表观遗传修饰在结核病发生发展中的作用

表观遗传学作为生命科学领域的研究热点之一,已有大量的研究证实表观遗传机制在肿瘤、自身免疫疾病等疾病中起着关键作用.表观遗传修饰在结核病中的研究刚刚起步,但已发现表观遗传修饰在结核分枝杆菌、宿主,以及结核分枝杆菌与宿主相互作用中均起着重要作用.表观遗传修饰能通过调控结核分枝杆菌基因表达或调控宿主表观基因组转录和免疫应答来影响结核分枝杆菌的生长和复制,进而影响结核病发生发展和转归.本文将对表观遗传修饰在结核分枝杆菌生长复制以及结核病发生发展中的作用进行综述,为寻找新的药物靶点、研发新型治疗策略提供科学依据.     

生长环境对结核分枝杆菌胁迫作用的研究进展

高传染性结核病是由结核分枝杆菌引起的慢性消耗性疾病,病死率较高,备受全球关注。结核分枝杆菌是一种胞内寄生菌,通过呼吸道感染宿主,感染期间寄居肺部形成肉芽肿。肉芽肿或者免疫系统施加的环境压力,比如低pH、缺乏营养(缺铁)、缺氧等使结核分枝杆菌进入休眠状态,从而影响结核分枝杆菌的正常生长和抗生素的疗效。结核病治疗周期长,易产生耐药性,因此迫切需要研发新的药物以提升治疗效果。本文通过3个主要具有胁迫作用的生长环境因素综述了近年来发现的结核分枝杆菌相关调控因子和药物新靶点,为疫苗研究及新药物设计提供理论基础和研究依据。     

结核分枝杆菌感染实验模型

结核分枝杆菌是引起人结核病的主要病原,全世界约有1/3人口感染结核分枝杆菌。尽管该病原可感染并引起许多动物疾病,但人类是其中心宿主。为研究结核分枝杆菌的致病机理及宿主对本病原的保护性和免疫病理学反应,选择合适的动物模型非常必要。本文阐述了结核病研究中常用的实验模型及各种模型的优缺点。实验模型的合理应用将促进我们对结核病的认识,从中获取的资料将有助于我们发现更好的预防和治疗方案。     

斑马鱼-海分枝杆菌模型研究对结核病致病机理的启示

全世界约三分之一的人口感染过结核分枝杆菌,其导致的结核病仍然是全球公共卫生的严重威胁。结核菌是典型的胞内致病菌。结核菌的致病性与其成功逃避和利用宿主免疫应答等密切相关。控制结核病需要深入了解致病菌和宿主之间的相互作用。不同的动物模型是揭示致病菌-宿主相互作用的关键。海分枝杆菌-斑马鱼模型是最近才得以发展并获得了不少新见解的研究系统之一。本文总结了该模型揭示的海分枝杆菌毒力因子Erp、Esx-1、pmiA、Mel1和Mel2、KasB等,以及该模型的优缺点。这些结果为大动物模型研究和深入了解结核分枝杆菌感染人体的致病机理提供了线索。     

结核分枝杆菌持续感染相关基因及其调控网络分析

结核分枝杆菌是结核病的致病菌, 也是迄今最成功的人类致病菌之一. 结核分枝杆菌能逃避宿主免疫攻击, 在人体内持续感染或呈休眠状态. 当人体免疫功能低下时, 持续感染或休眠的致病菌可能被重新激活. 结核分枝杆菌的持续感染是制约结核病控制计划成功的主要障碍之一. 揭示结核分枝杆菌持续感染的分子机制、寻找其中薄弱环节、发现适当的药物靶标并开发全新药物及免疫干预措施, 被认为是遏制结核病蔓延的关键. 结核分枝杆菌持续感染和再激活是众多基因协同的系统适应过程. 本文在全面分析全球结核分枝杆菌持续感染相关基因研究文献的基础上, 通过文本挖掘, 综合本实验室前期研究结果, 提出了结核分枝杆菌持续感染相关基因的调控网络, 为揭示结核分枝杆菌持续感染的机制, 筛选控制结核病的新靶标和免疫干预节点提供研究基础.     

分枝杆菌T7SS(ESX)分泌系统功能研究进展

分枝杆菌感染宿主后能够通过分泌至胞外的效应蛋白去影响宿主的免疫功能,其中ESX(或Ⅶ型)系统在效应蛋白分泌方面发挥了重要作用。ESX分泌系统是分枝杆菌和许多放线菌中的蛋白质输出系统,但目前ESX系统如何将底物运输穿过外膜的分子机制以及调控机制尚不清楚。本文对ESX系统的组成、功能、分类以及将底物运输至周质空间的相关研究进展展开了综述,并探讨了ESX系统在抗生素耐药、持留及与宿主-噬菌体相互作用中的功能,以及作为新药物靶标的潜力,以期为结核病新药物和疫苗抗原的发现提供新的见解。     

中性粒细胞在抗结核免疫中的作用

结核病是世界范围内的重要传染性疾病之一,严重威胁人类健康。免疫细胞在抗结核免疫过程中起重要作用,各细胞亚群通过不同作用机制影响结核病的病程及转归。中性粒细胞为机体应对结核分枝杆菌感染的第一道防线,在宿主免疫应答过程中是一把双刃剑。一方面,机体感染结核分枝杆菌后,中性粒细胞于第一时间向感染部位聚集,通过多种方式对抗感染：中性粒细胞吞噬结核分枝杆菌后,通过自身凋亡而杀菌;参与形成肉芽肿,形成胞外陷阱来限制结核分枝杆菌的生长和传播;产生功能性细胞因子,调控宿主的抗结核免疫反应。另一方面,中性粒细胞还参与机体的病理损伤过程,甚至促进体内结核分枝杆菌的生长。本文综述了中性粒细胞在抗结核免疫中作用的最新研究进展。     

结核分枝杆菌毒素-抗毒素系统与生物膜

结核分枝杆菌(Mycobacterium tuberculosis)是引起结核病的病原菌。其处于持续生存的休眠状态时,可导致长期无症状感染,称为结核潜伏感染。研究显示,结核分枝杆菌染色体中存在大量 “毒素-抗毒素系统”(toxin-antitoxin system,TAS),某些TAS在潜伏感染中发挥作用,可调节细菌生长和诱导细菌进入休眠状态;某些TAS参与生物膜形成和应激反应,但其影响生物膜形成的机制尚未阐明。生物膜中的结核分枝杆菌对多种抗结核药物耐药,且能抵抗宿主免疫系统防御;休眠状态的结核分枝杆菌对抗结核药物通常也是耐受的,给结核病治疗带来了巨大挑战。本文就近年来结核分枝杆菌TAS与生物膜的研究及抗结核药物对生物膜形成的影响进行综述。     

结核分枝杆菌生物被膜基质及潜在的药物靶点和治疗策略

持留性是结核分枝杆菌产生耐药和复发的重要原因之一.分枝杆菌的持留性与生物被膜的形成密切相关,对生物被膜的研究将有助于新型抗结核药物的开发.细胞外多糖、蛋白、DNA和脂质是结核分枝杆菌生物被膜细胞外基质的重要组成成分.本文阐述了结核分枝杆菌生物被膜基质的组成成分及基于这些成分潜在的药物靶点和治疗策略,希望为结核分枝杆菌生物被膜基质的生物学功能的研究带来新的思考.     

结核分枝杆菌诱导IFN-β产生在免疫调控中的作用

结核分枝杆菌是导致结核病的病原体,也是影响全球数百万人健康的病原体之一。机体中多种模式识别受体(pattern recognition receptor,PRR)可识别入侵的结核分枝杆菌,如DNA和RNA传感器,从而激活天然免疫系统并诱导干扰素-β(interferon-β, IFN-β)产生。虽然IFN-β是先天抗病毒应答的主要效应因子,但其在结核分枝杆菌感染中的作用仍具有争议。结核分枝杆菌感染诱导的IFN-β产生可以促进细菌生长,并增强细菌在宿主中的存活率,但用IFN-β处理细胞后再感染结核分枝杆菌,则可增强抗菌作用,保护宿主。因此,本综述将重点关注可识别结核分枝杆菌并诱导的IFN-β产生的PRR及其下游信号通路,并着重探讨IFN-β在介导结核分枝杆菌调控免疫功能中的作用,尤其是IFN-β与IL-1β之间的相互抑制性调节,旨在为进一步揭示结核分枝杆菌致病机制及结核病治疗药物研发提供新思路。     

The Mycobacterium tuberculosis mysB gene product is a functional equivalent of the Escherichia coli sigma factor, KatF

Mycobacterium tuberculosis, the causative agent of tuberculosis, may remain dormant within its host for many years. The nature of this dormant or latent state is not known, but it may be a specialized form of the stationary growth phase. In Escherichia coli, KatF (or RpoS) is the major stationary phase sigma factor regulating an array of genes expressed in this phase of growth. A potential M. tuberculosis katF homologue was cloned using a fragment of the E. coli katF gene as a probe. DNA sequence analysis of a resultant clone showed 100% identity to a fragment of DNA encoding the M. tuberculosis mysA and mysB genes. Overexpression of mysB in M. bovis BCG resulted in an increase in katG mRNA and catalase and peroxidase activity, and an increase in sensitivity of the cells to isoniazid. An increase in katG promoter activity from a reporter vector was demonstrated when mysB was overexpressed from the same plasmid, indicating a direct relationship between MysB and katG expression.     

Mycobacterial persistence: adaptation to a changing environment

Mycobacterium tuberculosis is a bacterial pathogen that can persist within an infected individual for extended periods of time without causing overt, clinical disease, in a state normally referred to as latent or chronic tuberculosis. Although the replicative state of the bacterium during this period is a matter of some conjecture, recent developments have indicated that the bacterium requires the regulated expression of a set of genes and metabolic pathways to maintain a persistent infection in an immunocompetent host. The characterization of these gene products and their role in bacterial metabolism and physiology is starting to provide insights into the mechanisms that M. tuberculosis has evolved to adopt its highly successful mode of pathogenicity.     

Chemokines and tuberculosis

Mycobacterium tuberculosis is a respiratory pathogen responsible for tuberculosis. A primary pathologic feature of M. tuberculosis infection is the formation of a granuloma. Immune cells migrate to the lung and then through the lung to the site of infection to form a granuloma. This structure contains the infection, and is often maintained for a long period of time. The signals responsible for granuloma formation and maintenance are largely unknown. Since chemokines and chemokine receptors direct cells to specific sites within the tissues, it is plausible that these cells participate in granuloma formation. In this review, the current literature on chemokines and M. tuberculosis infection, as well as the specific role that tumor necrosis factor alpha (TNF-) plays in granuloma formation and chemokine expression are discussed.     

Mass-spectrometry based minisequencing method for the rapid detection of drug resistance in Mycobacterium tuberculosis

A MALDI TOF MS based minisequencing method has been developed and applied for the analysis of rifampin (RIF)- and isoniazid (INH)-resistant M. tuberculosis strains. Eight genetic markers of RIF resistance-nucleotide polymorphisms located in RRDR of rpoB gene, and three of INH resistance including codon 315 of katG gene and − 8 and − 15 positions of the promoter region of fabG1-inhA operon were worked out. Based on the analysis of 100 M. tuberculosis strains collected from the Moscow region in 1997–2005 we deduced that 91% of RIF-resistant and 94% of INH-resistant strains can be identified using the technique suggested. The approach is rapid, reliable and allows to reveal the drug resistance of M. tuberculosis strains within 12 h after sample isolation.     

Structural diversity in the six-fold redundant set of acyl-CoA carboxyltransferases in Mycobacterium tuberculosis

Mycobacterium tuberculosis contains multiple versions of the accA and accD genes that encode the - and β-subunits of at least three distinct multi-functional acyl-CoA carboxylase complexes. Because of its proposed involvement in pathogenic M. tuberculosis survival, the high-resolution crystal structure of the β-subunit gene accD5 product has been determined and reveals a hexameric 356 kDa complex. Analysis of the active site properties of AccD5 and homology models of the other five M. tuberculosis AccD homologues reveals unexpected differences in their surface composition, providing a molecular rational key for a sorting mechanism governing correct acyl-CoA carboxylase holo complex assembly in M. tuberculosis.     

Activity of 7-methyljuglone in combination with antituberculous drugs against Mycobacterium tuberculosis

The recent increase in the incidence of tuberculosis with the emergence of multidrug-resistant (MDR) cases has lead to the search for new drugs that are effective against MDR strains of Mycobacterium tuberculosis and can augment the potential of existing drugs against tuberculosis. In the present study, we investigated the activities of a naphthoquinone, 7-methyljuglone, isolated from the roots of Euclea natalensis alone and in combination with other antituberculous drugs against extracellular and intracellular M. tuberculosis. Combinations of 7-methyljuglone with isoniazid or rifampicin resulted in a four to six-fold reduction in the minimum inhibitory concentration of each compound. Fractional inhibitory concentration (FIC) indexes obtained were 0.2 and 0.5, respectively, for rifampicin and isoniazid, suggesting a synergistic interaction between 7-methyljuglone and these anti-TB drugs. The ability of 7-methyljuglone to enhance the activity of isoniazid and rifampicin against both extracellular and intracellular organisms suggests that 7-methyljuglone may serve as a promising compound for development as an anti-tuberculous agent.     

Kinetic and spectroscopic characterization of native and metal-substituted beta-lactamase from Aeromonas hydrophila AE036

Five new inteins were discovered in a survey of 39 mycobacterial strains that was undertaken to clarify the role of RecA inteins in mycobacteria. They are all inserted at the RecA-b site of the recA gene of Mycobacterium chitae, M. fallax, M. gastri, M. shimodei and M. thermoresistibile and belong to the MleRecA allelic family. Sequence analysis showed that although only M. tuberculosis harbours an intein at the RecA-a site the sequence of the RecA-b site is well conserved between species. Furthermore, the presence of inteins does not correlate with specific characteristics of the species such as pathogenicity or growth rate.     

超声波对铜绿微囊藻与蛋白核小球藻生理特征及竞争生长的影响

铜绿微囊藻是常见的水华蓝藻,常常在湖泊中与蛋白核小球藻共存或竞争生长。超声波可用于藻华即时治理,能够降低藻类生理活性,影响藻类生长,还可能改变藻类种间竞争关系。为了探究超声胁迫(35 kHz,0.035 W·cm^-3)对铜绿微囊藻与蛋白核小球藻的生理特征及种间竞争的影响,本研究设置纯藻组和1:1混合组(细胞浓度比)进行试验。结果表明: 铜绿微囊藻对超声胁迫更加敏感。超声处理600 s后,铜绿微囊藻的光合活性(F_v/F_m)和酯酶活性存在显著变化,纯藻组和混合组的F_v/F_m分别降低了51.8%和64.7%。而各组中蛋白核小球藻的光合活性变化较小。同时,铜绿微囊藻释放的荧光溶解性有机物(类色氨酸、类酪氨酸、类富里酸物质)含量多于蛋白核小球藻。两种藻的细胞浓度对超声波的响应也不同,蛋白核小球藻变化较小,而铜绿微囊藻的细胞浓度出现不同程度的下降。尤其是600 s超声处理大幅降低了混合组中铜绿微囊藻的细胞浓度(-42.6%),在超声胁迫解除后的8 d内蛋白核小球藻占优势,种间关系由铜绿微囊藻单边抑制蛋白核小球藻转变为两者互相抑制。在超声处理后,铜绿微囊藻的活性能够逐渐恢复,为了提高控藻效果的持久性,建议在一周后再次进行超声处理。     

Synthesis and in vitro anti-mycobacterial activity of 5-substituted pyrimidine nucleosides

Mycobacterium tuberculosis and Mycobacterium avium infections cause the two most important mycobacterioses, leading to increased mortality in patients with AIDS. Various 5-substituted 2′-deoxyuridines, uridines, 2′-O-methyluridine, 2′-ribofluoro-2′-deoxyuridines, 3′-substituted-2′,3′-dideoxy uridines, 2′,3′-dideoxyuridines, and 2′,3′-didehydro-2′,3′-dideoxyuridines were synthesized and evaluated for their in vitro inhibitory activity against M. bovis and M. avium. 5-(C-1 Substituted)-2′-deoxyuridine derivatives emerged as potent inhibitors of M. avium (MIC₉₀ = 1–5 μg/mL range). The nature of C-5 substituents in the 2′-deoxyuridine series appeared to be a determinant of anti-mycobacterial activity. This new class of inhibitors could serve as useful compounds for the design and study of new anti-tuberculosis agents.     

外来水生植物大聚藻的生态安全性初探

从外来水生植物大聚藻的耐寒性、再生能力和耐盐性等方面入手,研究比较了其与有害植物水花生对环境适应能力的差异。结果表明:大聚藻的越冬能力明显高于水花生;大聚藻断枝离体水培后复活快、发根与生长迅速,生长量与营养繁殖力也明显大于水花生;大聚藻具有很强的耐盐能力,其枝条在NaCl 盐浓度为0 g·L^-1～3 g·L^-1 的水体中能正常生长,4 g·L^-1～5 g·L^-1的浓度中可存活2～4 周。因此,大聚藻在自然生态环境中具有超强的生存能力和繁殖能力,存在一定的生态风险,对大聚藻的利用必须在有限范围内谨慎进行,应严格控制其群体在自然生态环境中的过量扩散与繁殖。