Phenotypic Diversity of Acer ginnala (Aceraceae) Populations at Different Altitude

In this study, we analyzed the phenotypic variation of Acer ginnala natural populations at different altitude in Qiliyu, investigated the level of phenotypic diversity by using ANOVA analysis, correlation analysis and cluster analysis. The results showed that there were significant differences in phenotypic variation among and within populations. Coefficient of variation (CV) varied from 705% to 3812%. High phonotypic diversity (1.9253) occurred within A.ginnala populations, the mean phenotypic diversity index of populations ranged from 1.9022 to 1.9837. Phenotypic differentiation coefficient (VST) among populations (13.79%) was less than that of within populations (86.21%). The variation within populations comprised a majority of total phenotypic variation. A significant relation had occurred between phenotypic traits and soil factors. Phenotypic diversity index had a very significant correlation with soil total nitrogen (P<0.05), no significant relation with altitude. Five populations gathered into two groups by cluster analysis, which consistent with the geographic distribution of Aginnala in Qiliyu. The traits variations of natural populations at different altitude were affected mainly by micro-environmental heterogeneity of different Aginnala populations. Utilizing of variation within and among populations is important significance for genetic improvement of A.ginnala.     

茶条槭不同海拔种群的表型多样性

为了揭示茶条槭（Acerginnala）不同海拔种群表型变异程度和变异规律,以山西七里峪天然分布的茶条槭为研究对象,调查不同海拔种群的种实和叶表型性状,采用方差分析、相关分析、聚类分析等方法,分析种群的表型多样性。结果表明：17个表型性状中16个存在显著差异,占总表型性状的94.12%。在物种水平上各个性状表现出较丰富的变异,变异系数（CV）在7.05%～38.12%之间。茶条槭种群具有高的表型多样性（1.9253）,5个不同海拔种群的平均表型多样性指数为1.9022～1.9837。种群间的表型分化系数均值（13.79%）小于种群内变异（82.71%）,种群内的变异是表型变异的主要来源。各表型性状及表型多样性指数与土壤中的N、K、AN、AK、AP、OR、MC表现出显著或极显著的相关关系（P〈0.05）,但与海拔高度呈现出不显著的相关性。UPGMA聚类分析显示5个种群形成明显的两组,与其地理分布相一致。不同海拔种群所处微生境的异质性是引起种群间差异的主要原因。茶条槭种群内、种群间变异的利用对其遗传改良具有重要的意义。     

Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps

Altitudinal gradients in mountain regions are short‐range clines of different environmental parameters such as temperature or radiation. We investigated genomic and phenotypic signatures of adaptation to such gradients in five Arabidopsis thaliana populations from the North Italian Alps that originated from 580 to 2350 m altitude by resequencing pools of 19–29 individuals from each population. The sample includes two pairs of low‐ and high‐altitude populations from two different valleys. High‐altitude populations showed a lower nucleotide diversity and negative Tajima's D values and were more closely related to each other than to low‐altitude populations from the same valley. Despite their close geographic proximity, demographic analysis revealed that low‐ and high‐altitude populations split between 260 000 and 15 000 years before present. Single nucleotide polymorphisms whose allele frequencies were highly differentiated between low‐ and high‐altitude populations identified genomic regions of up to 50 kb length where patterns of genetic diversity are consistent with signatures of local selective sweeps. These regions harbour multiple genes involved in stress response. Variation among populations in two putative adaptive phenotypic traits, frost tolerance and response to light/UV stress was not correlated with altitude. Taken together, the spatial distribution of genetic diversity reflects a potentially adaptive differentiation between low‐ and high‐altitude populations, whereas the phenotypic differentiation in the two traits investigated does not. It may resemble an interaction between adaptation to the local microhabitat and demographic history influenced by historical glaciation cycles, recent seed dispersal and genetic drift in local populations.     

Local adaptation within a hybrid species

Ecological divergence among populations may be strongly influenced by their genetic background. For instance, genetic admixture through introgressive hybridization or hybrid speciation is likely to affect the genetic variation and evolvability of phenotypic traits. We studied geographic variation in two beak dimensions and three other phenotypic traits of the Italian sparrow (Passer italiae), a young hybrid species formed through interbreeding between house sparrows (P. domesticus) and Spanish sparrows (P. hispaniolensis). We found that beak morphology was strongly influenced by precipitation regimes and that it appeared to be the target of divergent selection within Italian sparrows. Interestingly, however, the degree of parental genetic contribution in the hybrid species had no effect on phenotypic beak variation. Moreover, beak height divergence may mediate genetic differentiation between populations, consistent with isolation-by-adaptation within this hybrid species. The study illustrates how hybrid species may be relatively unconstrained by their admixed genetic background, allowing them to adapt rapidly to environmental variation.     

青藏高原垂穗披碱草遗传变异的地理因素分析

采用等位酶标记对我国青藏高原地区垂穗披碱草的9个种群进行遗传变异和系统关系分析.结果表明,不同种群间遗传距离范围在0.010 6-0.377 8,种群间遗传距离和地理环境关系密切.采用聚类分析和二维、三维Mantel检验,对青藏高原垂穗披碱草(Elymusnutans Griseb.)不同种群间遗传距离与环境条件的关系(纬度、经度和海拔)进一步分析发现,海拔和地理位置(纬度和经度)均明显影响垂穗披碱草种群遗传差异.种群间遗传距离和海拔(R=0.476 8)、地理位置(R=0.447 1)均呈现显著正相关,种群间遗传距离随着海拔、地理位置差距的增大而增加,但海拔是影响其遗传结构的最重要因素,其次是经纬度.     

Patterns of Genetic Variation across Altitude in Three Plant Species of Semi-Dry Grasslands

Background

Environmental gradients caused by altitudinal gradients may affect genetic variation within and among plant populations and inbreeding within populations. Populations in the upper range periphery of a species may be important source populations for range shifts to higher altitude in response to climate change. In this study we investigate patterns of population genetic variation at upper peripheral and lower more central altitudes in three common plant species of semi-dry grasslands in montane landscapes.

Methodology/Principal Findings

In Briza media, Trifolium montanum and Ranunculus bulbosus genetic diversity, inbreeding and genetic relatedness of individuals within populations and genetic differentiation among populations was characterized using AFLP markers. Populations were sampled in the Swiss Alps at 1800 (upper periphery of the study organisms) and at 1200 m a.s.l. Genetic diversity was not affected by altitude and only in B. media inbreeding was greater at higher altitudes. Genetic differentiation was slightly greater among populations at higher altitudes in B. media and individuals within populations were more related to each other compared to individuals in lower altitude populations. A similar but less strong pattern of differentiation and relatedness was observed in T. montanum, while in R. bulbosus there was no effect of altitude. Estimations of population size and isolation of populations were similar, both at higher and lower altitudes.

Conclusions/Significance

Our results suggest that altitude does not affect genetic diversity in the grassland species under study. Genetic differentiation of populations increased only slightly at higher elevation, probably due to extensive (historic) gene flow among altitudes. Potentially pre-adapted genes might therefore spread easily across altitudes. Our study indicates that populations at the upper periphery are not genetically depauperate or isolated and thus may be important source populations for migration under climate change.     

Morphological and genetic differentiation in Isodon umbrosus by altitudinal variation in bumblebee pollinator assemblages

The corolla tube length of the bumblebee-pollinated plant Isodon umbrosus shows conspicuous geographical variation, corresponding with the proboscis length of its bumblebee pollinators across its distributional range. We hypothesized that altitudinal variation in the pollinator assemblage is a principal factor mediating morphological and genetic differentiation among I. umbrosus populations. We examined determinants of the morphological and genetic differentiation of Isodon umbrosus by analyzing floral morphology and allozyme variation across the distributional range. A reanalysis of previous data confirmed that altitude was a good indicator of pollinator assemblages. Corolla tube length was highly variable among the 15 study populations, and genetic differentiation among the populations ( G _ST = 0.360) was also highly significant. The differentiation in corolla tube length was explained by altitudinal difference, a proxy of the difference in pollinator assemblages. Genetic differentiation among populations also tended to be affected by the same factor, but statistical support was weak. To better understand the mechanisms responsible for morphological and genetic differentiation in I. umbrosus , we need to investigate altitudinally different populations over a narrower geographical scale.     

Phenotypic and allozyme variation in Mediterranean and desert populations of wild barley,Hordeum spontaneum Koch

Populations of wild barley, Hordeum spontaneum Koch, were collected in two distinct climatic regions, desert and Mediterranean. Plants from five desert and five Mediterranean populations were compared and contrasted for extent and structure of phenotypic variation. These same 10 and one other population from each region were analyzed for allozyme variation. In a field trial of phenotypic diversity, two phenological and 14 morphological traits were examined. Study of allozyme variation was performed using eight enzyme systems encoding for 13 loci. Plants from the desert and Mediterranean regions were significantly different in seven of 16 phenotypic traits, exhibited a high (30%) interregional component of phenotypic variation, and showed a high degree of segregation on a principal component scattergram indicating ecotypic differentiation. Mediterranean populations were twice as variable as desert populations in reproductive growth parameters (stem and spike length) and grain filling (spikelet weight), but half as variable for onset of reproduction. The extent and structure of phenotypic and allozyme variation did not match. The Mediterranean and desert populations did not differ in amount of allozyme variation as estimated by mean number of alleles per locus, effective number of alleles, polymorphism, and gene diversity (n(a), n(e), P, and H(e)), did not segregate on the basis of population genetic distances, and exhibited a low proportion of interregion allozyme diversity (2%). No effect of selection on allozyme distribution was detected. Our results suggest that the adaptation of plants originating from desert and Mediterranean environments is reflected in phenotypic but not in allozyme variation.     

Spanish population of Gremmeniella abietina is genetically unique but related to type A in Europe

Genetic structure of the European Gremmeniella abietina var. abietina was analyzed in this study. Ninety-two Spanish isolates, six Swiss isolates of Alpine biotype, 76 Finnish isolates of biotype A and 54 Finnish and seven Russian isolates of biotype B were collected. Genetic variation of different populations was analyzed using sequence analysis of specifically amplified markers GAAA1000, GAAA800 and ACA900. Variation in the GAAA1000 marker was significant, and composed of 33 alleles divided into the following four studied populations: five alleles in the Alpine type, 12 in biotype B, 16 in biotype A and two in the Spanish population. Based on variation in GAAA1000 marker, a subset of isolates were further analyzed using GAAA800 and ACA900 sequences, which showed lower overall genetic variability, and no variation among the Spanish population. Genetic differentiation analysis revealed a high genetic differentiation among populations. Finally, clustering analysis of GAAA1000 sequences showed that the Spanish isolates clearly separated from the rest of the biotypes, whereas the Alpine type was closely related to the B type. However, one of the A-type isolates had an identical GAAA1000 allele with the prevailing allele among Spanish isolates. Altogether, our data suggest that the Spanish population is genetically highly differentiated from any other G. abietina population in Europe with a probable A-type origin.     

DIFFERENTIATION AMONG NINE POPULATIONS OF PHLOX. I. ELECTROPHORETIC AND QUANTITATIVE VARIATION

The organization of genetic variation in Phlox drummondii was investigated using both allozyme electrophoresis and quantitative genetics. Variation at five polymorphic enzyme loci was characterized in nine populations, and variation in 16 morphological and life-history characters was examined using an analysis of full- and half-sibs in seven populations. Significant levels of genetic variation were found at enzyme loci and for metric characters. Significant heritabilities were observed for 15 of the 16 characters examined. Genetic differences among populations were revealed both by Nei's genetic distance and by phenotypic differences, summarized by discriminant analysis. Partitioning variance in allozyme frequencies among hierarchical levels of genetic organization indicated that 94% of this variance lay within populations, 4% between populations within varieties, and 2% between varieties. Partitioning phenotypic variance for metric characters indicated that 73% lay within populations, 24% lay between populations within varieties, and 3% lay between varieties. Thus, both electrophoretic and metric characters indicated that despite extensive genetic differentiation among populations, most of the evolutionary potential of the species lies within populations.     

Geographic patterns of genetic differentiation and plumage colour variation are different in the pied flycatcher (Ficedula hypoleuca)

The pied flycatcher is one of the most phenotypically variable bird species in Europe. The geographic variation in phenotypes has often been attributed to spatial variation in selection regimes that is associated with the presence or absence of the congeneric collared flycatcher. Spatial variation in phenotypes could however also be generated by spatially restricted gene flow and genetic drift. We examined the genetic population structure of pied flycatchers across the breeding range and applied the phenotypic Q _ST ( P _ST)– F _ST approach to detect indirect signals of divergent selection on dorsal plumage colouration in pied flycatcher males. Allelic frequencies at neutral markers were found to significantly differ among populations breeding in central and southern Europe whereas northerly breeding pied flycatchers were found to be one apparently panmictic group of individuals. Pairwise differences between phenotypic ( P _ST) and neutral genetic distances ( F _ST) were positively correlated after removing the most differentiated Spanish and Swiss populations from the analysis, suggesting that genetic drift may have contributed to the observed phenotypic differentiation in some parts of the pied flycatcher breeding range. Differentiation in dorsal plumage colouration however greatly exceeded that observed at neutral genetic markers, which indicates that the observed pattern of phenotypic differentiation is unlikely to be solely maintained by restricted gene flow and genetic drift.     

不同海拔高度大血藤群体遗传多样性的RAPD分析及其与环境因子的相关性

利用 RAPD技术分析了分布于浙江省天台山 3个不同海拔高度的天然大血藤群体的遗传多样性、遗传分化以及与环境因子的相关性。 13种随机引物在 3 6株个体中共检测到 88个可重复的位点 ,其中多态位点 74个 ,总多态位点百分率为84.0 9% ,大血藤具有丰富的遗传多样性。 Shannon信息指数显示的遗传多样性以海拔 950 m的群体为最高 ,其次是海拔 73 0 m的群体 ,最低的是海拔 52 0 m的群体 ;群体内的遗传多样性占总遗传多样性的 43 .68% ,群体间的遗传多样性占 56.3 2 %。 Nei指数估计大血藤群体间的遗传分化系数为 0 .540 6,大血藤群体间的基因流很低。大血藤海拔 73 0 m群体与海拔 52 0 m群体的遗传相似度较高 ,海拔 950 m群体与其它两群体的遗传相似度较低。大血藤群体内的遗传多样性与土壤总氮呈极显著的正相关。     

Micro-evolution in the weevil genus Larinus: the formation of host biotypes and speciation

Data are presented on allozyme variation between 15 populations of the stenophagous capitulum weevil, Larinus cynarae , and three populations of its congener, L. latus , that had been collected throughout the northern mediterranean range of these species. A phenetic analysis of these data revealed no direct relationship between genetic variation and host-plant association within L. cynarae , but there was a strong geographical structuring of allozyme patterns. Most of the genetic variation was due to differences between geographical regions and variation within these was small. Wright's F _ST values showed that Italian and Greek populations of L. cynarae were most distinct from L. latus , with southern Iberian, northern Spanish and French populations increasingly less so. This pattern was associated with a cline in the frequencies of certain alleles along this geographical arc from France to Greece. A phenogram of Nei's genetic distances indicated the close genetic relationship between the two species of Larinus and separated the populations of L. cynarae into three allopatric groups. These groups have different host-plant spectra - dominated by Cynara cardunculus in Italy and Greece, Cynara humilis/Onopordum in southern Iberia and Onopordum spp. in France/Northern Spain - and can be considered to be host biotypes of L. cynarae. L. latus , which occurs in Greece and further east is also an Onopordum specialist. An analysis of the phylogeny of this group of Larinus indicates a primary separation into eastern ( L. latus ) and western ( L. cynarae ) taxa, with further branching of the L. cynarae lineage into the putative host-biotypes. An hypothesis for the evolution of these taxa is given, based on the evolutionary history of host-plant taxa and geographical constraints.     

VARIATION IN LEAF DISSECTION AND LEAF ENERGY BUDGETS AMONG POPULATIONS OF ACHILLEA FROM AN ALTITUDINAL GRADIENT

The degree of leaf dissection differs dramatically among populations of the Achillea millefolium complex along an altitudinal gradient in the Sierra Nevada. The purpose of this study was to determine whether there was a genetic basis to differences in leaf shape among populations, and also to determine the importance of genetic variability within populations, plastic responses of leaf shape to the growth environment, and genetic differences among populations in plastic response to the environment. A second major goal of the research was to investigate the effects of differences in leaf dissection on the capacity for leaf temperatures to become uncoupled from air temperatures. Greenhouse experiments using clonal replicates of plants collected at different altitudes revealed that there were genetic differences among populations in the degree of dissection, and that other sources of phenotypic variation, such as plasticity, were also significant. Leaves from the highest altitude population had the most compact shape under all conditions, while those from lower altitude populations were always more open and highly dissected. In both simulations and actual measurements the dissected leaves of low altitude plants remained close to air temperatures, while the compact leaves of high altitude plants had the capacity to warm up substantially above air temperatures.     

How much genetic variation in fern populations is stored in the spore banks? A study of Athyrium filix-femina (L.) Roth

The genetic variation within spore banks of Athyrium filix-femina (L.) Roth from three sites in north-eastern Switzerland was investigated. At two sites spore banks were located beneath sporophyte populations. One collection site was 10Om away from a sporophyte population. The gametophytes grown from the soil samples, the dimensions of which were 4 × 4 × 1.5 cm, and sporophytes from each site were analysed electrophoretically for either three or four variable allozyme loci. The spore banks from the different soil samples within and between populations revealed a considerable amount of genetic diversity. The most frequent alleles within the two sporophyte populations were, with a few exceptions, also the most frequent within the spore banks. The influence of single sporophytic individuals on the genetic composition of microsites seems to be considerably reduced by stochastic processes such as soil movement or the action of earthworms, which promote the mixing of spores from different spatial and temporal origins. It was shown that spores remain viable after passing through the gut of earthworms and that spore banks from even small soil samples revealed genetic diversity and could lead to a large number of genetically distinct sporophytes. The results suggest that fertilization seems to be close to random because the sporophyte populations sampled were in Hardy-Weinberg equilibrium and had fixation index ( F _is) close to zero.     

Patterns and levels of genetic differentiation in North American populations of the Alaskan wheatgrass complex

Levels and distribution of genetic variation were assessed using six allozymes in 27 populations of Alaskan wheatgrass (Elymus alaskanus) from different locations in Canada, USA, Greenland and Russia to obtain information on the genetic structure of these populations. The enzyme systems were ACO, DIA, GPI, MDH, PGM and SKD. Allozyme variation at the species level was high, with 64.3% (Ps) of the loci being polymorphic, an average number of alleles per locus of 1.9 (As), and an average genetic diversity of 0.17 (Hes). Differentiation was found in the populations studied, with the following findings: (1) statistically significant differences were found in allele frequencies among populations for every polymorphic locus (P < 0.001); (2) 63% of the total allozyme variation at polymorphic loci was partitioned among populations (GST = 0.63); (3) relatively low mean genetic distances between the populations were obtained (mean D = 0.029); (4) the genetic structure of Russian populations are clearly distinct from the other populations, the cluster and principal component analyses revealed the same genetic patterns of relationships among populations. This study also indicates that E. alaskanus contains different levels of allozyme variation in its populations. Furthermore, some banding patterns at the loci Aco-1, Aco-2, Gpi-2, Mdh-1, Skd-1, Skd-2 can be used as markers to identify individual populations.     

Complex genetic diversity patterns of cryptic,sympatric brown trout (<Emphasis Type="Italic">Salmo trutta</Emphasis>) populations in tiny mountain lakes

Intraspecific genetic variation can have similar effects as species diversity on ecosystem function; understanding such variation is important, particularly for ecological key species. The brown trout plays central roles in many northern freshwater ecosystems, and several cases of sympatric brown trout populations have been detected in freshwater lakes based on apparent morphological differences. In some rare cases, sympatric, genetically distinct populations lacking visible phenotypic differences have been detected based on genetic data alone. Detecting such “cryptic” sympatric populations without prior grouping of individuals based on phenotypic characteristics is more difficult statistically, though. The aim of the present study is to delineate the spatial connectivity of two cryptic, sympatric genetic clusters of brown trout discovered in two interconnected, tiny subarctic Swedish lakes. The structures were detected using allozyme markers, and have been monitored over time. Here, we confirm their existence for almost three decades and report that these cryptic, sympatric populations exhibit very different connectivity patterns to brown trout of nearby lakes. One of the clusters is relatively isolated while the other one shows high genetic similarity to downstream populations. There are indications of different spawning sites as reflected in genetic structuring among parr from different creeks. We used >3000 SNPs on a subsample and find that the SNPs largely confirm the allozyme pattern but give considerably lower F _ST values, and potentially indicate further structuring within populations. This type of complex genetic substructuring over microgeographical scales might be more common than anticipated and needs to be considered in conservation management.     

Population genetic structure and differentiation of Anthoxanthum alpinum in the subalpine-alpine ecocline of Swiss Alps

Allozyme variation in 6 enzyme systems coding 10 loci was estimated for 18 subpopulations of Anthoxanthum alpinum from three altitudinal transects in two localities of the Swiss Alps. Mean proportions of polymorphic loci (95% criterion), average number of alleles per locus, and mean expected heterozygosity were 64.9%, 2.37 and 0. 252, respectively. Mean genetic distance among populations was 0.011, and 79% of the genetic variation resided within populations. Based on allozyme analysis, marginal subpopulations appeared to have similar level of genetic variability to central subpopulations. Relatively high genetic differentiation, low gene flow values and small neighbourhood sizes suggested that inbreeding followed by genetic drift was possible causes of lowgenetic variability in Arpette A. alpinum populations.     

阿尔卑斯山高山-亚高山过渡区高山黄花茅的群体遗传结构和分化研究

应用等位酶分析,在瑞士阿尔卑斯山的阿尔拜特(Arpette)和拜阿尔普(Belalp),沿三个不同的海拔梯度,研究了高山黄花茅3个自然居群的遗传变异和分化。研究结果表明,平均的多态性位点比例为64．9％,每个位点平均等位基因数为2．37,平均期望杂合性为0．252。亚居群间平均的遗传距离为0．011,发现79％的遗传变异存在于居群内。基于等位酶分析,边缘亚居群与中心亚居群似乎有类似的遗传变异性。相对比较高的遗传分化、低的亚居群间基因流和小的邻居大小值暗示,近交和随后的遗传漂变可能是导致阿尔拜特黄花茅居群遗传变异性较低的主要原因。     

基于种实性状的无患子天然群体表型多样性研究

无患子(Sapindus mukorossi Gaertn.)是我国长江以南地区传统的重要绿化树种,其果皮富含皂苷,种仁富含油脂,是国家林业局审定的新型木本油料树种之一。为揭示无患子群体间和群体内种实表型性状变异式样,采用单因素方差分析、巢式方差分析、相关分析和主成分分析等方法,对无患子13个天然群体的10个种实表型性状进行比较分析,研究其群体间和群体内种实表型多样性以及表型变异与地理生态因子间的相关性。结果表明:无患子种实表型性状变异系数平均为7.34%,在群体间和群体内均存在丰富的表型变异。表型性状分化系数平均为62.21%,群体间变异(39.93%)大于群体内(27.46%),是无患子种实表型性状变异的主要来源。多数性状在群体间差异显著,不同程度的表现出边缘群体易于分化的特点,但地理变化规律不连续,而在群体内不同性状的差异性亦不一致。种子形态受群体地理生态的影响较果实形态大,西北部群体种子趋于椭圆形,东部、南部则趋于圆球形;地理纬度、年平均气温与多数种实性状间呈显著相关,是无患子种实表型性状变异的主要地理生态影响因子。可见,无患子种实表型性状在群体间、群体内变异都较为丰富,这些变异是由遗传和环境因素共同作用的结果。群体间和群体内多层次的变异为无患子优良种质资源保育和利用提供了物质基础。