶区内部差异明显：裸露型岩溶区产水深度高于覆盖型和埋藏型,峰林平原产水深度高于峰丛洼地。子流域分区平均产水深度排序为漓江上游区>漓江中游区>恭城河区>荔浦河区>漓江下游区。(2)利用地表与地下水分割校正后,水供给服务空间分布格局为四周高于中部,西北部高于东南部。非岩溶区产水深度明显高于岩溶区,埋...     

谷氨酸棒杆菌代谢工程高效生产L-缬氨酸北大核心CSCD

L-缬氨酸作为一种支链氨基酸,广泛应用于医药和饲料等领域。本研究借助多种代谢工程策略相结合的方法,构建了生产L-缬氨酸的微生物细胞工厂,实现了L-缬氨酸的高效生产。首先,通过增强糖酵解途径、减弱副产物代谢途径相结合的方式,强化了L-缬氨酸合成前体丙酮酸的供给;其次,针对L-缬氨酸合成路径关键酶—乙酰羟酸合酶进行定点突变,提高了菌株的抗反馈抑制能力,并利用启动子工程策略,优化了路径关键酶的基因表达水平;最后,利用辅因子工程策略,改变了乙酰羟酸还原异构酶和支链氨基酸转氨酶的辅因子偏好性,由偏好NADPH转变为偏好NADH,从而提高了L-缬氨酸的合成能力。在5L发酵罐中,最优谷氨酸棒杆菌工程菌株Corynebacterium glutamicum K020的L-缬氨酸产量、得率和生产强度分别达到了110g/L、0.51g/g和2.29 g/(L·h)。     

基于碳酸酐酶IX的肿瘤成像和治疗研究进展

碳酸酐酶IX (carbonic anhydrase IX, CAIX)是一种在乏氧肿瘤细胞表面特异性过表达的跨膜蛋白,具有调节肿瘤细胞内外酸碱度的功能,与肿瘤增殖、侵袭和转移息息相关。因此,CAIX是一个很有潜力的肿瘤成像和治疗靶点。本文详细阐述了基于CAIX的肿瘤成像、治疗和诊疗一体化的研究进展,并对CAIX作为抗肿瘤靶点的应用前景进行了展望。