Paleoceanographic evolution of North Pacific surface water off Japan during the past 150,000 years

Hydrographic variability in the Mixed Water Region of the Northwest Pacific Ocean at latitudes 35°–40°N, between the Kuroshio Extension and Oyashio Front, causes complex upwelling, leading to large primary productivity and thus great fishery resources. We reconstructed the periodicity of the variability in North Pacific Intermediate Water upwelling and surface ocean hydrography based on the high-resolution analysis of diatom assemblages in seven cores, representing the last 150,000 years. We derived annual sea surface temperatures (SSTs) through a diatom-based proxy (Td′). The Td′-derived annual SSTs (°C) are controlled by orbital forcing, and show a reversed saw-tooth in southern cores, in contrast to a normal saw-tooth pattern in the northern cores. Oceanic diatom abundances along the northern margin of the Mixed Water Region are twice times as high as beneath the axis of the Kuroshio Extension, and fluctuated in a revised saw-tooth pattern with higher overall abundances interglacials. After the last deglaciation, annual SSTs declined markedly during Heinrich and Bond events in the northern North Atlantic, when ice-rafted detritus transported by icebergs was abundant. Wavelet analyses of the record of oceanic diatom abundances show significant variability at 2.0-kyr, 2 to 5.6-kyr and 3.2 to 9.6-kyr periods. Wavelet analyses of the annual SST records show significant periodicity at 1.4 to 2.6-kyr, 3.3 to 4.0-kyr, 7.2 to 12.8-kyr cycles.     

Genetic characterization of mutants resistant to the antiauxin p-chlorophenoxyisobutyric acid reveals that AAR3, a gene encoding a DCN1-like protein, regulates responses to the synthetic auxin 2,4-dichlorophenoxyacetic acid in Arabidopsis roots

To isolate novel auxin-responsive mutants in Arabidopsis (Arabidopsis thaliana), we screened mutants for root growth resistance to a putative antiauxin, p-chlorophenoxyisobutyric acid (PCIB), which inhibits auxin action by interfering the upstream auxin-signaling events. Eleven PCIB-resistant mutants were obtained. Genetic mapping indicates that the mutations are located in at least five independent loci, including two known auxin-related loci, TRANSPORT INHIBITOR RESPONSE1 and Arabidopsis CULLIN1. antiauxin-resistant mutants (aars) aar3-1, aar4, and aar5 were also resistant to 2,4-dichlorophenoxyacetic acid as shown by a root growth assay. Positional cloning of aar3-1 revealed that the AAR3 gene encodes a protein with a domain of unknown function (DUF298), which has not previously been implicated in auxin signaling. The protein has a putative nuclear localization signal and shares homology with the DEFECTIVE IN CULLIN NEDDYLATION-1 protein through the DUF298 domain. The results also indicate that PCIB can facilitate the identification of factors involved in auxin or auxin-related signaling.     

Transformation by complementation of a uracil auxotroph of the hyper lignin-degrading basidiomycete Phanerochaete sordida YK-624

Phanerochaete sordida YK-624 is a hyper lignin-degrading basidiomycete possessing greater ligninolytic selectivity than either P. chrysosporium or Trametes versicolor. To construct a gene transformation system for P. sordida YK-624, uracil auxotrophic mutants were generated using a combination of ultraviolet (UV) radiation and 5-fluoroorotate resistance as a selection scheme. An uracil auxotrophic strain (UV-64) was transformed into a uracil prototroph using the marker plasmid pPsURA5 containing the orotate phosphoribosyltransferase gene from P. sordida YK-624. This system generated approximately 50 stable transformants using 2 × 10⁷ protoplasts. Southern blot analysis demonstrated that the transformed pPsURA5 was ectopically integrated into the chromosomal DNA of all transformants. The enhanced green fluorescent protein (EGFP) gene was also introduced into UV-64. The transformed EGFP was expressed in the co-transformants driven by P. sordida glyceraldehyde-3-phosphate dehydrogenase gene promoter and terminator regions.     

Exogenous expression of claudin-5 induces barrier properties in cultured rat brain capillary endothelial cells

Claudins are thought to be major components of tight junctions (TJs), and claudin-5 and -12 are localized at TJs of the blood-brain barrier (BBB). Claudin-5-deficient mice exhibit size-selective (<800 Da) opening of the BBB. The purpose of this study was to clarify the expression levels of claudin-5 and -12 in rat brain capillary endothelial cells, and to examine the ability of claudin-5 to form TJs in cultured rat brain capillary endothelial cells (TR-BBB). Expression of claudin-5 mRNA in rat brain capillary fraction was 751-fold greater than that of claudin-12. The level of claudin-5 mRNA in the rat brain capillary fraction (per total mRNA) was 35.6-fold greater than that in whole brain, while the level of claudin-12 mRNA was only 13.9% of that in whole brain, suggesting that expression of claudin-12 mRNA is not restricted to brain capillaries. Transfection of TR-BBB cells with the claudin-5 gene afforded TR-BBB/CLD5 cells, which showed no change in expression of claudin-12 or ZO-1, while the expressed claudin-5 was detected at the cell-cell boundaries. The permeability surface product of [(14)C]inulin at a TR-BBB/CLD5 cell monolayer was significantly smaller (P < 0.01) than that for the parental TR-BBB cells, and the values of the permeability coefficient (Pe) were 1.14 x 10(-3) and 11.6 x 10(-3) cm/min, respectively. These results indicate that claudin-5, but not claudin-12, is predominantly expressed in brain capillaries, and plays a key role in the appearance of barrier properties of brain capillary endothelial cells.     

中国秋海棠属植物的传统利用

秋海棠属植物除了具有较高的观赏价值外,在中国还作为药用、食用、饮料和饲料等被利用。本文应用民族植物学研究方法,通过野外调查、文献和标本收集整理和研究,共记载了中国产26种秋海棠属植物被作为药用、食用、饮料和饲料加以利用。在所记载的26种国产秋海棠属植物中,有24种作药用,8种作食用(蔬菜)或饮料,5种作饲料。3种作饮料的种类在其自然分布地被广泛利用。9种秋海棠作为多种用途加以利用,其中8种既被作为药用、食用和饮料,也被作为饲料加以利用。本研究还表明,国产秋海棠属植物中,有些种类由于过度采集利用或其它因素已变得稀有或濒危。由此提出,合理开发利用和有效保护应成为今后中国秋海棠属植物研究的重要内容。     

Visualization analysis of inter-fragment interaction energies of CRP-cAMP-DNA complex based on the fragment molecular orbital method

A visualization method for inter-fragment interaction energies (IFIEs) of biopolymers is presented on the basis of the fragment molecular orbital (FMO) method. The IFIEs appropriately illustrate the information about the interaction energies between the fragments consisting of amino acids, nucleotides and other molecules. The IFIEs are usually analyzed in a matrix form called an IFIE matrix. Analyzing the IFIE matrix, we detect important fragments for the function of biomolecular systems and quantify the strength of interaction energies based on quantum chemistry, including the effects of charge transfer, electronic polarization and dispersion force. In this study, by analyzing a protein-DNA complex, we report a visual representation of the IFIE matrix, a so-called IFIE map. We comprehensively examine what information the IFIE map contains concerning structures and stabilities of the protein-DNA complex.