大别山野生油茶中茶氨酸检测与茶氨酸合成酶基因克隆

茶氨酸是茶树叶片中最丰富的游离氨基酸,具有重要的生理药理功能,但迄今仅在蘑菇、蕈和一些山茶科(属)植物中检测到茶氨酸。茶氨酸因有一种独特的风味特色"umami鲜爽味"而被人类营养学广泛研究,并发现合成茶氨酸的植物不仅在植物分类上具有积极意义,而且对于植物资源的有效发掘有巨大经济价值;同时还可以间接去研究茶树中茶氨酸的代谢机理以及茶氨酸合成酶的分离纯化和TS基因的克隆表达。该文运用HPLC、LC-TOF/MS对大别山地区野生幼年与成年油茶根、叶中茶氨酸进行检测,并结合分子生物学手段对油茶中茶氨酸合成酶(theanine synthetase,TS)基因进行克隆与生物信息学分析。结果表明:在幼年的油茶根中检测到茶氨酸,含量为0.08mg·g-1(鲜重),而在幼年的油茶叶片和成年油茶根、叶中均未检测到茶氨酸;在幼年油茶根中克隆出一条长为1 071bp油茶TS基因开放阅读框,其基因序列与茶树谷氨酰胺合成酶(glutamine synthetase,GS,AB117934)基因和TS(DD410896)序列的同源性达到98%,氨基酸序列与茶树中GS(AB117934)和TS(DD410896)的相似性高达99%。经生物信息学分析,该序列编码的TS蛋白具有20个磷酸化位点,不存在信号肽序列与跨膜结构,含有卷曲螺旋结构的亲水性细胞质蛋白。该研究将为油茶新经济价值的发掘,为茶氨酸在油茶中合成代谢途径的研究提供一定的理论基础,同时也为进一步研究茶氨酸在茶树中代谢机理提供了新的研究思路。     

茶树谷氨酰胺合成酶同源基因的克隆及表达分析

在实验室前期构建cDNA幼根文库获得谷氨酰胺合成酶(glutamine synthetase,GS,EC 6.3.1.2)同源序列(contig48)的基础上设计引物,通过SMART RACE技术克隆了该基因cDNA全长序列(命名为GS1-2,GenBank登录号:JQ925873.1)。结果显示:(1)GS1-2基因全长为1 710bp,开放阅读框长1 071bp,编码356个氨基酸,预测蛋白分子质量为39.3kD,理论等电点为5.65;核酸序列分析表明,GS1-2基因与从安吉白茶中克隆的茶氨酸合成酶基因相似性为99%。(2)将GS1-2基因克隆至原核表达载体pET-32a和pMAL-c5x,转化至大肠杆菌,IPTG诱导表达融合蛋白,SDS-PAGE检测结果表明,pET-32a-CsGS1-2转至Rosetta中诱导表达的蛋白与预测蛋白大小一致,主要以包涵体形式存在;而pMAL-c5x-CsGS1-2转化大肠杆菌BL21(DE3)诱导表达可产生可溶性蛋白。(3)进一步构建茶树GS1-2酵母表达载体pYES-DEST52-CsGS1-2并转化至酿酒酵母(WAT11)菌液中,添加底物(谷氨酸钠100μmol/L和盐酸乙胺500μmol/L)震荡培养并离心,UPLC-MS测定酶反应产物结果初步表明,目的蛋白不能催化盐酸乙胺和谷氨酸钠合成茶氨酸,但可以合成谷氨酰胺。     

夏季遮阴对茶树茶氨酸合成及其代谢相关基因表达的影响（英文）

为了研究夏季遮阴对茶树茶氨酸代谢途径的影响及对茶树内含物品质的改良作用,本研究以多年实生茶树为研究对象,利用Western blotting检测了夏季遮阴对茶树不同部位中茶氨酸合成酶(TS)、谷氨酰胺合成酶(GS)蛋白表达的影响,确定遮阴有利于嫩叶中TS的表达;随后利用实时荧光定量PCR检测方法探索了茶氨酸代谢途径中相关基因:TS、GS、谷氨酰胺α-酮戊二酸氨基转移酶(GOGAT)、谷氨酸脱氢酶(GDH)以及与氮素吸收和转化密切相关的亚硝酸还原酶(NiR)、精氨酸脱羧酶(ADC),在老、嫩叶中及不同遮阴时期的表达情况。结果表明遮阴有利于嫩叶中TS基因的表达,与叶部氨的再同化作用密切相关的GS、GOGAT和GDH基因均在老叶中有明显增加,而与硝基氮代谢相关的NiR、ADC基因表达在老叶与嫩叶中均明显下降。利用HPLC对遮阴后嫩叶中游离氨基酸含量的检测结果表明,遮阴明显促进茶叶部游离氨基酸总量的提高,其中贡献率最大是茶氨酸。本研究从分子水平上解析了遮阴促进茶叶部茶氨酸积累的调控机制,为今后夏秋茶栽培措施改良和品质改善提供理论基础。     

小麦谷氨酰胺合成酶的原核表达特点

谷氨酰胺合成酶(GS)是植物氮同化的关键酶,为了研究小麦GS同工酶的结构及其表达特点,我们构建了小麦GS1、GSr、GSe、GS2和GS2前体GS2p的原核表达载体,并对表达条件进行了优化。结果表明,尽管小麦GS同工酶氨基酸序列同源性达70%–80%,蛋白质表达却各具特点。30℃诱导3 h后,GSr、GSe及GS2表达量达最大,诱导7 h后GS1表达量达最大,GS2p不表达,表达量依次为GS1(22%)GSr(15%)GS2(12%)GSe(5%);且GSe可溶性表达,GS1主要为可溶性表达,而GSr和GS2为包涵体。30℃诱导3 h,GS同工酶相对转录量为GSr(7.59)GS2(1.84)GS2p(1.66)GSe(1.46)GS1(1.00),酶蛋白质翻译水平与转录水平不一致。mRNA结构分析显示,GS同工酶翻译起始区稳定二级结构的自由能不同:GS1(14.4)GSr(17.2)GS2(22.6)GSe(25.4)GS2p(31.6),自由能越小,翻译起始区结构越不稳定,蛋白表达水平越高。GS1、GSr、GSe和GS2可溶性表达的最佳诱导条件不同,分别是30℃诱导5 h、16℃诱导15 h、37℃诱导5 h及25℃诱导7 h;可溶性表达量为GS1(20%)GSr(13%)GS2(10%)GSe(7%),酶活性为GS1GSeGS2,GSr无活性。可见,GS同工酶的基因序列决定了蛋白质在原核细胞中的表达量、状态及其活性。     

谷氨酰胺合成酶与Wnt信号转导通路

GS（glutamine synthetase）或GLuL（glutamate-ammonia ligase）,即谷氨酰胺合成酶,为人体内重要的功能酶,催化谷氨酸与氨生成谷氨酰胺。在体内氮的代谢中,尤其在维持氨离子和谷氨酰胺的稳定中发挥着重要的作用。GS表达和活性的异常常会导致人体很多疾病的发生。近年来研究发现GS表达和活性的异常与Wnt信号通路的异常密切相关。     

小菜蛾中肠氨肽酶基因PxAPN5的克隆、原核表达及蛋白质同源建模分析

【目的】克隆和表达小菜蛾Plutella xylostella氨肽酶基因,并进行基因序列分析和同源建模分析。【方法】以小菜蛾中肠cDNA为模板克隆分析氨肽酶基因序列, 原核表达氨肽酶蛋白并进行酶活性测定, 应用配体印迹分析氨肽酶与Cry2Ab蛋白的结合, 通过蛋白质建模对突变位点进行分析。【结果】从小菜蛾中肠cDNA 扩增出氨肽酶基因, 该基因全长2 853 bp, 编码950个氨基酸, 预测蛋白分子量为107.3871 kDa, 等电点为5.24; 进化树分析显示, 克隆得到的氨肽酶基因属于APN家族5, 将其命名为PxAPN5（GenBank登录号: KM034756）。PxAPN5蛋白具有鳞翅目昆虫氨肽酶蛋白的保守性特征, 即含有N-糖基化位点、O-糖基化位点和GPI锚定位点, 具有“HEXXH”锌蛋白酶结构域和C端跨膜区域。在大肠杆菌Escherichia coli中原核表达PxAPN5, 表达产物经SDS-PAGE电泳, 在110 kDa附近出现特异性条带; 酶活性测试显示菌体破碎上清液具有氨肽酶活性, 比活力为1 047.2 U/g。配体印迹结果显示表达的PxAPN5能与Cry2Ab蛋白特异性结合。多序列比对结果表明, 与其他已报道的小菜蛾氨肽酶相比, PxAPN5氨基酸序列有3个保守性位点发生了突变,并通过蛋白质建模的方式表征突变位点。【结论】本研究成功克隆和表达了具有氨肽酶活性的小菜蛾氨肽酶, 并发现其能与Cry2Ab蛋白特异性结合; 通过蛋白质建模对氨肽酶突变位点的特征及功能进行了预测。 这些结果对小菜蛾氨肽酶的功能性研究提供了理论基础。     

西伯利亚蓼谷氨酰胺合成酶基因的克隆及碱性盐胁迫下的表达

根据西伯利亚蓼(Polygonum sibiricum Laxm.)地下茎抑制消减文库(SSH)中获得的谷氨酰胺合成酶基因(Glutamin synthetase,GS)EST序列,应用RACE技术克隆了具有Poly A的全长cDNA序列,以下简称为PsGS基因。该序列全长1 273 bp,其5'非翻译区178 bp,3'非翻译区24 bp,开放阅读框编码356个氨基酸残基;根据与其他植物谷氨酰胺合成酶的氨基酸序列的比对以及系统进化分析的结果,确定此基因为谷氨酰胺合成酶基因家族成员;经过SignalP3.0预测该蛋白没有信号肽,无切割位点,为非分泌蛋白。经过ProtParam计算该蛋白的理论等电点为5.55,分子量为39.2 kD,不稳定系数为43.82%,为非稳定蛋白。实时定量PCR分析表明,PsGS在西伯利亚蓼叶、茎、地下茎中均有表达。在3%NaHCO3诱导下,该基因在叶和茎中表达升高,在地下茎中表达受到抑制,推测该基因在抵御碱性盐迫时具有重要作用。     

罗汉果查尔酮合成酶基因的生物信息学分析

查尔酮合成酶(chalcone synthase,CHS)是类黄酮生物合成的关键酶,在植物发育、防止UV损伤、抗病和逆境反应中起着重要作用。本研究通过EST测序,获得了罗汉果查尔酮合成酶基因序列(登录号:GU980155)。为了进一步了解罗汉果查尔酮合成酶基因的特征,我们将其与46种植物的查尔酮合成酶基因的核酸序列和氨基酸序列进行比对和进化分析。结果表明,罗汉果查尔酮合成酶基因的核酸序列和氨基酸序列与其它物种的查尔酮合成酶基因均具较高同源性,编码区相似性约为94%。使用PHYLIP和MEGA4分别构建了邻接树、最大似然树和最大简约树,但经bootstrap检验,最优树未能明确罗汉果查尔酮合成酶基因的系统发育地位。以紫花苜蓿查尔酮合成酶的三维结构为参考,利用同源建模的方法预测了罗汉果查尔酮合成酶的三维结构,发现罗汉果查尔酮合成酶具有保守的活性位点和空间结构。     

PPK和GMAS共表达重组菌株的构建及其在L-茶氨酸合成中的应用

构建了共表达ATP再生和L-茶氨酸合成酶的重组大肠杆菌菌株,并将其应用于L-茶氨酸的合成中。合成多聚磷酸盐激酶(PPK)和γ-谷氨酰甲胺合成酶(GMAS)基因序列,分别利用p ETDuet-1和p ET-21a(+)载体,构建共表达重组质粒p ETDuet-ppk+gmas和p ET21a-ppk+gmas。将上述两种重组质粒转入大肠杆菌BL21(DE3)中,获得重组菌株TPG和APG。IPTG诱导表达后,SDS-PAGE结果表明,PPK和GMAS在两种重组菌中均可溶性表达。当用于催化L-茶氨酸合成时,来自APG的GMAS-PPK要优于TPG。利用APG所产的酶进行L-茶氨酸合成,在37℃、p H 7.0条件下,使用催化量ATP可实现L-茶氨酸的摩尔产率为86.0%。该结果一方面扩展了酶法ATP再生系统的应用,另一方面为生物催化合成L-茶氨酸提供了一种有效方法。     

白念珠菌几丁质合成酶三维结构的同源建模及其与FR-900403的分子对接研究CSCD

目的探究白念珠菌几丁质合成酶活性位点的结构特征。方法通过采用同源建模的方法首次构建白念珠菌几丁质合成酶的三维结构模型,模型的可靠性经Ramachandran和Profile-3D图进行验证。采用InsightⅡ-Binding site方法准确定位几丁质合成酶的活性位点,并研究了几丁质合成酶的重要功能残基在活性位点的立体分布。结果通过柔性分子对接方法首次阐明几丁质合成酶抑制剂FR-900403与靶酶活性位点的相互作用模式,明确几丁质合成酶与该类抑制剂结合时起重要作用的氨基酸残基。结论本研究为基于几丁质合成酶三维结构的药物靶点设计提供重要的参考信息,同时也为抗真菌药的发展奠定坚实的理论基础。     

Cloning and characterization of theNeisseria gonorrhoeae MS11folC gene

The gene coding for folylpoly-()-glutamate synthetase (FPGS)-dihydrofolate synthetase (DHFS) ofNeisseria gonorrhoeae (Ngo) has been cloned by functional complementation of anEscherichia coli folC mutant (SF4). The sequence encodes a 224-residue protein of 46.4 kDa. It shows 46% identity to theE. coli FPGS-DHFS and 29% identity to the PFGS ofLactobacillus casei. Sequence comparisons between the three genes reveal regions of high homology, including ATP binding sites required for bifunctionality, all of which may be important for FPGS activity. In contrast toL. casei FPGS, theE. coli andNgo enzymes share some additional regions which may be essential for DHFS activity. The products ofNgo folC and flanking genes were monitored by T7 promoter expression. Interestingly, deletion of the upstreamfolI gene, which encodes a 16.5 kDa protein, abolishes the capacity offolC to complementE. coli SF4 to the wild-type phenotype. The ability to complement can be restored byfolI providedin trans. UnlikefolC mutants, gonococcalfolI mutants are viable and display no apparent phenotype. Thus, in contrast toE. coli, Ngo folC is expressed at a sufficiently high level from its own promoter, in the absence of FolI. This study provides the first insights into the genetic complexity of one-carbon metabolism inNgo.     

Glutamine synthetase II inRhizobium: Reexamination of the proposed horizontal transfer of DNA from eukaryotes to prokaryotes

Summary We have determined the DNA sequence of aRhizobium meliloti gene that encodes glutamine synthetase II (GSII). The deduced amino acid sequence was compared to that ofBradyrhizobium japonicum GSII and those of various plant and mammalian glutamine synthetases (GS) in order to evaluate a proposal that the gene for this enzyme was recently transferred from plants to their symbiotic bacteria. There is 83.6% identity between theR. meliloti andB. japonicum proteins. The bacterial GSII proteins average 42.5% identity with the plant GS proteins and 41.8% identity with their mammalian counterparts. The plant proteins average 53.7% identity with the mammalian proteins. Thus, the GS proteins are highly conserved and the divergence of these proteins is proportional to the phylogenetic divergence of the organisms from which the sequences were determined. No transfer of genes across large taxonomic gaps is needed to explain the presence of GSII in these bacteria.     

Purification of the fengycin synthetase multienzyme system from Bacillus subtilis b213

The purification of the multienzyme system producing the lipodecapeptide fengycin in Bacillus subtilis b213 was investigated. By gel filtration of a cell free extract of this organism three enzyme fractions were obtained from which five multifunctional components of fengycin synthetase were separated by high resolution anion-exchange FPLC procedures. These proteins were characterized by their thioester formation activities with ¹⁴C-labeled substrate amino acids and by N-terminal sequencing. Correlation of these data with the DNA sequences of the pps (fen) operons in three B. subtilis strains provided detailed knowledge on the structural and functional organization of fengycin synthetase.     

The product of theade1 gene inSchizosaccharomyces pombe: A bifunctional enzyme catalysing two distinct steps in purine biosynthesis

Summary The assignment of the knownade genes to steps in purine biosynthesis inSchizosaccharomyces pombe has been completed with the demonstration that anade3 mutants lacks FGAR amidotransferase,ade1A mutants lack GAR synthetase andade1B mutants lack AIR synthetase. A comparison of enzyme activity with map position forade1 mutants shows that (1) complementingade1A mutants lack GAR synthetase but possess wild type amounts of AIR synthetase, (2) complementingade1B mutants lack AIR synthetase but posses variable amounts of GAR synthetase, (3) non-complementing mutants lack both activities. In wild type strains the two activities fractionate together throughout a hundred-fold purification. Hence theade1 gene appears to code for a bifunctional enzyme catalysing two distinct steps in purine biosynthesis. The two activities are catalysed by two different regions of the polypeptide chain which can be altered independendently by mutation. Gel filtration studies on partially purified enzymes from wild type and various complementing mutant strains, indicate that the bifunctional enzyme is a multimer consisting of between four and six sub-units of 40,000 daltons each. GAR synthetase activity is associated with both the monomeric and multimeric forms but AIR synthetase is only associated with the multimer. A comparison of enzyme levels between diploids and their original complementing haploid strains suggests that complementation is due to hybrid enzyme formation.     

Evolutionary relationships of bacterial and archaeal glutamine synthetase genes

Glutamine synthetase (GS), an essential enzyme in ammonia assimilation and glutamine biosynthesis, has three distinctive types: GSI, GSII and GSIII. Genes for GSI have been found only in bacteria (eubacteria) and archaea (archaebacteria), while GSII genes only occur in eukaryotes and a few soil-dwelling bacteria. GSIII genes have been found in only a few bacterial species. Recently, it has been suggested that several lateral gene transfers of archaeal GSI genes to bacteria may have occurred. In order to study the evolution of GS, we cloned and sequenced GSI genes from two divergent archaeal species: the extreme thermophile Pyrococcus furiosus and the extreme halophile Haloferax volcanii. Our phylogenetic analysis, which included most available GS sequences, revealed two significant prokaryotic GSI subdivisions: GSI-a and GSI-. GSIa-genes are found in the thermophilic bacterium, Thermotoga maritima, the low G+C Gram-positive bacteria, and the Euryarchaeota (includes methanogens, halophiles, and some thermophiles). GSI--type genes occur in all other bacteria. GSI-- and GSI--type genes also differ with respect to a specific 25-amino-acid insertion and adenylylation control of GS enzyme activity, both absent in the former but present in the latter. Cyanobacterial genes lack adenylylation regulation of GS and may have secondarily lost it. The GSI gene of Sulfolobus solfataricus, a member of the Crenarchaeota (extreme thermophiles), is exceptional and could not be definitely placed in either subdivision. The S. solfataricus GSI gene has a shorter GSI--type insertion, but like GSI-a-type genes, lacks conserved sequences about the adenylylation site. We suspect that the similarity of GSI- genes from Euryarchaeota and several bacterial species does not reflect a common phylogeny but rather lateral transmission between archaea and bacteria.Correspondence to: J.R. Brown 1073     

Structural property,molecular regulation,and functional diversity of glutamine synthetase in higher plants: a data-mining bioinformatics approach

Glutamine synthetase (GS; E.C.6.3.1.2) is a key enzyme in higher plants with two isozymes, cytosolic GS1 and plastidic GS2, and involves in the assimilation and recycling of NH₄⁺ ions and maintenance of complex traits such as crop nitrogen-use efficiency and yield. Our present understanding of crop nitrogen-use efficiency and its correlation with the functional role of the GS family genes is inadequate, which delays harnessing the benefit of this key enzyme in crop improvement. In this report, we performed a comprehensive investigation on the phylogenetic relationship, structural properties, complex multilevel gene regulation, and expression patterns of the GS genes to enrich present understanding about the enzyme. Our Gene Ontology and protein–protein interactions analysis revealed the functional aspects of GS isozymes in stress mitigation, aging, nucleotide biosynthesis/transport, DNA repair and response to metals. The insight gained here contributes to the future research strategies in developing climate-smart crops for global sustainability.     

Cloning and Expression of Pseudomonas taetrolens Y-30 Gene Encoding Glutamine Synthetase: An Enzyme Available for Theanine Production by Coupled Fermentation with Energy Transfer

Glutamine synthetase (GS) of Pseudomonas taetrolens Y-30 can form theanine from glutamic acid and ethylamine in a mixture where yeast fermentation of sugar is coupled for ATP regeneration (coupled fermentation with energy transfer). From a genomic DNA library of P. taetrolens Y-30, a clone containing 6 kbp insertional DNA fragment was selected by the PCR screening technique with specific oligonucleotide primers for the GS gene. The fragment had an open reading frame of the GS gene encoding a protein of 468 amino acids (molecular mass, 52 kDa). The deduced amino acid sequence showed a significant homology with that of P. syringae pv. tomato GS (97%), and all the amino acid residues were fully conserved, which concern with catalytic activity in other bacterial GS. A tyrosine residue for adenylylation of GS was also found, and in vivo adenylylation was confirmed in P. taetrolens Y-30. The isolated GS gene was ligated into an expression vector (pET21a), and expressed in Escherichia coli AD494 (DE3). The enzyme productivity in the expression system was 30-fold higher than that in P. taetrolens Y-30. Recombinant GS had the same properties as those of unnadenylylated intrinsic GS, and formed theanine in the mixture of coupled fermentation with energy transfer.     

芍药内生真菌的鉴定及产生活性次生代谢产物的评估

【目的】研究药用植物芍药(Paeonia lactiflora Pall.)内生真菌的种群多样性,同时对其可能存在的聚酮合酶(Polyketide synthase,PKS)和非核糖体多肽合成酶(Non-ribosomal peptide synthetase,NRPS)基因多样性进行评估,预测芍药内生真菌产生活性次生代谢产物的潜力。【方法】采用组织分离法获得芍药根部内生真菌菌株,结合形态学特征和ITS序列分析,进行鉴定;利用兼并性引物对内生真菌中存在的聚酮合酶(PKS)基因和非核糖体多肽合成酶(NRPS)基因进行PCR扩增及序列测定分析,构建系统发育树,明确芍药内真菌PKS基因序列和NRPS基因序列的系统进化地位。【结果】从芍药组织块中共分离得到105株内生分离物,去重复后获得52株内生真菌,菌株ITS基因序列信息显示,52株芍药内生真菌隶属于7目、13科、15属,其中小球腔菌属(Leptosphaeria)、土赤壳属(Ilyonectria)和镰孢属(Fusarium)为优势种群;从52株内生真菌中筛选获得13株含PKS基因片段的菌株,8株含NRPS基因片段的菌株,部分菌株功能基因的氨基酸序列与Gen Bank中已知化合物的合成序列具有一定的同源性,预示芍药根部内生真菌具有合成丰富多样的次生代谢产物的潜力。【结论】药用植物芍药根部具有丰富的内生真菌资源,且具有产生活性次生代谢产物的潜力,值得进一步开发研究和应用。