细胞穿膜肽入胞检测方法概述

迄今为止,已有多达上百种的细胞穿膜肽(cell-penetrating peptides,CPPs)被发现报道,但这类多肽分子的入胞能力参差不齐,限制了其作为药物载体的应用。虽然已有多种实验方法可用于细胞穿膜肽入胞的检测,但由于缺乏通用的技术来确切证实CPPs的入胞能力,所以应当结合使用多种方法以降低误差。对不同的技术在检测CPPs入胞时的优缺点进行比较,并针对性地提出比较理想的解决方案,可为制订CPPs入胞标准化检测步骤提供一些参考。     

一种新的大分子纳米载体—细胞穿透肽的研究和应用进展

自从20年余前第一次发现细胞穿透肽(cell-penetrating peptides,CPPs)以来,细胞穿透肽新家族成员的发掘和应用研究发展迅速。这些短肽可以通过共价或非共价连接形式穿过细胞膜,并且可以携带多种没有能力克服细胞膜通透性障碍的分子进入细胞。作为纳米级转运载体,大多数CPPs是无毒的,并已成为药物治疗、诊断以及蛋白质、核酸功能等方面研究的新型潜在工具。该文重点从CPPs的分类、结构与功能关系、跨膜机制、细胞器定位、细胞毒性、与外源物质连接方式以及应用等方面介绍了国际上有关CPPs的研究进展及其存在的挑战和未来前景。     

细胞穿透肽的转导机制及应用现状

为解决外源性物质通过有效传递由胞外运输至胞内的难题,具有运载和穿透细胞膜的短肽类物质近年来受到极大的关注。细胞穿透肽(cell-penetrating peptides, CPPs)是一种一般少于30个氨基酸残基,自身能够携带外源性物质进入细胞内的多肽类物质,它们能够以多种方式通过与细胞膜的相互作用穿透其屏障而作用于细胞内。本研究就CPPs的转导方式和转导机制进行详细的综述,对当前需解决的问题进行了说明,并阐述了穿透肽在预防和治疗的应用情况,为CPPs的设计和临床应用等方面提供理论参考。     

细胞穿透肽在肿瘤治疗中的应用

随着人类对基因组信息解读的不断深入,越来越多的生物大分子作为候选药物进入生物治疗领域。但细胞表面的脂质双层膜具有选择通透性,这种天然屏障作用在保护细胞的同时也限制了绝大多数生物大分子进入细胞内部发挥治疗效应。目前流行的入胞转运方式如电穿孔、脂质体转染等均存在对细胞的额外毒副作用,且作用范围局限于体外实验。细胞穿透肽是一类以非受体依赖方式,非经典内吞方式直接穿过细胞膜进入细胞的多肽。它们可以与多种生物活性物质连接并携带其进入细胞,这一特性为它们成为理想的药物载体提供了可能。本文对使用细胞穿透肽作为载体转运具有抗癌作用的生物大分子进入细胞的抗癌实验予以介绍。     

细胞穿膜肽介导生物大分子入胞机制研究进展

生物大分子药物与传统治疗方式相比作用靶点具有高度的专一性,成为21世纪药物研发中最具发展前景的领域之一,但由于细胞膜的天然屏障作用致使许多潜在的胞内药物靶标无法应用于新药研究。细胞穿膜肽(cell-penetrating peptides,CPP)是一类具有穿膜功能的小分子短肽,可高效携带核酸、蛋白质等生物大分子穿过细胞膜进入胞质发挥功能,在介导生物大分子药物入胞上有着高效、低毒等诸多优势,但仍存在效率低、靶向性差等问题。CPP携带货物分子入胞的方式可以根据是否依赖能量分为直接入胞和内吞。直接入胞依据孔隙形成的方式不同分为四种模型:桶板模型、超环面模型、地毯模型和反向胶团模型。内吞则根据受体的不同又分为巨胞饮、网格蛋白介导的内吞、小窝蛋白介导的内吞、硫酸乙酰肝素蛋白聚糖介导的内吞以及神经毡蛋白-1介导的内吞。CPP自身的类型、浓度、效应分子的物理化学性质以及分子大小都会影响CPP的入胞过程,进而决定CPP携带生物大分子入胞的途径。对CPP介导生物大分子的入胞机制进行综述,为研究更加高效、靶向性强的CPP提供依据,从而推动其在生物、医学领域的应用。     

新型细胞穿膜肽的鉴定方法与其在抗肿瘤治疗中的应用

如何将生物活性分子高效投递到靶标的细胞和组织仍然是生物治疗领域研究人员面临的难题之一。直到细胞穿膜肽(cell penetrating peptides, CPPs)的出现,其可介导多种外源性功能分子(核酸、多肽、蛋白质和化学药物)进入细胞,而且不影响外源活性分子的功能发挥。另外,CPPs在传递外源活性成分进入肿瘤组织和细胞方面表现出更具应用前景的优势。因此,通过对CPPs的分类、鉴定方法、穿膜机制、其在抗肿瘤治疗中的最新应用以及尚需要解决的问题进行综述,以期为新型CPPs的鉴定和其抗肿瘤治疗策略提供参考。     

细胞穿膜肽的穿膜活性与序列特征的关系

细胞穿膜肽(cell penetrating peptides,CPPs)是一种小分子多肽,能够容易地穿过细胞膜.这类分子,尤其是具有靶向功能的CPPs为高效率投送药物到靶细胞带来希望.因此,对其展开研究对于生物医学有着一定的意义.本工作主要从序列水平对具有不同穿膜活性的CPPs进行研究,试图找出影响CPPs穿膜活性的因素,以及不同活性CPPs与非穿膜肽(Non CPPs)序列上的差异,并引入一种分析生物序列的方法.我们基于CPPsite数据库和不同的文献获取CPPs和Non CPPs序列,并进一步从CPPs序列中提取具有高、中、低穿膜活性的穿膜肽(HCPPs、MCPPs、LCPPs)用于构建数据集.基于这些数据集,开展了以下研究:首先,利用方差分析的方法,对不同活性的CPPs以及Non CPPs的氨基酸及二级结构组成进行分析,发现氨基酸的静电与疏水相互作用对CPPs的穿膜活性起到了重要影响,同时螺旋结构和无规卷曲也会影响CPPs的穿膜活性;其次,使用理化性质与长度将不同活性的CPPs展示在二维平面上,发现在某些特殊的性质下不同活性的CPPs与Non CPPs可以产生聚簇现象,HCPPs、MCPPs以及LCPPs和Non CPPs被分成了三簇,这种现象显示了它们之间的差异;最后,本文引入了生物序列理化质心的概念,将组成序列的残基看作质点,进而把序列抽象成质点系进行研究,并将此方法应用到CPPs的分析中,通过PCA方法将不同活性的CPPs投射到三维平面上,结果发现绝大部分CPPs聚在一起,部分LCPPs与Non CPPs聚在一起.此工作对于CPPs的设计,以及理解不同活性CPPs序列上的差异具有一定的意义.另外,本文引入的生物序列理化质心的分析方法也可以用于其他生物问题的分析,同时它们可以作为某些生物分类问题的输入参数,在模式识别中起到一定的作用.     

通过核质转运调节细胞凋亡的蛋白质

凋亡,也称Ⅰ型程序性细胞死亡,是细胞在面临严重威胁时发起的保护性主动死亡机制. 凋亡对于个体的生长发育及各种生理功能具有不可或缺的作用. 作为涉及整个细胞的复杂过程,凋亡的顺利进行有赖于众多凋亡相关因子的协调合作与精确调控. 细胞受到凋亡刺激后,核内的某些蛋白质转运出核,将凋亡信号传递到核外,胞质内的多种蛋白质则转运入核,在细胞核这一信息整合的大本营直接发挥作用. 这种双向交流机制在胞核与胞质间建立起密切的联系,同时使得相关蛋白质在特定场所发挥促进或抑制凋亡的作用,确保凋亡信号及时、通畅、有序地传递. 因此,蛋白质的核质转运作为介导胞核与胞质物质交换、信号交流的关键机制,在凋亡过程中就显得尤为重要. 本文主要就核质转运的机制、通过核质转运调节凋亡的蛋白质及其作用机理作一综述.     

细胞渗透肽的研究近况

细胞渗透肽是一类能携带大分子物质进入细胞的短肽,其跨膜能力不依赖经典的胞吞作用,被认为是一种理想的运载工具,在将蛋白质和其他分子导入活细胞的研究中有着广泛的应用前景.该文着重介绍细胞渗透肽的跨膜转运机制及其应用等.     

蛋白转导域内在化机制的研究进展

蛋白转导域（protein transduction domain,PTD）可以携带外源生物大分子进入细胞,在分子生物学、细胞生物学的基础研究及生物技术应用中,都展示出良好的前景,应用广泛,但机制不甚明确。已知的PTD均有其关键的特定氨基酸存在和较强的正电荷分布,并具有独特的二级结构及空间构象,这些特殊的结构特征对其内在化机制起决定作用。目前认为巨胞饮作用是PTD入胞的主要机制,PTD在经过细胞表面糖胺聚糖紧密结合快速作用及电荷作用后,由脂筏蛋白介导的巨胞饮作用内在化,然后巨胞饮体脂质双层破裂,使蛋白转导域．大分子释放入胞浆及胞核。     

穿膜肽的内化机制及其应用

穿膜肽是一类具有特殊穿膜功能的多肽分子,能携带其它分子甚至超分子颗粒穿膜进入细胞内部．早期研究认为,其进胞是一种无需受体、也不存在饱和状态的非经典胞吞行为．近年研究表明,其穿膜机制可能与其含有的氨基酸种类有很大关系．现在,穿膜肽的穿膜过程称为巨型胞饮行为,它与传统的胞吞形式很相似．当然,还可能存在着其它的进胞方式而没有被证明或发现．关于穿膜肽的应用也是人们最感兴趣的,在很多领域的研究都在进行并不断取得进展．不论是生物界还是医学界,穿膜肽都被认为将是一类非常有发展潜力的多肽分子．     

Effects of cargo molecules on the cellular uptake of arginine-rich cell-penetrating peptides

The identification of cell-penetrating peptides (CPPs) as vectors for the intracellular delivery of conjugated molecules such as peptides, proteins, and oligonucleotides has emerged as a significant tool to modulate biological activities inside cells. The mechanism of CPP uptake by the cells is still unclear, and appears to be both endocytotic and non-endocytotic, depending on the CPP and cell type. Moreover, it is also unknown whether cargo sequences have an effect on the uptake and cellular distribution properties of CPP sequences. Here, we combine results from quantitative fluorescence microscopy and binding to lipid membrane models to determine the effect of cargo peptide molecules on the cellular uptake and distribution of the arginine-rich CPPs, R₇, and R₇W, in live cells. Image analysis algorithms that quantify fluorescence were used to measure the relative amount of peptide taken up by the cell, as well as the extent to which the uptake was endocytotic in nature. The results presented here indicate that fusion of arginine-rich CPPs to peptide sequences reduces the efficiency of uptake, and dramatically changes the cellular distribution of the CPP from a diffuse pattern to one in which the peptides are mostly retained in endosomal compartments.     

Effects of cargo molecules on the cellular uptake of arginine-rich cell-penetrating peptides

The identification of cell-penetrating peptides (CPPs) as vectors for the intracellular delivery of conjugated molecules such as peptides, proteins, and oligonucleotides has emerged as a significant tool to modulate biological activities inside cells. The mechanism of CPP uptake by the cells is still unclear, and appears to be both endocytotic and non-endocytotic, depending on the CPP and cell type. Moreover, it is also unknown whether cargo sequences have an effect on the uptake and cellular distribution properties of CPP sequences. Here, we combine results from quantitative fluorescence microscopy and binding to lipid membrane models to determine the effect of cargo peptide molecules on the cellular uptake and distribution of the arginine-rich CPPs, R7, and R7W, in live cells. Image analysis algorithms that quantify fluorescence were used to measure the relative amount of peptide taken up by the cell, as well as the extent to which the uptake was endocytotic in nature. The results presented here indicate that fusion of arginine-rich CPPs to peptide sequences reduces the efficiency of uptake, and dramatically changes the cellular distribution of the CPP from a diffuse pattern to one in which the peptides are mostly retained in endosomal compartments.     

Prediction of Cell-Penetrating Peptides

Cell-penetrating peptides, CPPs, are used as delivery vectors for pharmacologically interesting substances, such as antisense oligonucleotides, proteins and peptides. We present a general principle for designing cell-penetrating peptides derived from naturally occurring proteins as well as from randomly generated polyamino acid sequences. Thereby, we introduce a novel pharmacological principle for identification of cell-penetrating peptides for which the applications can be numerous, including cellular transduction vectors and mimics of intracellular protein–protein interactions. The methods of identifying a CPP comprises assessing the averaged bulk property values of the defined sequence, and ensuring that they fall within the bulk property value interval obtained from the training set. Despite this simplistic approach, the search criteria proved useful for finding CPP properties in either proteins or random sequences. We have experimentally verified cell-penetrating properties of 10–20-mer peptides derived from naturally occurring proteins as well as from random poly-amino acids. We note that since CPPs can be found in part of the protein sequences that may govern protein interactions, it is possible to produce cell-penetrating protein agonists or antagonists.     

PEP and CADY-mediated delivery of fluorescent peptides and proteins into living cells

Cell-penetrating peptides (CPPs) constitute a family of peptides with the characteristic ability to cross biological membranes and deliver cargo into the intracellular milieu. Several CPPs have been proposed for delivery of polypeptides and proteins into cells through either of two strategies: covalent or complexed in a non-covalent fashion. Members of the PEP family are primary amphipathic peptides which have been shown to deliver peptides and proteins into a wide variety of cells through formation of non-covalent complexes. CADY is a secondary amphipathic peptide which has been demonstrated to deliver short nucleic acids, in particular siRNA with high efficiency. Here we review the characteristics of the PEP and CADY carriers and describe a novel derivative of CADY termed CADY2, which also presents sequence similarities to Pep1. We have compared Pep1, CADY and CADY2 in their efficiency to interact with and internalize short fluorogenic peptides and proteins into cultured cells, and provide evidence that CADY2 can interact with proteins and peptides and deliver them efficiently into living cells, similar to Pep1, but in contrast to CADY which is unable to deliver any peptide, even short negatively charged peptides. This is the first study to investigate the influence of the cargo on the interactions between PEP and CADY carriers, thereby providing novel insights into the physicochemical parameters underlying interactions and cellular uptake of peptides and proteins by these non-covalent CPPs.     

Assessing the uptake kinetics and internalization mechanisms of cell-penetrating peptides using a quenched fluorescence assay

Cell-penetrating peptides (CPPs) have shown great potency for cargo delivery both in vitro and in vivo. Different biologically relevant molecules need to be delivered into appropriate cellular compartments in order to be active, for instance certain drugs/molecules, e.g. antisense oligonucleotides, peptides, and cytotoxic agents require delivery into the cytoplasm. Assessing uptake mechanisms of CPPs can help to develop novel and more potent cellular delivery vectors, especially in cases when reaching a specific intracellular target requires involvement of a specific internalization pathway. Here we measure the overall uptake kinetics, with emphasis on cytoplasmic delivery, of three cell-penetrating peptides M918, TP10 and pVec using a quenched fluorescence assay. We show that both the uptake levels and kinetic constants depend on the endocytosis inhibitors used in the experiments. In addition, in some cases only the internalization rate is affected by the endocytosis inhibitors while the total uptake level is not and vice versa, which emphasizes importance of kinetic studies when assessing the uptake mechanisms of CPPs. Also, there seems to be a correlation between lower total cellular uptake and higher first-order rate constants. Furthermore, this may indicate simultaneous involvement of different endocytic pathways with different efficacies in the internalization process, as hypothesized but not shown earlier in an uptake kinetics assay.     

Properties of cell penetrating peptides (CPPs)

Different approaches have been developed for the introduction of macromolecules, proteins and DNA into target cells. Viral (retroviruses, lentiviruses, etc.) and nonviral (liposomes, bioballistics etc.) vectors as well as lipid particles have been tested as DNA delivery systems. However, all of them share several undesirable effects that are difficult to overcome, such as unwanted immunoresponse and limited cell targeting. The discovery of the cell penetrating peptides (CPPs) showing properties of macromolecules carriers and enhancers of viral vectors, opened new opportunities for the delivery of biologically active cargos, including therapeutically relevant genes into various cells and tissues. This review summarizes recent data about the best characterized CPPs as well as those sharing cell-penetrating and cargo delivery properties despite differing in the primary sequence. The putative mechanisms of CPPs penetration into cells and interaction with intracellular structures such as chromosomes, cytoskeleton and centrioles are addressed. We further discuss recent developments in overcoming the lack of cells specificity, one of the main obstacles for CPPs application in gene therapy. In particular, we review a newly discovered affinity of CPPs to actively proliferating cells.     

Transduction of peptides and proteins into live cells by cell penetrating peptides

Internalization of peptides and proteins into live cells is an essential prerequisite for studies on intracellular signal pathways, for treatment of certain microbial diseases and for signal transduction therapy, especially for cancer treatment. Cell penetrating peptides (CPPs) facilitate the transport of cargo-proteins through the cell membrane into live cells. CPPs which allow formation of non-covalent complexes with the cargo are used primarily in this study due to the relatively easy handling procedure. Efficiency of the protein uptake is estimated qualitatively by fluorescence microscopy and quantitatively by SDS-PAGE. Using the CPP cocktail JBS-Proteoducin, the intracellular concentrations of a secondary antibody and bovine serum albumin can reach the micromolar range. Internalization of antibodies allows mediation of intracellular pathways including knock down of signal transduction. The high specificity and affinity of antibodies makes them potentially more powerful than siRNA. Thus, CPPs represent a significant new possibility to study signal transduction processes in competition or in comparison to the commonly used other techniques. To estimate the highest attainable intracellular concentrations of cargo proteins, the CPPs are tested for cytotoxicity. Cell viability and membrane integrity relative to concentration of CPPs are investigated. Viability as estimated by the reductive activity of mitochondria (MTT-test) is more sensitive to higher concentrations of CPPs versus membrane integrity, as measured by the release of dead cell protease. Distinct differences in uptake efficiency and cytotoxic effects are found using six different CPPs and six different adhesion and suspension cell lines.     

Efficient penetration of Scp01-b and its DNA transfer abilities into cells

The in vivo application potential of viral-based gene delivery approaches is hindered by a risk of insertional oncogenesis. Of the many delivery methods, cell-penetrating peptides (CPP)-based delivery has good biocompatibility and biodegradability. However, low efficiency is still the disadvantage of CPPs-based nucleic acid transfection, and delivery efficiency may vary from different CPPs. Here, we describe Scp01-b, as a new CPP, which can enter cultured cell lines and primary cultured cells examined by fluorescence microscopy and quantitative assay, the internalization process is a concentration, temperature, and incubation time-dependent manner. Scp01-b does not insert into the membrane directly and its uptake is mediated through endocytosis pathway. Moreover, Scp01-b could mediate the uptake of plasmid DNA into the Caski and HSC-T6 cells, and we noted that Scp01-b-mediated transfection efficiency was nearly the same with traditional liposome (TurboFectin)-mediated transfection. These findings suggest that Scp01-b can act as a useful tool for non-viral-based delivery in further application such as reprogramming and gene editing.     

Peptide-mediated protein delivery—Which pathways are penetrable?

The growing number of reports on the effective cargo delivery by cell-penetrating peptides (CPPs) has extensively widened our knowledge about the mechanisms involved in CPP-mediated delivery. However, the data available on the internalization mode of CPP–cargo complexes are often conflicting and/or equivocal. Moreover, the intracellular trafficking of CPP–cargo complexes is, to date, relatively unexplored resulting in only minimal information about what is really happening to the complexes inside the cell. This review focuses on defining the endocytic pathways engaged in the transduction of CPP–cargo complexes and seeks to determine the extent of different endocytic routes required for effective uptake. In addition, the intracellular pathways utilized during the trafficking and sorting of CPP–cargo complexes as well as the ultimate fate of the complexes inside cells will be discussed.