全基因组关联研究的深度分析策略

2005年至今,全基因组关联研究(Genome-wide association study,GWAS)发现了大量复杂疾病/性状相关变异。近来,科学家们关注的焦点又集中在了如何利用GWAS数据进行深入分析,期待发现更多复杂疾病/性状的易感基因。一些新的策略和方法已经被尝试应用到复杂疾病/性状GWAS的后续研究中,例如深入分析GWAS数据;鉴定新的复杂疾病/性状易感基因/位点;国际合作和Meta分析;易感区域精细定位及测序;多种疾病共同易感基因研究;以及基因型填补,基于通路的关联分析,基因-基因、基因-环境交互作用和上位研究等。这些策略和方法的应用弥补了经典GWAS的一些不足之处,进一步推动了人类对复杂疾病/性状遗传机制的认识。文章对上述研究的策略、方法以及所面临的问题和挑战进行了综述,为读者描绘了GWAS后期工作的一个简要框架。     

大蜡螟幼虫的体色遗传规律

对大蜡螟Galleria mellonella幼虫不同颜色品系的普通遗传学分析表明,大蜡螟幼虫的体色遗传是常染色体遗传且符合复等位基因遗传规律。深黄色基因（AA）对灰黑色基因(BB)和灰色基因(CC)为显性,深黄色基因(AA)对白黄色基因(DD)、灰黑色基因(BB)对白黄色基因(DD)和灰色基因(CC)、灰色基因(CC)对白黄色基因(DD)为不完全显性。基因型为AD、BD、CD的个体,其表现型均为黄色;基因型为AA、BC的个体,其表现型均为深黄色。     

多个典范选择性状的综合优化研究

利用综合优化方法,研究了在育种目标约束下,选择性状表现型向量与目标性状基因型向量的典范相关,提出了综合典范性状对的数学模型。综合典范性状对是Ｓ个间撞遗传系数较在的典范选择－目标性状对,在育种目标约束下间接遗传系数极大化的线性组合。综合典范选择性状,作为间接选择的指标,有较好地满足多目标育种的要求。     

汉族和藏族的皮肤反射系数分析

人类的肤色是在遗传和环境因素的共同作用下形成的。最近在人类复杂性状基因定位中,统计学和遗传学研究方法的发展,使得肤色相关基因有可能利用这些方法来甄别。而且,有了Photovolt ColorWalk色度计等便携的新式光谱反射系数测量工具,研究者可以方便准确地测量大量人群的皮肤反射系数作为遗传学研究用的人类表型性状。我们衣物Photovolt ColorWark测试了372人的一个汉族群体和274人的一个藏族群体的上臂内侧不受阳光照射的皮肤反射系数,以建立反射系数测量的基准数据。我们调查了年龄、性别、居住地纬度、种族等不同因素对皮肤反射系数的影响,也调查了皮肤反射系数的正态分布。在这些研究结果的基础上我们设计了皮肤反射系数遗传学研究的策略。     

作物数量性状基因研究进展

分子生物技术的发展对作物数量性状基因（QTL）研究提供了条件,不同的定位群体各有其特点,相继出现的QTL定位也逐步完善。大量的研究揭示了QTL的基本特征,剖析了重要农艺4性状的遗传基础,给作物遗传改良带来了新的策略,不断深入的研究已经完成了特定的QTL的精细定位和克隆。本从QTL的定位群体,定位方法,研究现状,精细定位与克隆,以及QTL利用等方面对作物数量性状基因的研究进行了综述。     

家养动物多样性研究要素和成就

家养动物多样性的研究多年来侧重于经济性状和生态多样性及品种多样性。近几年来在遗传多样性方面取得重大进展 ,在品种聚类、系统保种、遗传多样性与经济性状和生态多态性的相关研究都取得了重要结果 ,有的已经做到数量性状基因定位、转基因和克隆动物检测等。家养动物与其野生近缘种的基因分析和利用野生种血液的育种也取得一定的效果。利用多样性鉴别技术已确认许多地方品种为中国特有种 ,引起了国际广泛关注     

冠心病易感基因的筛选

作为一种多基因疾病 ,冠心病是由遗传和环境因素共同作用的结果 ,在许多国家是主要的死因之一。由于目前冠心病的发病机制尚不十分清楚 ,阻碍了其易感基因的定位分离研究。冠心病遗传因素的确定 ,显然将有助于其易感基因定位分离研究。迄今除发现了个别的相关基因外 ,绝大部分的遗传易感性相关基因尚未被发现 ,其研究仍然存在许多问题。为此 ,本文就其易感基因可能的研究策略和方法作一综述。这些方法同样也适用于诸如中风、外周血管阻塞、高血压、心力衰竭等心血管疾病以及其它多基因疾病     

水稻产量相关QTL研究现状

产量是最为复杂的数量性状,对它的遗传机理了解甚微。近15年来,许多学者利用随机分离群体定位了许多影响水稻产量及其组分的QTL,即以QTL定位的方法对产量潜力进行遗传剖析。试验证明上位性效应对产量及其组分性状遗传变异起着重要作用,但目前大多数QTL研究仍侧重于发掘和克隆单个主效QTL,然而对单一基因／QTL的深入了解还不足以诠释复杂性状遗传基础的全貌,还没有为育种家提供足够的可应用于分子标记辅助育种的遗传信息并用于提高水稻产量。笔者认为今后的数量性状研究尚需加强复杂性状QTL遗传网络的发掘,在改良水稻品种性状的同时发展并完善QTL研究。     

革螨染色体及同工酶的研究进展

<正> 革螨染色体的研究,对革螨的分类、生态、生殖、进化、性决定机理等研究,以及对害螨的遗传防治和益螨的遗传改良都有重要的现实意义。 同工酶是由基因决定的,故其研究是从基因产物认识基因的存在及表达,由生化表现型反映基因型,将宏观的遗传现象结合到微观的分子水平,联系基因、酶、性状与结构、功能、调控的关系,对分子遗传学和分子分类学具有极其重要的意义。     

同源四倍体水稻糯性基因的遗传分析

许多学者研究了二倍体水稻糯性胚乳的遗传。他们指出糯性胚乳是单基因隐性遗传的。二倍体杂种Wx。的自交后代有3种基因型,显隐性比例为3:1。同源四倍体糯稻在。二位点上有4个等位基因,它与非糯稻的杂种后代的基因型种类和表现型比例要比二倍体复杂得多。以双显性WxWxwxwx为例,它的自交后代有,种基因型,其显隐性比例将依染色体、染色单体随机分离和完全均衡分离分别表现为35：1, 20.8:1和19.3:1,而3显性Wxwxwx.wx和单显性Wxwxw二,x杂合体也会依3种分离方式而产生相应的表现型比例。虽然过去对同源四倍体水稻的形态学和细胞学有过一些研究,但同源四倍体水稻单基因遗传的报道尚未见过。为了探索同源四倍体水稻的性状遗传规律,我们先从质量性状人手,对糯性胚乳进行了初步研究,现将观察分析结果报道如下。     

Advantages and limitations of nonhuman primates as animal models in genetic research on complex diseases

Abstract: The genetic similarity between humans and nonhuman primates makes nonhuman primates uniquely suited as models for genetic research on complex physiological and behavioral phenotypes. By comparison with human subjects, nonhuman primates, like other animal models, have several advantages for these types of studies: 1) constant environmental conditions can be maintained over long periods of time, greatly increasing the power to detect genetic effects; 2) different environmental conditions can be imposed sequentially on individuals to characterize genotype-environment interactions; 3) complex pedigrees that are much more powerful for genetic analysis than typically available human pedigrees can be generated; 4) genetic hypotheses can be tested prospectively by selective matings; and 5) essential invasive and terminal experiments can be conducted. Limitations of genetic research with nonhuman primates include cost and availability. However, the ability to manipulate both genetic and environmental factors in captive primate populations indicates the promise of genetic research with these important animal models for illuminating complex disease processes. The utility of nonhuman primates for biomedical research on human health problems is illustrated by examples concerning the use of baboons in studies of osteoporosis, alcohol metabolism, and lipoproteins.     

Radiation hybrid maps of Medaka chromosomes LG 12, 17, and 22.

The Medaka is an excellent genetic system for studies of vertebrate development and disease and environmental and evolutionary biology studies. To facilitate the mapping of markers or the cloning of affected genes in Medaka mutants identified by forward-genetic screens, we have established a panel of whole-genome radiation hybrids (RHs) and RH maps for three Medaka chromosomes. RH mapping is useful, since markers to be mapped need not be polymorphic and one can establish the order of markers that are difficult to resolve by genetic mapping owing to low genetic recombination rates. RHs were generated by fusing the irradiated donor, OLF-136 Medaka cell line, with the host B78 mouse melanoma cells. Of 290 initial RH clones, we selected 93 on the basis of high retention of fragments of the Medaka genome to establish a panel that allows genotyping in the 96-well format. RH maps for linkage groups 12, 17, and 22 were generated using 159 markers. The average retention for the three chromosomes was 19% and the average break point frequency was approximately 33 kb/cR. We estimate the potential resolution of the RH panel to be approximately 186 kb, which is high enough for integrating RH data with bacterial artificial chromosome clones. Thus, this first RH panel will be a useful tool for mapping mutated genes in Medaka.     

Latitudinal and voltinism compensation shape thermal reaction norms for growth rate

Latitudinal variation in thermal reaction norms of key fitness traits may inform about the response of populations to climate warming, yet their adaptive nature and evolutionary potential are poorly known. We assessed the contribution of quantitative genetic, neutral genetic and environmental effects to thermal reaction norms of growth rate for populations of the damselfly Ischnura elegans. Among populations, reaction norms differed primarily in elevation, suggesting that time constraints associated with shorter growth seasons in univoltine, high-latitude as well as multivoltine, low-latitude populations selected for faster growth rates. Phenotypic divergence among populations is consistent with selection rather than drift as Q(ST) was greater than F(ST) in all cases. Q(ST) estimates increased with experimental temperature and were influenced by genotype by environment interactions. Substantial additive genetic variation for growth rate in all populations suggests that evolution of trait means in different environments is not constrained. Heritability of growth rates was higher at high temperature, driven by increased genetic rather than environmental variance. While environment-specific nonadditive effects also may contribute to heritability differences among temperatures, maternal effects did not play a significant role (where these could be accounted for). Genotype by environment interactions strongly influenced the adaptive potential of populations, and our results suggest the potential for microevolution of thermal reaction norms in each of the studied populations. In summary, the observed latitudinal pattern in growth rates is adaptive and results from a combination of latitudinal and voltinism compensation. Combined with the evolutionary potential of thermal reaction norms, this may affect populations' ability to respond to future climate warming.     

Genetic and environmental contributions to prosocial behaviour in 2- to 9-year-old South Korean twins

Although over 50 twin and adoption studies have been performed on the genetic architecture of antisocial behaviour, far fewer studies have investigated prosocial behaviour, and none have done so on a non-western population. The present study examined mothers' ratings of prosocial behaviour in 514 pairs of 2- to 9-year-old South Korean monozygotic and dizygotic twins. Correlational analyses showed a tendency of increasing genetic effects and decreasing shared environmental effects with age although shared family environment effects and the moderating effects of age did not attain statistical significance in model-fitting analyses. The best-fitting model indicated that 55% (95% CI: 45-64%) of the variance in the 2- to 9-year-olds' prosocial behaviour was due to genetic factors and 45% (95% CI: 36-55%) was due to non-shared environmental factors. It is concluded that genetic and environmental influences on prosocial behaviour in young South Koreans are mostly similar to those in western samples.     

植物景观遗传学研究进展

植物景观遗传学是新兴的景观遗传学交叉学科的一个重要研究方向。目前植物景观遗传学的研究虽落后于动物,但其在生物多样性保护方面具有的巨大潜力不可忽视。从景观特征对遗传结构、环境因素对适应性遗传变异影响两个方面,系统综述了近十年来国际上植物景观遗传学的研究焦点和研究进展,比较了植物景观遗传学与动物景观遗传学研究在研究设计和研究方法上的异同,并基于将来植物景观遗传学由对空间遗传结构的描述发展为对景观遗传效应的量化分析及预测的发展框架,具体针对目前景观特征与遗传结构研究设计的系统性差、遗传结构与景观格局在时间上的误配、适应性位点与环境变量的模糊匹配、中性遗传变异与适应性遗传变异研究的分隔、景观与遗传关系分析方法的局限等五个方面提出了研究对策。     

自然保护区生态旅游对野生动物的影响

目前中国的很多自然保护区开展了生态旅游,但这类活动对野生动物的影响研究却十分薄弱,因此十分有必要在介绍欧美、澳洲学者的研究进展基础上,针对我国的研究现状,提出该领域的研究方向、监测和管理策略.自然保护区的生态旅游活动主要有野生动物观赏、徒步行走、摄影、野外宿营、山地车或雪地车、电动或机动艇游湖、溪涧漂流、环境教育、社区访问等,旅游活动类型、范围、强度、时空分布等是影响对野生动物干扰大小的主要因素.生态旅游对野生动物的影响包括直接影响(个体的行为反应和生理指标改变、繁殖力降低、种群分布和物种组成的改变等)和间接影响(生境破坏、外来种散布和环境污染等).国外生态旅游对鸟类的影响研究较多,主要集中鸟类的惊飞反应、取食、能量消耗、繁殖等方面;对兽类影响的研究主要集中在行为、生理指标改变、种群数量等方面.我国未来的研究应注重收集基础性研究数据和深入探讨一些理论与应用问题,要运用多种技术手段对自然保护区野生动物的行为、生理、种群动态、物种多样性、生境质量、游客的时空分布、态度和行为等进行长期监测,而后将其结果应用到野生动物、生境以及游客的管理决策中去.另外,研究中应重视自然科学和社会科学的多学科交叉融合.     

基因多态性与慢性阻塞性肺疾病易感性关系研究的新进展

慢性阻塞性肺疾病(chronic obstructive pulmonary disease,COPD)是一组气流受限为特征的肺部疾病,气流受限不完全可逆,呈进行性发展。它受遗传因素,环境因素以及遗传-环境相互作用的影响。目前,虽然其确切的病因及发病机制不甚明了,但是近年来的研究表明COPD是一种多基因调控的疾病。本文综述了几个较为重要的遗传基因多态性与COPD易感性关系的近期研究进展。     

Post-genomic nematode parasitology

The future direction of post-genomic nematode parasitology should focus on the function of the genes that are defined by large-scale expressed sequence tag sequencing and on broader questions about the genetic basis of parasitism. Functional characterisation will require the application of high throughput technologies that have been developed in other fields, including genome mapping strategies and DNA microarray analysis. These will be greatly aided by the development and application of appropriate model organisms. It is crucial that the field make the transition from a narrow focus on one or a few genes at a time to a focus on whole genomes in order to fully realise the potential of the expressed sequence tag and other genomic projects currently under way.     

Schizophrenia Genetics

Schizophrenia is a complex multifactorial disease, in most cases manifested as a result of the interaction of genetic and psychological factors, as well as certain environmental conditions. However, genetic factors certainly play a determining role in the predisposition to schizophrenia. The coefficient of heritability of schizophrenia is about 80%, which is typical of the most highly inherited multifactorial diseases. This review presents the results of the latest world studies of genetic factors in the development of schizophrenia, including epigenetic, genome-wide association studies, and next generation sequencing.     

Use of autosomal loci for clustering individuals and populations of East Asian origin

We studied the genetic relationships among East Asian populations based on allele frequency differences to clarify the relative similarities of East Asian populations with a specific focus on the relationships among the Koreans, the Japanese, and the Chinese populations known to be genetically similar. The goal is to find markers appropriate for differentiating among the specific populations. In this study, no prior data existed for Koreans and the markers were selected to differentiate Chinese and Japanese. We typed, using AB TaqMan assays, single-nucleotide polymorphisms (SNPs) at 43 highly selected mostly independent diallelic sites, on 386 individuals from eight East Asian populations (Han Chinese from San Francisco, Han Chinese from Taiwan, Hakka, Koreans, Japanese, Ami, Atayal, and Cambodians) and one Siberian population (Yakut). We inferred group membership of individuals using a model-based clustering method implemented by the STRUCTURE program and population clustering by using computer programs DISTANCE, NEIGHBOR, LSSEARCH, and DRAWTREE, respectively, calculating genetic distances among populations, calculating neighbor-joining and least-squares trees, and drawing the calculated trees. On average 52% of individuals in the three Chinese groups were assigned into one cluster, and, respectively, 78 and 69% of Koreans and Japanese into a different cluster. Koreans differentiated from the Chinese groups and clustered with the Japanese in the principal component analysis (PCA) and in the best least-squares tree. The majority of Koreans were difficult to distinguish from the Japanese. This study shows that a relatively few highly selected markers can, within limits, differentiate between closely related populations.Electronic Supplementary Material Supplementary material is available for this article at