红树林土壤微生物的研究：过去、现在、未来

红树林土壤生境的独特性决定了其中微生物的多样性及其资源的珍稀性,对于红树林土壤微生物的研究正在成为热点。然而由于传统研究方法等因素的限制,至今人们对红树林土壤微生物的系统了解仍较为有限。近年来,基于16S rRNA,18S rRNA基因的各种分子微生物学技术的迅速发展,红树林土壤微生物的研究亦面临着崭新的局面。文中主要从红树林土壤微生物物种的多样性、生理生化类型的多样性及其在治理污染环境、生物修复作用中的可能性、有效性等方面阐述了红树林土壤微生物的研究进展,并以更合理、有效地开发利用红树林土壤微生物资源为目标,展望了21世纪,以新理念、新技术、新方法进行红树林土壤微生物研究及资源开发的巨大前景。     

红树林人工修复区根际微生物群落结构分析

目的:通过比较不同年份红树林修复区的根际微生物结构,建立微生物区系与修复质量的相关性,为红树林修复提供理论借鉴。方法:采集4年、8年、10年红树林修复区以及原生红树林的根际微生物,利用末端限制性片段长度多态性技术(Terminal Restriction Fragment Length Polymorphism,T-RFLP)、聚类分析(Cluster Analysis,CA)、主成分分析法(Principal Component Analysis,PCA)、α多样性分析法、文氏图、稀释性曲线等分析方法,研究不同样本间根际微生物的群落组成并进行差异性对比。结果:通过分析不同修复年限间根际微生物的短片段重复序列(Short Tandem Repeat,STR)测序结果,发现三个不同修复时间的红树林修复区和原生红树林根际微生物间均存在差异,10年修复区更加接近原生红树林,4年和8年修复区享有更加相似的微生物群落,且同原生红树林间存在较大差异。结论:修复区红树林的根际微生物群落结构会逐步向着原生红树林根际微生物群落结构演替,但这一过程并非简单的加和式线性变化,而是存在复杂性和年份突变性的可能。     

深港红树林沉积物微生物群落多样性及其与重金属的关系

为了探究重金属对红树林表层沉积物和根系沉积物微生物群落多样性的影响,于深圳福田红树林自然保护区、深圳湾红树林公园、坝光红树林以及香港米埔自然保护区采集了表层沉积物与根系沉积物样品,测定了沉积物中5种重金属(Cr、Ni、Cu、Zn、Pb)的含量,并采用污染负荷指数法(PLI)对重金属污染情况进行了评价。同时,利用Illumina Hi Seq二代高通量测序技术对沉积物细菌的16S r DNA V4可变区进行测序,并进行OTUs注释分类、聚类分析、α-多样性分析(Shannon指数)与Spearman相关性分析。结果表明:不同红树林之间的沉积物重金属含量差异显著(P0.05),米埔自然保护区潮滩区和红树林区的沉积物重金属区域污染负荷指数最高,分别为1.51和1.38,其次是深圳福田红树林自然保护区、深圳湾红树林公园和坝光红树林,区域污染负荷指数分别为0.45、0.31和0.21;表层沉积物和根系沉积物样品的主要优势菌,在门水平上为变形杆菌(Proteobackteria)、绿弯菌(Chloroflexi)、放线菌(Actinobacteria)、拟杆菌(Bacteroidetes)、厚壁菌(Firmicutes)等,在纲水平上为γ-变形杆菌(Gammaproteobacteria)、α-变形杆菌(Alphaproteobacteria)、δ-变形杆菌(Deltaproteobacteria)、厌氧绳菌(Anaerolineae)、β-变形杆菌(Betaproteobacteria)等;尽管微生物多样性分析结果显示沉积物微生物群落多样性与重金属污染无显著相关性(P0.05),但Spearman相关性分析结果表明重金属可能对某些门或纲(如BRC1门、ε-变形杆菌纲)的群落多样性产生显著影响(P0.05)。     

基于PCR-DGGE技术的红树林区微生物群落结构

【目的】为了解红树林沉积物中细菌的群落结构特征。【方法】应用PCR-DGGE技术对福建浮宫红树林的16个采样站位样品细菌的群落结构进行了研究。根据DGGE指纹图谱,对它们的遗传多样性进行了分析。【结果】各站位样品细菌多样性指数(H)、丰度(S)和均匀度(EH)均有所不同,这些差异与它们所处站位的不同有关,红树林区细菌多样性高于非红树林区细菌多样性。对不同站位细菌群落相似性分析,它们的相似性系数也存在一定的规律,同一断面的细菌群落结构相近性较高。对DGGE的优势条带序列分析,同源性最高的微生物分别属于变形菌门(Proteobacteria)、酸菌门(Acidobacteria)和绿菌门(Chlorobi),它们均为未培养微生物,分别来自于河口海岸沉积物。【结论】应用PCR-DGGE技术更能客观地反映红树林沉积物中真实的细菌群落结构信息。另外,研究也表明红树林区微生物多样性丰富,在红树林区研究开发未知微生物资源具有巨大的潜力。     

新书推介北大核心CSCD

红树林微生物天然产物化学研究 徐静编著;科学出版社化学分社;2015;页码：429;定价：128 内容简介：红树林微生物是一个寻找天然活性物质的巨大宝库,其独特的生境必然会造成独特而丰富的微生物类群。《红树林微生物天然产物化学研究》一书对红树林微生物及其代谢产物进行了全面介绍,描述化合物超过850个,其中新化合物480多个,生物活性产物270余个,系统地阐述了国内外红树林微生物来源天然产物化学研究的发展现状和研究成果。     

海南东寨港红树林土壤微生物初探

红树林是热带、亚热带海岸河口潮间带的木本植物群落。海南琼山市东寨港国家级红树林保护区是我国面积较大 ,种类较多的典型分布区[16 ] ,具有独特的生态 ,经济和旅游价值[1] 。不少学者对该红树林生态系统进行了群落学、物流、能流等方面的研究[2 ,3] ,但对该系统微生物方面的研究还较少见。微生物是生态系统的主要分解者 ,红树林生态系统有较高的生产力和凋落物量 ,微生物在凋落物和有机碎屑的分解转化中有着先锋地位[2 ] ,因此微生物在红树林生态系统的物流和能流中有着重要的推动作用。本文报道了对东寨港红树林区土壤微生物数量的研究 …     

红树林生态系统微生物驱动的氮素循环过程研究进展

微生物驱动的氮循环过程在红树林生态系统物质循环、净化外来污染物、维持生态系统平衡等方面起重要作用。相较于其他自然生态系统,因红树林处于沿海陆地交界地带,其氮循环过程及其相关微生物的种类丰富,受交错复杂的环境因素影响与调控。本文梳理了红树林土壤性质及特性,综述了红树林生态系统中由微生物驱动的固氮、氮素矿化、硝化、厌氧氨氧化、反硝化、异化硝酸盐还原为铵等主要的氮循环过程,并讨论了氮循环与其他循环的耦合过程。最后讨论pH、盐度、季节、螃蟹活动、红树林树种等环境因素对氮循环过程及其相关微生物丰度、多样性的影响。本综述以期为红树林湿地生态系统的保护和修复提供理论参考。     

沉积物中微生物资源的研究方法及其进展

沉积物生境条件特殊,含有丰富的微生物资源。作为自然界物质循环的主要推动力,沉积物中的微生物在水-沉积物的物质循环中起重要作用,水质变化如污染和富营养化反过来会引起沉积物中微生物群落的改变。沉积物中微生物多样性的研究,有助于从侧面了解上覆水水质、推测其污染及演化历史。沉积物中微生物物种、基因等资源的鉴定和获得,有助于丰富当前对微生物资源的认知领域,并为其在生物技术领域的应用奠定基础。研究描述了沉积物生境的一般特点,并对沉积物中微生物的多样性、微生物种质和基因资源等几个重要方面的研究方法和进展进行了综述。沉积物中微生物的研究是生物地球化学循环研究的基础,必将受到越来越广泛的关注。     

盐度对稀释平板法研究红树林区土壤微生物数量的影响

在使用稀释平板法分离潮间带红树林及其对照光滩土壤微生物以及计数时,多数情况下使用陈海水制作培养基和稀释水,很少考虑培养基和稀释水的盐度对最终计数结果的影响.使用稀释平板法研究了盐度对福建九龙江口红树林区与深圳福田红树林保护区土壤微生物平板计数的影响,结果表明培养基与稀释水盐度对微生物数量有明显的影响.统计分析显示细菌的海水稀释效果优于淡水,而放线菌与真菌则刚好相反(P<0.05,一个例外).海水不适合配制红树林区土壤微生物平板计数的培养基,从0～35,高盐度的平板培养基会降低微生物的数量,尤其是放线菌的数量,尽管培养基的盐度对真菌影响无规律,但细菌数量在低盐度时比在高盐度和不加氯化钠时要多.根据盐度效应,提出了稀释平板技术应用于潮间带的红树林及其相应光滩时的优化方法,认为细菌应该用海水作无菌稀释水,而放线菌和真菌则应用淡水作稀释水;包括光滩在内的红树林区土壤微生物分离与计数的培养基宜控制较低盐度范围.     

典型红树林生态系统藻类多样性及其在生态过程中的作用

藻类是红树林生态系统重要的生物类群, 根据生态习性可分为浮游植物、底栖微藻和大型藻类三个生态类群, 它们在红树林生态系统生物多样性、初级生产、元素循环等方面起着重要作用。但在红树林生态系统中, 关注重点多集中在红树植物和动物, 对其中的藻类重视不够, 且多数研究集中在近20年以及亚洲的红树林区。事实上, 红树林生态系统藻类非常丰富, 其多样性研究有助于深入揭示红树林生态系统的结构与功能。本文介绍了红树林生态系统藻类的组成类群及其重要性, 重点对红树林区浮游植物、底栖硅藻和大型海藻的种类组成、地理分布及其与初级生产力、水质污染、元素循环、碳库形成等生态过程中的作用的研究动态和进展等进行了总结。根据已有研究, 红树林区浮游植物和底栖硅藻的种类数一般为几十到上百种, 其中硅藻在种类和数量上都占绝对优势, 它们是重要的初级生产者、饵料生物和水质污染指示生物; 红树林区底栖大型藻类主要由红藻、绿藻、褐藻、蓝藻组成, 绿藻的种类较多, 红藻在数量上占优势; 藻类是红树林湿地碳库的重要贡献者, 在红树林湿地生态系统碳汇和碳循环中起重要作用。红树林生态系统是个高度动态和异质的系统, 今后应加强红树林藻类多样性的长周期、大尺度变化及不同生境藻类的综合研究, 关注大陆径流和潮汐对藻类多样性和蓝碳的影响, 借助沉积物藻类记录, 探明红树林区藻类的长周期变化, 反演气候变化和人类活动对红树林生态系统的影响过程和机制。     

Carbon and nutrient exchange of mangrove forests with the coastal ocean

Mangrove forests exchange materials with the coastal ocean through tidal inundation. In this study, we aim to provide an overview of the published data of carbon (C) and nutrient exchange of mangrove forests with the coastal ocean at different spatial scales to assess whether the exchange is correlated with environmental parameters. We collected data on C (dissolved and particulate organic C; DOC and POC) and nutrient exchange (dissolved and particulate nitrogen, N and phosphorus, P) and examined the role of latitude, temperature, precipitation, geomorphological setting, hydrology, dominant mangrove species and forest area in explaining the variability of the exchange. We identified that there are a range of methodologies used to determine material exchange of mangroves with the coastal zone, each methodology providing data on the exchange at different spatial scales. This variability of approaches has limited our understanding of the role of mangroves in the coastal zone. Regardless, we found that mangrove forests export C and nutrients to the coastal zone in the form of litter and POC. We found that precipitation is a major factor influencing the export of C in the form of litter; sites with low annual precipitation and high mean annual temperatures export more C as litter than sites with high precipitation and low temperature. Furthermore, export of POC is higher in zones with low mean annual minimum temperature. Identification of broad-scale trends in DOC and dissolved nutrients was more difficult, as the analysis was limited by scarcity of suitable studies and high variability in experimental approaches. However, tidal amplitude and the concentration of nutrients in the floodwater appears to be important in determining nutrient exchange. The strongest conclusion from our analysis is that mangrove forests are in general sources of C and nutrients in the form of litter and POC and that they are most likely to be exporting C subsidies in dry regions.     

Processes of organic carbon in mangrove ecosystems

In addition to carbon accumulation in plants, processes of organic carbon in mangrove ecosystems include origins of sediment organic carbon, carbon fluxes between mangroves and their adjacent systems (coastal waters and atmosphere), and cycling processes. Sediment organic carbon originates from suspending solids in coastal waters, mangrove plants and benthic algae. In mangroves with low organic carbon content in sediments, tidal seawater is the main origin of sediment organic carbon, while in mangroves with high sediment organic carbon contents, sediment organic carbon mainly originates from mangrove plants. Due to tidal flush, there is large material exchange between mangrove ecosystems and their adjacent coastal waters. In China, exports of organic carbon in litter falls and dissolved organic carbon from mangroves to their adjacent coastal waters have not been documented. Processes of mangrove litter falls, including production, decomposition, export and animal consumption, determine linkages among organic carbon among mangrove plants, secondary production and coastal ocean. Consumers especially benthic animals may influence organic carbon in mangrove ecosystems, because (1) their consumption rates are high, and their selective feeding on some food sources will change the relative quantities of export, bury and mineralization of organic carbon from different origins; (2) their consumption is much more than assimilation, resulting in the changes in sizes, forms and qualities of non-assimilated organic matters, and then the changes in availability of export, consumption or mineralization of organic carbon. Respiration and sulfate reduction are important mineralization processes of organic carbon in mangrove sediments. Mineralization rates of organic carbon in mangrove sediments are influenced by quantities, activities and particle sizes of organic matters, and other factors such as forest ages, root activities and animal burrowing activities. Researches on processes of mangrove organic carbon should be based on open systems, and ecological processes of organic carbon should be coupled with vegetation restoration.     

Processes of organic carbon in mangrove ecosystems

In addition to carbon accumulation in plants, processes of organic carbon in mangrove ecosystems include origins of sediment organic carbon, carbon fluxes between mangroves and their adjacent systems (coastal waters and atmosphere), and cycling processes. Sediment organic carbon originates from suspending solids in coastal waters, mangrove plants and benthic algae. In mangroves with low organic carbon content in sediments, tidal seawater is the main origin of sediment organic carbon, while in mangroves with high sediment organic carbon contents, sediment organic carbon mainly originates from mangrove plants. Due to tidal flush, there is large material exchange between mangrove ecosystems and their adjacent coastal waters. In China, exports of organic carbon in litter falls and dissolved organic carbon from mangroves to their adjacent coastal waters have not been documented. Processes of mangrove litter falls, including production, decomposition, export and animal consumption, determine linkages among organic carbon among mangrove plants, secondary production and coastal ocean. Consumers especially benthic animals may influence organic carbon in mangrove ecosystems, because (1) their consumption rates are high, and their selective feeding on some food sources will change the relative quantities of export, bury and mineralization of organic carbon from different origins; (2) their consumption is much more than assimilation, resulting in the changes in sizes, forms and qualities of non-assimilated organic matters, and then the changes in availability of export, consumption or mineralization of organic carbon. Respiration and sulfate reduction are important mineralization processes of organic carbon in mangrove sediments. Mineralization rates of organic carbon in mangrove sediments are influenced by quantities, activities and particle sizes of organic matters, and other factors such as forest ages, root activities and animal burrowing activities. Researches on processes of mangrove organic carbon should be based on open systems, and ecological processes of organic carbon should be coupled with vegetation restoration.     

广东番禺红树林造林研究

结合广东番禺红树林造林的现状,对影响红树林幼苗成活率和生长状况的因素进行初步分析,并据此提出提高造林保存率的措施等。影响红树林造林成活及生长的因素为：①水深：潮水越深,红树幼苗成活率越低,生长越差;②风浪：海面风浪越大,红树幼苗受干扰越大,成活和生长越差;③人为活动干扰为严重影响红树幼苗的成活和生长;④造林地的杂草会影响某些红树植物幼苗的光照条件;⑤海滩垃圾废物会挂断和压倒大量红树幼苗;⑥海滩石油污染会阻止红树胚轴的萌发;⑦幼苗种植时越粗壮,种植得越精细,则种植后生长越好。并提出提高造林成效的措施：①加强维护和管理：包括护理受损伤的红树幼苗,清除塑料袋等垃圾物,罅在红树幼苗区的捕捞活动,造林前清除杂草和固定某些红树植物幼苗;②补植受破坏的红树幼苗和扩大种植。     

Modelling mangrove propagule dispersal trajectories using high‐resolution estimates of ocean surface winds and currents

Mangrove forests are systems that provide ecosystem services and rely on floating propagules of which the dispersal trajectories are determined by ocean currents and winds. Quantitating connectivity of mangrove patches is an important conservation concern. Current estimates of connectivity, however, fail to integrate the link between ocean currents at different spatial scales and dispersal trajectories. Here, we use high‐resolution estimates of ocean currents and surface winds from meteorological and oceanographic analyses, in conjunction with experimental data on propagule traits (e.g., density, size, and shape) and dispersal vector properties (e.g., strength and direction of water and wind currents). We incorporate these data in a dispersal model to illustrate the potential effect of wind on dispersal trajectories of hydrochorous propagules from different mangrove species. We focus on the Western Indian Ocean, including the Mozambique Channel, which has received much attention because of its reported oceanic complexity, to illustrate the effect of oceanic features such as eddy currents and tides. In spite of the complex pattern of ocean surface currents and winds, some propagules are able to cross the Mozambique Channel. Eddy currents and tides may delay arrival at a suitable site. Experimentally demonstrated differences in wind sensitivity among propagule types were shown to affect the probability of departure and the shape of dispersal trajectories. The model could be used to reconstruct current fluxes of mangrove propagules that may help explain past and current distributions of mangrove forests and assess the potential for natural expansion of these forests.     

重金属污染对珠江口红树林表层沉积物碳含量的影响

湿地沉积物是红树林生态系统中重要的组成部分,其总有机碳储量的变化对红树林生态系统的固碳能力有着重要影响。现有对红树林湿地重金属的研究多集中于污染评价,鲜有涉及重金属含量对沉积物总有机碳（TOC）含量影响的研究。于2018-2019年期间4次前往珠江口典型红树林湿地,采集了0-30 cm表层土壤沉积物的样品,并测定其重金属含量和TOC含量,以探讨重金属含量变化对TOC的影响。结果表明,与广东地区的背景值相比,研究区沉积物重金属含量超标较为严重,重金属来源应是人类活动;沉积物的重金属含量能够显著影响TOC含量（P<0.01,R²=0.39）,间接对红树林湿地的固碳能力、甚至全球变暖产生一定影响;Cd、As、Zn含量高的沉积物环境有利于TOC的积累,Cu、Cr、Ni、Hg含量低的沉积物环境则不利于TOC的积累。沉积物的重金属对TOC的影响的机制是非常复杂的,它们可以通过影响土壤结构、土壤化学组分、土壤内微生物、上部植被群落的生长以及凋落物归还等一系列过程,导致沉积物TOC和固碳能力的变化。     

A review on the present status and management of mangrove wetland habitat resources in Bangladesh with emphasis on mangrove fisheries and aquaculture

The mangrove forest of Bangladesh, the largest continuous mangrove bulk, is one of the most important features of the coastal area of the country. The existence of the mangrove has increased the values of other coastal and marine resources such as the coastal and marine fisheries by increasing productivity and supporting a wide biological diversity. The deltaic mangrove of Bangladesh is ecologically different from the other, mostly nondeltaic mangroves of the world and is unique also in its floral and faunal assemblage; therefore, a number of endangered plants and animals that are extinct from other parts of the world, are existing in Bangladesh mangrove. However, the mangrove has been under intensive pressure of exploitation for the last few decades which, in addition to direct clearance and conversion have placed the mangrove under extreme threat. Shrimp farming is the most destructive form of resource use the mangrove has been converted to, which contributed significantly to mangrove destruction with a corresponding loss of biological resources. Concerns have been raised among the ecologists, biologists, managers and policy makers since the early 1990s; deliberate destruction of mangrove and unplanned development of coastal aquaculture particularly shrimp aquaculture have been put under extreme criticism and the sustainability has been questioned. The present status of the mangrove resources including mangrove fisheries and aquaculture and management practices have been reviewed in this paper; impacts of different forms of human interventions and resource use have also been discussed. It is suggested that the management options and the policy aspects should be critically reviewed and amended accordingly; beneficiaries and stakeholders at all levels of resource exploitation must take part and contribute to conservation and management. An immediate need for mangrove conservation has been identified.     

Mangrove leaf litter decomposition under mangrove forest stands with different levels of pollution in the Niger River Delta,Nigeria

Nutrient cycling often moves between litter fall and decomposition. It is hypothesized that hydrocarbon pollution will slow down mangrove litter decomposition because of the reduction in microbial activities. We studied decomposition rates at different levels of pollution (i.e. high and low) and amongst different mangrove species (i.e. red, white and black). For the first experiment, fresh leaves of Rhizophora racemosa were collected, sealed in a litter bag and placed on the mangrove floor for 1.24 years at which all the leaves had completely decomposed to humus and were oven‐dried and weighed to calculate the decomposition rate constant (k) of mass loss. Although there was no significant difference in the rate of decomposition (P > 0.05), leaves at the highly polluted plot had lower rate of decomposition (6.58 × 10^?4) when compared to leaves at the lowly polluted plot (1.75 × 10^?3). In the second experiment, there was a significant difference in decomposition rates amongst species (P < 0.05). Red mangrove leaves (0.41) decomposed more than white (0.28) and black (0.28) mangrove leaves. This implies that hydrocarbon pollution slowed, but did not stop the decomposition of mangrove leaves.     

溢油事故中渔业资源损失的数值模拟评估模式

海洋溢油污染不仅关系到天然渔业资源、海鸟等生物、海域环境、海岸线生态的破坏,而且对渔业、捕捞业、旅游业都会造成巨大损失,甚至会直接或间接地危害人类的健康。短期来看,一方面石油、燃料油等进入海洋后,对海洋生物资源造成影响;另一方面会危害附近海区的海洋环境,侵害海洋生物以及海鸟赖以生存和栖息的环境。长期来看,持续的海洋污染会导致的生态环境失衡,海洋的生产力也随之下降。溢油事故中的渔业资源损失评估作为追究污染事故责任,尽快恢复海域资源与环境的重要一环需要不断改进创新。为了定量确定海洋溢油事故发生后渔业资源的损失程度,将传统的评估模式与现代科学技术相结合,通过海洋动力学、流体力学、海洋生物学、环境化学等多个学科交叉融合,将流场风场模型、溢油模型、海域调查监测、卫星遥感技术、毒性效应和渔业资源的损失评估方法相结合,形成一种渔业资源损失评估的数值模拟评估模式,以完善溢油事故中渔业资源损失评估体系。在溢油事故现场监测数据的基础上,运用数学计算理论选择相对应的溢油模型,结合具体溢油事故案例的潮流数据和风场数据,模拟海上溢油污染的时空分布情况。采用卫星遥感技术根据不同油品在海水中不同的亮度表现,处理得到溢油油膜信息,与模拟得到的油膜信息进行比对验证,并对模型进行修正,通过模拟得出污染海域油浓度分布与溢油污染范围信息,结合溢油污染对不同海洋生物的毒性效应,得到渔业资源的损失程度,为溢油事故的渔业资源损失评估提供一种思路,为溢油事故发生后的损失评估和事故处理起到一定的参考辅助作用。