Spatial heterogeneity in the parasite communities of creek chub (Semotilus atromaculatus) in southeastern Nebraska

The intestinal helminth communities of creek chub (Semotilus atromaculatus) were studied in the streams of southeastern Nebraska to characterize spatial variation, to determine whether drainages act as regional species pools, and to examine the spatial patterning of individual parasite species within and among drainages. Creek chub were sampled in the summer of 2003 and the spring of 2004 at each of 12 sites distributed evenly among 3 drainages in the Big Nemaha River watershed. Four intestinal helminths were recovered: Allocreadium lobatum, Proteocephalus sp., Rhabdochona canadensis, and Paulisentis missouriensis. Host size had little or no effect on the composition of the parasite communities of creek chub, either among individual fish or among samples. In contrast, drainage and sample date explained 82% of the variation in mean infracommunity species richness among samples, and 62% of the variation in mean infracommunity abundance among samples. Drainage differences were determined by the distributions of P. missouriensis and R. canadensis; whereas, A. lobatum and Proteocephalus sp. were more uniformly distributed among drainages. Each drainage was characterized by a unique pattern of species diversity at infracommunity, component community, and drainage levels of organization.     

Parasites of juvenile brook trout (Salvelinus fontinalis) from Hunt Creek, Michigan

Four parasite species (Crepidostomum cooperi, Cystidicoloides ephemeridarum, Acanthocephalus dirus, Salmincola edwardsii) infected 215 juvenile brook trout (105 young-of-year; 110, 1-yr-old) from Hunt Creek, Michigan, in 2003, 2004, and 2005. Prevalences of these species in 2004 (main study year) varied from 29 to 37%. Crepidostomnum cooperi had the highest mean intensity and mean abundance, followed by C. ephemeridarum. The number of fish infected with each parasite species was significantly higher in 1-yr-old fish than in young-of-year fish. Also, the mean intensities and mean abundances of C. cooperi and C. ephemeridarum and the mean abundance of A. dirus were significantly higher in older fish. The mean intensity of C. cooperi and prevalence of A. dirus were significantly higher in fish between creek sections. Fish length had a significant positive effect on the abundances of C. cooperi and C. ephemeridarum; parasite species richness, on the abundances of A. dirus and S. edwardsii; and parasite species richness in the 2003 and 2004 trout cohorts, respectively. Crepidostomum cooperi, C. ephemeridarum, A. dirus, and S. edwardsii commonly infect Michigan brook trout. The small number of parasite species infecting Hunt Creek brook trout is similar to the number of parasite species of brook trout from other Michigan creeks.     

Parasites of fishes in the Colorado River and selected tributaries in Grand Canyon, Arizona

As part of the endangered humpback chub (HBC; Gila cypha ) Adaptive Management Program, a parasite survey was conducted from 28 June to 17 July 2006 in 8 tributaries and 7 adjacent sections of the main stem of the Colorado River, U.S.A. In total, 717 fish were caught, including 24 HBC. Field necropsies yielded 19 parasite species, 5 of which (Achtheres sp., Kathlaniidae gen. sp., Caryophyllaidae gen. sp., Myxidium sp., and Octomacrum sp.) are new records for Grand Canyon, Arizona, U.S.A. Spearman's correlation coefficient analyses showed no correlations between parasite burden and fork length for various combinations of fish and parasite species. Regression analyses suggest that no parasite species had a strong effect on fish length. The most diverse parasite community (n = 14) was at river kilometer (Rkm) 230, near the confluence of Kanab Creek. The most diverse parasite infracommunity (n = 12) was found in the non-native channel catfish (CCF; Ictaluris punctatus). Overall parasite prevalence was highest in CCF (85%) followed by that in HBC (58%). The parasite fauna of humpback chub was mainly composed of Bothriocephalus acheilognathi and Ornithodiplostomum sp. metacercariae.     

拉萨河流域大型底栖动物群落结构及其与环境因子的关系

2017年8月对拉萨河流域23个采样点的底栖动物群落和环境因子特征进行了调查,采集到大型底栖动物41属(种),其中水生昆虫35属(种),占85.4%;软体动物2属(种),占4.9%;环节动物3属(种),占7.3%;线形动物1属(种),占2.4%。各点位平均物种数为8种,优势种组成差别较大,优势种主要有四节蜉属(Baetis spp.)、大蚊属(Tipula sp.)、纹石蛾属(Hydopsychesp.)、短石蛾属(Brachycentrus sp.)、水丝蚓属(Limnodrilus sp.)、摇蚊属(Chironomus sp.)等,各采样点底栖动物平均密度为362只/m2。运用生物多样性指数分析底栖动物的群落结构,Marglef丰富度指数、香农威纳指数和均匀度指数平均值分别为1.18、1.32和0.49,生物多样性指数水平较低。采用均匀度指数法和底栖动物BI指数法进行了水质评价,两种评价结果显示分别有30.3%和56.5%的采样点水质为中污染至重污染状态。典范对应分析结果表明:影响拉萨河流域底栖动物群落的主要环境因子是海拔、化学需氧量、硫化物、p H值、总磷和总氮。     

Comparative influence of spatial scale on beta diversity within regional assemblages of birds and butterflies

Aim We examined whether variation in species composition of breeding birds and resident butterflies in the Great Basin of North America depended on sampling grain (the smallest resolvable unit of study) and on the relative proximity of sampling units across the landscape. We also compared patterns between the two taxonomic groups with reference to their life‐history characteristics. Location Data for our analyses were collected from 1996 to 2003 in three adjacent mountain ranges in the central Great Basin (Lander and Nye counties, Nevada, USA): the Shoshone Mountains, Toiyabe Range and Toquima Range. Methods Data on species composition for both taxonomic groups were collecting using standard inventory methods for birds and butterflies in temperate regions. Data were compiled at three sampling grains, sites (average 12 ha), canyons (average 74 ha) and mountain ranges. For each sampling grain in turn, we calculated similarity of species composition using the Jaccard index. First, we investigated whether mean similarity of species composition among the three ranges differed as a function of the grain size at which data were compiled. Secondly, we explored whether mean similarity of species composition was greater for canyons within the same mountain range than for canyons within different mountain ranges. Thirdly, we examined whether mean similarity of species composition at the site level was different for sites within the same canyon, sites within different canyons in the same mountain range, and sites within canyons in different mountain ranges. We used a Bayesian model to analyse these comparisons. Results For both taxonomic groups, mean similarity of species composition increased as the sampling grain increased. The effect of spatial grain was somewhat greater for birds than for butterflies, especially when the intermediate sampling grain was compared with the smallest sampling grain. Similarity of species composition of butterflies at each sampling grain was greater than similarity of species composition of birds at the same grain. Mean similarity of species composition of both birds and butterflies at the canyon level and site level was affected by relative proximity of sampling locations; beta diversity increased as the relative isolation of sampling locations increased. Main conclusions The sensitivity of beta diversity to sampling grain likely reflects the effect of local environmental heterogeneity: as sampling grain increases, biotic assemblages appear more homogeneous. Although breeding birds in our study system have larger home ranges than resident butterflies, birds may have more specialized resource requirements related to vegetation structure and composition, especially at small sampling scales. The degree of variation in species composition of both taxonomic groups suggests that spatially extensive sampling will be more effective for drawing inferences about regional patterns of species diversity than intensive sampling at relatively few, smaller sites.     

Allopodocotyle chiliticorum n. sp. (Digenea: Opecoelidae) from redlip shiners, Notropis chiliticus, in Basin Creek, North Carolina

Allopodocotyle chiliticorum n. sp. is described from the intestines of redlip shiners (Notropis chiliticus) from Basin Creek, North Carolina. The new species is characterized by circumcecal vitelline fields that are not confluent in the post-testicular space, which distinguishes it from the 3 previously known species of this genus described from freshwater fishes. The new species is characterized further by an elongate vitelline reservoir lying dorsal to the ovary, an ovary as large or larger than the testes, and an excretory vesicle not reaching the posterior testis. A. chiliticorum n. sp. most closely resembles Allopodocotyle lepomis (Dobrovolny, 1939) in body shape, testes shape, and terminal genitalia but is distinguished further from this species by the extent of the intestinal ceca. The new species is the fourth species of Allopodocotyle known from freshwater fishes in North America.     

Infection by a black spot-causing species of Uvulifer and associated opercular alterations in fishes from a high-desert stream in Wyoming

Black spot is a common disease syndrome of freshwater fishes. This study provides information on the rank of density of the black spot agent and opercular bone alterations associated with at least one digenean, Uvulifer sp., infecting native and non-native catostomids and cyprinids of the Upper Colorado River Basin. We evaluated the density rank of pigmented metacercariae and associated alterations in the operculum of the bluehead sucker Catostomus discobolus, flannelmouth sucker C. latipinnis, white sucker C. commersoni, catostomid hybrids, roundtail chub Gila robusta, and creek chub Semotilus atromaculatus, sampled from Muddy Creek, Wyoming, USA in 2003 or 2004. All fish species contained individuals that exhibited gross signs of the black spot agent. Bluehead and flannelmouth suckers had 100% prevalence of infection. Although the other suckers and chubs contained encysted metacercariae in at least one individual, the presence of pigmented metacercariae was not apparent (i.e. based on gross observations) in many individuals. Catostomids had higher densities of metacercariae than cyprinids, as shown by frequency distributions of density ranks. Opercular holes (i.e. holes that completely penetrated the opercle and were in direct association with the pigment associated metacercariae) and pockets (depressions on the external surface of the opercle associated with metacercariae) were abundant among catostomids but rare among cyprinids.     

Actinobacterial community and diversity in rhizosphere soils of Aquilaria crassna Pierre ex Lec assessed by RT-PCR and PCR-DGGE

The actinobacterial community in rhizospheres of eaglewood (Aquilaria crassna Pierre ex Lec) was analyzed using culture-independent methods of RT-PCR and PCR DGGE of 16S rRNA gene. We conducted the experiments to investigate the difference in diversity and community structure of actinobacteria with respect to sampling sites and seasons and to determine effect of plant species on selection of rhizosphere community from different sampling sites. Total genomic DNA and RNA were extracted from rhizosphere soils collected from two plantations in Phetchabun province and one plantation in each Nakhonnayok province, Rayong province and Chiang Mai province of Thailand during dry and rainy seasons. The UPGMA dendrogram generated from DGGE fingerprints showed that the actinobacterial community was separated corresponding to sampling sites, suggesting sampling sites effect. The shift in community and diversity between two seasons was detected in all sampling sites. RNA-based analyses showed that several actinobacterial groups appeared to be ubiquitous but different in metabolic activity in different environments. Species diversity (S) and simple indexes (I) indicate the increase in species diversity of actinobacteria from all sampling sites in rainy season. Cloning and sequencing of 16S rRNA gene fragments obtained from DGGE bands revealed that 14 of 40 dominant species of actinobacteria in the rhizospheres of this plant belonged to uncultured actinobacteria. Besides the uncultured actinobacteria, Nocardioides sp., Streptomyces sp., Mycobacterium sp., Rhodococcus sp. and Actinoplanes sp. were indentified and frequently found more than other genera.     

Monogenean parasites of introduced pumpkinseed Lepomis gibbosus (Centrarchidae) in the Danube River Basin

The pumpkinseed, Lepomis gibbosus, a centrarchid fish native to eastern North America, was introduced into Europe at the end of the 19th century. Lepomis gibbosus now represents one of the most successful of introduced fish species, having spread widely throughout many European countries. In this study, we collected monogenean parasites of L. gibbosus from four sites in the Danube River Basin. We recorded four monogenean species: Gyrodactylus sp., probably acquired in the area of introduction, and Onchocleidus similis, O. dispar and Actinocleidus recurvatus, species introduced together with their host. Onchocleidus similis dominated the parasite community at all sampling sites. Actinocleidus recurvatus has only been reported from southern Europe to date and, therefore, this is the first report of A. recurvatus from Central Europe and the Danube River Basin. We observed high morphological variability in both anchor pairs of A. recurvatus. Only in O. similis was there a positive correlation observed between haptor metric traits and fish host length. Differences in metric traits between native and introduced O. similis populations may reflect a difference in fish host size, the introduced fish host achieving a smaller size than fish from native populations. A detailed analysis of microhabitat distribution indicated a preference for the second gill arch for both dominant species O. similis and A. recurvatus, with dissimilar site segregation.     

Halfway up the trophic chain: development of parasite communities in the sparid fish Boops boops

We examined the patterns of composition and structure of parasite communities in the Mediterranean sparid fish Boops boops along a gradient of fish sizes, using a large sample from a single population. We tested the hypothesis that species forming the core of the bogue parasite fauna (i.e. species which have a wide geographical range and are responsible for recognizable community structure) appear early in the fish ontogeny. The sequential community development observed supported the prediction that core species appear in the fish population earlier than rare and stochastic species. There was also a strong correlation between the order of 'arrival' of the species and their overall prevalence. Six key species were responsible for recognizable community structure across size/age cohorts; the addition to this baseline community of key parasite species resulted in a nested structure that is linked to differential species abundance rather than fish size. Information on the life-cycles, distribution and host range of the parasites is used to explain the observed patterns of parasite community structure. We conclude that the small mouth size of B. boops coupled with suction feeding may provide a setting for passive sampling as a mechanism leading to non-random parasite community structure.     

Patterns of infracommunity species richness in eels, Anguilla anguilla

Between October 1999 and October 2001, a total of 510 European eels Anguilla anguilla were captured in 13 different samples from the rivers Thames (five locations) and Test (one location) in southern England. The relationship between parasite component community species richness (CCR) and maximum infracommunity species richness (ICRmax) compared with that previously observed in bird and mammal hosts. Specifically, the maximum number of parasite species occurring in infracommunities equalled or exceeded half the number of parasite species in the component community at that time, across a wide range of CCR values (2-9 parasite species). Furthermore, the frequency distribution of infracommunity richness (ICR) suggested that the species composition of infracommunities is probably random. These findings suggest that intestinal macroparasite infracommunities in eels are unsaturated and potentially species rich assemblages and, in these respects, share a fundamental similarity with the infracommunities of birds and mammals.     

The biogeography of parasitism in sticklebacks: distance,habitat differences and the similarity in parasite occurrence and abundance

Similarity in parasite community composition often decreases with both increasing geographic distance and environmental dissimilarity between localities, though it is unknown whether similarity in local abundance of selected parasite species follows similar rules. We tested this using data on metazoan parasites in 126 stickleback (Gasterosteus aculeatus) populations, with locations from Eurasia, eastern North America, and western North America treated separately. Similarity values were regressed against pairwise distances between localities; after correcting for distance, the effect of environmental dissimilarity was assessed by splitting similarity values into those between pairs of localities with either similar, moderately different or very different salinity (freshwater, marine or brackish). For selected parasite species, pairwise similarity in abundance (mean no. parasites per host) were computed across all localities, and treated as above. Similarity in parasite community composition decreased with increasing distance between localities in all three geographic regions. A significant effect of environmental difference was found in all regions: for a given distance between two sites, their parasite communities were more similar if they were of the same salinity. Slopes for distance decay in similarity were consistently higher for eastern North America than for Eurasia. Among the 12 parasite species for which sufficient data were available, only 4 showed the expected relationship, i.e. the greater the geographical separation between host populations, the greater the difference in parasite abundance; also, significant effects of environmental differences in salinity were only found for 3 of these species. Our findings show that parasite communities of sticklebacks are structured by geographical distance and local salinity conditions. The results indicate that strong effects at the community level do not translate into corresponding effects at the population level, suggesting that parasite dispersal and population dynamics are controlled by different processes.     

Host specificity and the distribution-abundance relationship in a community of parasites infecting fishes in streams of North Carolina

A positive relationship between distribution and local abundance is often observed among species in a community. The resource-breadth hypothesis suggests that this pattern is the result of differential abilities among species to utilize available resources, such that generalists are widely distributed and locally abundant, and specialists are narrowly distributed and locally sparse. This hypothesis was tested in a community consisting of 22 species or morphospecies of parasites infecting members of 18 species of fish among 14 sites in 7 small streams in the Appalachian Mountains of North Carolina. A positive relationship between distribution (fraction of sites occupied) and abundance (average local abundance) was evident among parasite species. The number of host species infected by each parasite species was positively related to both distribution and average local abundance; both relationships held after statistical removal of the distribution and abundance of the hosts, respectively. These results support the resource-breadth hypothesis as an explanation for the distribution-abundance relationship in this system.     

兰坪铅锌尾矿区豆科根瘤菌遗传多样性ARDRA分析

通过16S rDNA扩增产物限制性片段长度多态性分析(ARDRA),对兰坪铅锌尾矿区豆科植物根瘤菌的遗传多样性进行了研究。采用限制性内切酶Hae Ⅲ、Hind Ⅲ、Hinf Ⅰ和Taq Ⅰ对16S rDNA扩增产物进行了酶切分型,根据ARDRA酶切图谱的不同,进行树状聚类。结果表明:49株根瘤菌在40%的相似水平上按氮含量不同及铅锌含量的采集地不同分别聚为OTU1、OTU2和OTU33个群,说明根瘤菌的遗传多样性及分布与土壤中的氮含量和铅锌含量有关。代表菌株的16S rDNA测序结果分析表明,它们在系统发育树上属于Rhizobium sp.、Sinorhizobium sp.和Bradyrhizobium sp.3个系统发育分支,进一步说明兰坪铅锌尾矿区豆科植物根瘤菌多样性较丰富。     

Biogeographical patterns of marine larval trematode parasites in two intermediate snail hosts in Europe

Aim We used published inventories of trematodes in Littorina littorea (L.) and Hydrobia ulvae (Pennant) in European seas to search for two basic biogeographical patterns in the spatial occurrence of various trematode species: (1) do parasite distribution and richness patterns in the two host snails overlap with known ecoregions of free‐living organisms; and (2) does trematode species richness in the snails follow latitudinal or longitudinal gradients? Location North East Atlantic. Methods We used multidimensional scaling (MDS), analysis of similarity (ANOSIM) and analysis of variance (ANOVA) to test whether there were overlaps of parasite distribution and richness with known ecoregions of free‐living organisms. In addition, we used linear regression analyses to test whether trematode richness in snails (corrected for sampling effort) was correlated with the latitude or longitude of the sampling sites. Results When corrected for sampling effort, mean trematode species richness per site did not differ among the different ecoregions in L. littorea. In contrast, in H. ulvae, mean species richness was much lower for sites from the Celtic Sea compared with sites from the Baltic Sea and the North Sea. Based on the results of MDS analyses, trematode species composition was distinct among ecoregions; in particular, communities from the Baltic Sea differed markedly from communities in the Celtic Sea, for both snail species. Latitude and longitude were not significantly correlated with parasite species richness in either snail species. Most trematode species had restricted distributions, and only three species in L. littorea and five species in H. ulvae occurred at more than 50% of the sites. Main conclusions There is more structure in the large‐scale distribution of trematodes in gastropods than one would expect from the large‐scale dispersal capabilities of their bird and fish final hosts. We propose mechanisms based both on limited dispersal via fish and bird final hosts and on gradients in environmental factors to explain the observed patterns.     

Structure, stability and species interactions in helminth communities of wood mice, Apodemus sylvaticus

The helminths of the alimentary tract of wood mice, Apodemus sylvaticus, were studied at two sites over a 33-month period. Nine helminth species were recovered regularly. All but one was absent for at least 1 month. Monthly samples from these helminth communities were more similar to samples taken in the following month than to samples taken at progressively greater intervals up to a year. Helminth communities at both sites, however, had cyclical elements. Comparison of mean similarity indices for helminth faunas from 33 monthly samples and those from data sets generated by four null models suggests that observed values did not differ from a model where relative abundance of each species was determined randomly with specific maxima of abundance and species absences based on observed data. Loss of helminth species may decrease measurements of community stability based on relative abundance while persistence of abundant species increases stability. Helminth faunas in samples of A. sylvaticus from six localities taken at the same time of year at 5-year intervals indicated that some changed radically while others remained virtually unchanged. The considerable variation in helminth communities from different localities was not related to proximity or gross habitat characteristics. Nematospiroides dubius, Corrigia vitta and Capillaria murissylvatici were important in discriminating between the parasite faunas at different sites. Abundance of Syphacia stroma varied considerably between spatial surveys reflecting differences in host population dynamics in the 2 years. The present report and data from elsewhere in Ireland suggest that species composition of the helminths associated with A. sylvaticus may be stable over a wider geographical scale. There were neither strong nor consistent positive or negative interactions between pairs of helminth species. It is concluded that the stability characteristics of this parasite community, in terms of species composition and relative abundance, are the product of the population biology of independent parasite species rather than interspecific interactions. Variation in the role of competition in parasite communities is discussed.     

Predicting the similarity of parasite communities in freshwater fishes using the phylogeny,ecology and proximity of hosts

Parasite communities tend to be dissimilar in hosts that are geographically, phylogenetically, ecologically and developmentally distant from one another. The decay of community similarity is a powerful and increasingly common method of studying parasite beta diversity, but most studies have examined only a single type of distance. Here, we evaluate distances based on the phylogeny, ecology, spatial proximity and size of hosts, as predictors of the similarity of parasite communities in individual hosts, host populations and host species. We surveyed parasites in six species of fish collected simultaneously from six localities in the St. Lawrence River, Canada, and species in a common group of larval parasites were discriminated using DNA sequences from barcode region of cytochrome c oxidase I. Distances based on the habitat use patterns of host species were good predictors of short‐term, ecological similarity of parasite communities, such as that operating at the scale of the individual host. The genetic distance between host species was associated with almost all types of similarity at all scales, particularly qualitative and phylogenetic similarity of parasite communities at the level of populations and meta‐populations of hosts. The trophic level, diet, spatial proximity and size of hosts were poor predictors of parasite community similarity. The increased taxonomic resolution provided by molecular data increased the explanatory power of regression models, and different factors were implicated when parasite species were distinguished with DNA barcodes than when larval parasites were lumped into morphospecies, as is commonly practiced.     

Shoreline distribution and parasite infection of black‐striped pipefish Syngnathus abaster Risso, 1827 in the lower River Danube

This study aimed to characterise the shoreline distribution and metazoan parasite community in black‐striped pipefish Syngnathus abaster along the freshwater section of the River Danube (Bulgaria). An extensive survey of the shoreline zone showed the regular presence of S. abaster along the entire stretch from Vetren to Vrav (395–836 river km). The preference of shoreline habitat was analysed using abundance data and the proportion of this species in the fish community within particular habitat types. Highest frequencies of occurrence and density were found in sites with a muddy substrate, as compared to gravel and sand. A subsample of S. abaster from the upper section of the Bulgarian stretch was examined for metazoan parasites. The parasite fauna comprised eight metazoan species, representing half the parasite species richness known from its original range. Only three parasite species previously reported from S. abaster were found in the Danubian range of expansion: the adult trematode Orientocreadium siluri, metacercariae of Diplostomum sp., and an accidental finding of the trematode Nicolla skrjabini. The other five species appear to have been acquired in the new area, although these were recorded at a very low prevalence and/or abundance. Syngnathus abaster, therefore, is not likely to represent an important component in native parasite life cycles. Fish condition was not affected by either total parasite abundance or abundance of core species. Regular occurrence and dominance of Syngnathus abaster indicates that this species now represents a significant component of the Danubian shoreline fish community.     

Aquatic pollution assessment based on attached diatom communities in the Pinang River Basin,Malaysia

The diatom communities collected from artificial substrates (glass slides) at 12 sampling sites along Pinang River Basin were analysed. Species composition was highly variable among sampling sites, and the highest diversity value (mean H = 3.56 bit/individual) and species richness (mean S = 17.32) was recorded at a polluted station in an estuary, which received salt-water intrusion during high tide. The downstream sampling stations were heavily organically polluted with Saprobic Index values ranging between 2.81 and 3.10, while upstream stations were relatively clean with Saprobic Index values recorded between 1.40 and 1.96. The diatom community structure and the specific sensitivity of certain diatom species can be related to the degree of water quality in Pinang River Basin. The abundance of certain diatom species could be used as biological indicators to measure impacts of river pollution.