宁夏河东沙区刺槐和丝绵木水分利用策略

刺槐和丝绵木混交林是宁夏河东沙区防护林建设的主要模式,了解刺槐和丝绵木的水分利用策略,能为区域植被恢复和防护林林分结构调整提供科学依据。以宁夏河东沙区刺槐(Robinia pseudoacacia)和丝绵木(Euonymus bungeanus)混交林为研究对象,通过监测微气象、树干液流和土壤质量含水量,结合大气降水、土壤水、植物木质部水同位素组成,采用Granier及其校正公式,运用贝叶斯混合模型(MixSIAR)和相似性比例指数(PS)研究2个树种的蒸腾耗水、水分来源和水分利用关系。结果表明：刺槐和丝绵木的蒸腾耗水量在生长季中期较高,前期和后期较小,刺槐的蒸腾耗水量是丝绵木的1.55倍;影响刺槐蒸腾耗水的主要环境因子为饱和水汽压差、太阳辐射、0—40 cm土壤质量含水量和40—120 cm土壤质量含水量;影响丝绵木蒸腾耗水的主要环境因子为饱和水汽压差、太阳辐射、平均气温、0—40 cm土壤质量含水量和40—120 cm土壤质量含水量;蒸腾耗水较高时,刺槐主要吸收利用中层土壤水,丝绵木主要吸收利用浅层土壤水,蒸腾耗水较低时,刺槐主要吸收利用浅层土壤水,丝绵木主要吸收利用中层土壤水;在...     

荒漠草原生态恢复与重建：人工植被推动下水分介导的系统响应、生态阈值与互馈作用

荒漠草原(生态区)横贯我国西北地区东部,生态地位十分重要。近二十年来,通过封育禁牧、退耕还林(草),植被覆盖显著改善,但是生态系统质量和稳定性依然不高。由于长期将荒漠草原单纯视作草原的一部分,对其生态系统过渡性、脆弱性和复杂性本质特征认识不足,造成了荒漠草原生态学研究与区域生态建设实践之间不同程度的脱节。在分析荒漠草原生态区未来在我国生态安全格局中突出的但是被一定程度上忽视的地位的基础上,进一步归纳了荒漠草原生态系统的一般特征,指出了生态恢复与重建研究中存在的主要问题。进而以人工植被引入荒漠草原生态工程为案例,分析了人工植被驱动荒漠草原生态恢复与重建的过程与机制,归纳了“植被-水文-土壤”互馈作用驱动生态系统层级响应模式,并展望了今后的发展趋势与研究方向。     

Elastic priors to dynamically borrow information from historical data in clinical trials

Use of historical data and real-world evidence holds great potential to improve the efficiency of clinical trials. One major challenge is to effectively borrow information from historical data while maintaining a reasonable type I error and minimal bias. We propose the elastic prior approach to address this challenge. Unlike existing approaches, this approach proactively controls the behavior of information borrowing and type I errors by incorporating a well-known concept of clinically significant difference through an elastic function, defined as a monotonic function of a congruence measure between historical data and trial data. The elastic function is constructed to satisfy a set of prespecified criteria such that the resulting prior will strongly borrow information when historical and trial data are congruent, but refrain from information borrowing when historical and trial data are incongruent. The elastic prior approach has a desirable property of being information borrowing consistent, that is, asymptotically controls type I error at the nominal value, no matter that historical data are congruent or not to the trial data. Our simulation study that evaluates the finite sample characteristic confirms that, compared to existing methods, the elastic prior has better type I error control and yields competitive or higher power. The proposed approach is applicable to binary, continuous, and survival endpoints.     

Do Geographically Isolated Grasslands Follow the Principle of Island Biogeography in a Landscape Scale? Taking Poyang Lake Grassland as an Example

As one of the basic theories of biodiversity conservation, island biogeography has been widely accepted in the past decades. Originally, island biogeography was put forward and applied in oceanic environments. But later on, it was found out that the application was not only limited to oceanic islands, but also in terrestrial environments with relatively isolated conditions. In terms of biodiversity level, island biogeography generally focuses on a small scale, such as species diversity and genetic diversity. The studies of biodiversity on a large-scale based on island biogeography, such as ecosystem and landscape scales, were seldomly conducted. Taking Poyang Lake, the largest fresh water lake in China as case study area, 30 grasslands were randomly selected to study whether island biogeography can be applied to grasslands at a landscape level from three island attributes (area, distance and shape), and the most important ecological variable (flooding) in Poyang Lake. The results showed that in general, grasslands have the property of an island, and follow the basic principle of island biogeography. We found the area and flooding duration were the two most important determinants of landscape diversity. There was a significant positive correlation between the grassland area and the landscape diversity, which could be well expressed by logarithmic function model (R² = 0.73). There was a negative correlation between flooding duration and landscape diversity, which could be described by an inverse model (R² = 0.206). The distance to mainland and the shape of grassland were correlated with landscape diversity, but the fitting result of the models was not as good as expected. The possible reason could be that Poyang Lake is a seasonal lake, the water level varies with hydrological conditions, so that the grasslands are not strongly isolated and their shape is not stable enough required by island biogeography. Furthermore, it indicates that besides area, distance and shape attributes, flooding strongly affects the biodiversity of grassland vegetation, and should not be ignored when applying island biogeography theory to Poyang Lake. This study is expected to be a supplement for island biogeography in terrestrial environments, and the results are expected to benefit for the biodiversity conservation in Poyang Lake.     

人工辅助投食对滇金丝猴肠道微生物群落的影响

【背景】肠道菌群与宿主的消化吸收、免疫抵抗和行为等息息相关,并受宿主的饮食、生活环境等因素影响。【目的】人工辅助投食能增加野生动物的营养摄入,但对其肠道菌群影响的研究较少。【方法】以云南白马雪山国家级自然保护区内的野生和人工辅助投食滇金丝猴群的新鲜粪便为材料,通过高通量测序探究人工辅助投食对猴群肠道菌群的影响。【结果】人工辅助投食的猴群肠道菌群丰富度、均匀度及谱系多样性更高,并且个体间群落组成差异更小。通过多级物种差异判别分析(linear discriminant analysis effect size, LEfSe)分析发现,人工辅助投食对20种不同分类水平的细菌相对丰度有影响,包括提升了厚壁菌门(Firmicutes)等8种类群的相对丰度,降低了变形菌门(Proteobacteria)、拟杆菌门(Bacteroidetes)等12种类群的相对丰度。通过构建微生物相关网络发现,野生猴群肠道菌群网络结构更加复杂,鲁棒性更高。京都基因与基因组百科全书(Kyoto encyclopedia of genes and genomes, KEGG)功能预测结果表明,人工辅助投食降低了猴群肠...     

林麝源蜡样芽孢杆菌SCBCM001株的分离鉴定及全基因组序列分析

【背景】细菌性疾病是林麝规模化养殖的重要制约因素,蜡样芽孢杆菌曾在林麝化脓灶中检出,但是目前对林麝源蜡样芽孢杆菌的研究报道很少。【目的】对分离自病死林麝肝脏中的一株疑似蜡样芽孢杆菌进行分离鉴定和全基因组序列分析,为林麝相关疾病的防治奠定基础。【方法】将病原菌纯化培养后,对病原菌进行生化试验、药敏试验和小鼠致病性试验;并通过第3代单分子测序技术进行全基因组测序,根据测序结果进一步评估物种间的亲缘关系,并进行基因功能注释和遗传进化分析。【结果】该病原菌经平均核苷酸相似度分类和系统发育树分析属于蜡样芽孢杆菌群,生化结果符合蜡样芽孢杆菌的一般特征,将分离菌株命名为SCBCM001。该菌株对小鼠的半数致死量为8.3×107 CFU,对大多数β-内酰胺类、四环素和磺胺异噁唑耐药,对氨基糖苷类、头孢氨苄、头孢哌酮和亚胺培南等药物敏感;全基因组测序结果表明该菌株的染色体大小为5292570bp,GC含量为35.37%,多位点序列分型显示该菌株属于ST427序列类型。在菌株SCBCM001基因组内发现hblA、hblC、hblD、nheA、nheB、clo和cytK等多种毒力因子,同时菌株携带对β-内酰...     

绒山羊源大肠杆菌噬菌体φPTK的分子生物学特性及对小鼠大肠杆菌感染的防治效果

【背景】抗生素耐药问题是影响人类及养殖业健康的重要因素,噬菌体能特异性裂解细菌,成为抗生素替代品研究热点,是解决抗生素耐药难题、促进养殖业健康发展的新途径。【目的】通过研究绒山羊源大肠杆菌烈性噬菌体φPTK (phage target of K1)的分子生物学特性,同时利用小鼠感染模型研究φPTK对小鼠大肠杆菌感染的防治效果,为绒山羊大肠杆菌病的防控提供新策略。【方法】用聚乙二醇-氯化钠(PEG 8000-NaCl)浓缩φPTK后,采用透射电子显微镜观察其超微形态结构;运用苯酚-氯仿法提取φPTK核酸后通过Illumina HiSeq高通量测序分析其全基因组结构,使用Mauve比较基因组学分析,通过MEGA绘制噬菌体进化树;通过构建小鼠感染模型分析φPTK对小鼠感染大肠杆菌的防治效果。【结果】透射电镜显示φPTK头部为正多面体形,直径90 nm,有长约112 nm、直径约18 nm的可收缩长尾;φPTK基因组全长169 688 bp,GC含量37.72%,有264个开放阅读框,含穿孔素-裂解酶(holin-lysin)裂解系统,有抗穿孔素蛋白和裂解抑制辅助蛋白,未发现抗生素耐药基因和毒力基因;比较基因组分析表明,φPTK为一株新的绒山羊源大肠杆菌烈性噬菌体;小鼠大肠杆菌感染前和感染后分别使用φPTK进行预防和治疗的试验表明,未使用φPTK的阳性对照组小鼠全部死亡,预防组和治疗组小鼠存活率分别为80%和60%。【结论】噬菌体φPTK是一株能够在小鼠大肠杆菌感染中具有较好预防效果的有尾噬菌体目(Caudovirales)肌尾噬菌体科(Myoviridae)绒山羊源大肠杆菌烈性噬菌体,本研究为绒山羊噬菌体生物制剂的创制奠定了基础。     

基因重组与外源铁离子对大肠杆菌合成血红素的影响

【背景】大肠杆菌通过C5途径合成卟啉及血红素,5-氨基乙酰丙酸(5-aminolevulinic acid,5-ALA)是C5途径中关键的前体物质,血红素由原卟啉IX (protoporphyrin IX, PPIX)螯合一个铁离子所形成,目前5-ALA与PPIX的外泌对卟啉的积累和血红素合成的影响尚不清楚。【目的】构建5-ALA外泌蛋白基因rhtA和卟啉外泌蛋白基因tolC双缺失的大肠杆菌以积累卟啉,同时外源添加铁离子,并过表达亚铁螯合酶基因hemH及参与铁摄取的基因efeB,促进卟啉向血红素的转化。【方法】通过Red同源重组敲除大肠杆菌BL21(DE3)的rhtA和tolC,并外源添加不同浓度的FeSO₄及Fe₂(SO₄)₃,同时构建重组质粒pEHE过表达hemH和efeB,检测卟啉和血红素含量,分析卟啉向血红素的转化。【结果】敲除rhtA和tolC对菌体生长无显著影响,与野生菌WT相比,敲除菌株WT-RT的卟啉含量增加,血红素合成略有提升。外源添加100μmol/L Fe²⁺     

淋病奈瑟菌肽基脯氨酰异构酶的原核表达及其作为候选疫苗的初步评价

【背景】淋病是我国主要的性传播疾病之一,感染淋病奈瑟菌可促进人类免疫缺陷病毒(human immunodeficiency virus, HIV)的传播和感染。目前我国淋病发病人数呈上升趋势,随着多重耐药菌株的出现,亟须研发保护性疫苗来防治淋病的传播和感染。【目的】分析淋病奈瑟菌(Neisseria gonorrhoeae, NG)肽基脯氨酰异构酶(peptidyl-prolyl isomerase, PPIase)蛋白的高级结构和表位,探讨其作为疫苗和分子诊断靶点的潜力。【方法】利用生物信息学软件分析PPIase蛋白的极性、亲水性、柔韧性、表面可及性、二级和三级结构,以及T、B细胞表位等;用pET32a(+)质粒构建PPIase蛋白的原核表达系统并纯化蛋白,用纯化的重组蛋白和超声波破碎的NG全菌抗原分别免疫BALB/c小鼠,收获免疫血清;制备NG全细胞抗原,分别以全细胞抗原酶联免疫吸附试验(enzyme linked immunosorbent assay, ELISA)和间接免疫荧光试验检测重组PPIase蛋白血清抗体与NG全细胞表面抗原的结合情况。【结果】生物信息学分析结果显示,...     

二苯醚类除草剂的微生物降解研究进展

二苯醚类除草剂是一类广谱、高效、高选择性的除草剂,广泛应用于大豆、花生等农田一年生和多年生阔叶杂草的防除。由于该类除草剂不易降解,多年连续使用会导致其在土壤环境中的大量积累。本文概述了二苯醚类除草剂的基本结构及其对生物的影响,总结了降解二苯醚类除草剂的微生物种类、降解途径和降解过程中关键酶及其基因,分析了影响微生物降解二苯醚类除草剂的因素,对二苯醚类除草剂微生物降解未来的研究方向进行了展望,为深入研究二苯醚类除草剂的生物降解提供参考。