重组人FOXL2基因的原核表达和纯化研究

目的通过pET32a（＋）原核表达载体,表达重组人叉头框蛋白L2（human forkhead box12,FOXL21）。并且进行纯化和鉴定。方法从正常人血液中提取基因组DNA,利用PCR扩增FOXL21目的基因片段,构建FOXL21原核表达重组质粒[pET32a（＋）-FOXL21]并转化E．coli的BL21（DE3）菌株,IPTG诱导重组蛋白表达,经HisTrap FF亲和层析柱纯化,再通过SDS—PAGE和Western印迹鉴定。结果成功克隆到大小为1131bp的人源FOXL21基因片段并准确插入表达载体pET32a（＋）,0．1mmol／LIPTG诱导转化菌8h可表达大量的FOXL21蛋白,并可经HisTrap FF柱亲和层析得到高度纯化。结论成功获得纯化的66kD重组人FOXL21蛋白,为后续进行FOXL21蛋白的功能研究奠定了基础。     

PTD融合蛋白的原核表达及其抗体制备

目的：为制备凋亡素重组蛋白抗体,首先获得凋亡素重组蛋白融合基因LTA,而且通过原恢表达系统表达重组蛋白并制备其抗体,为进一步利用凋亡素重组蛋白导向治疗肿瘤的检测奠定基础。方法：应用重叠延伸的基因融合技术将LHRH（黄体生成激素释放激素）基因、TAT（HW—1反式转录激活因子）基因和凋亡素基因重组,构建成凋亡素重组蛋白原核表达载体pET-28α～LTA,随后将表达质粒转入BL21菌株,经IPTG诱导表达重组融合蛋白,将已表达的重组蛋白通过Ni—NTA亲和色谱柱进行纯化,并制备LTA凋亡素重组蛋白抗体。结果：表达产物经聚丙烯酰胺凝胶电泳检测．LTA蛋白融合基因获得高效表达,凝胶薄层扫描分析表明表达蛋白占菌体蛋白12．6％。LTA蛋白经Ni—NTA亲和色谱柱柱纯化,以纯化蛋白为抗原免疫獭兔制备凋亡素重组蛋白抗血清。结果表明抗体的效价为1：12800。结论：应用重叠延伸的基因融合技术获得凋亡素重组蛋白融合基因LTA,通过原核表达系统表达重组蛋白并制备其抗体。     

绿色荧光蛋白表达载体pXS75－GFP的构建及在嗜热四膜虫中的应用

为获得能够用于构建嗜热四膜虫蛋白定位的载体,该研究将GFP基因与镉（Cd2＋）诱导的四膜虫金属硫蛋白基因（MTTl）启动子序列和终止子序列融合,获得表达载体pXS75-GFP。通过同源重组和抗性筛选,pXS75-GFP载体携带的目的基因整合入四膜虫MTTl位点,在cd2＋诱导下实现GFP融合蛋白的可控表达。将α－tubulin基因ATUl克隆JN－pXS75－GFP中,重组质粒pXS75－GFP－ATUl通过基因枪转化入四膜虫细胞,在巴龙霉素筛选下获得稳定的α-tubulin－GFP过表达细胞株。激光共聚焦显微镜观察α－tubulin．GFP的定位,结果显示,α－tubulin—GFP融合蛋白在四膜虫细胞中表达并分布于皮层上,表明pXS75．GFP载体可用于嗜热四膜虫功能蛋白的定位分析。     

林麝γ-干扰素基因的克隆、分析及表达、纯化

以RT-PCR方法,从经ConA诱导的林麝（Moschus berezovskii）外周血淋巴细胞（peripheral blood mononuclear cells,PBMC）总RNA中扩增出编码林麝IFN-γ的基因并将其克隆到pMD18-T载体上。经筛选、菌落PCR鉴定、测序、序列分析,证实为林麝IFN-γ基因编码序列（全长498bp）。将其重组到原核表达载体pGEX4T-1,并在大肠杆菌BL21中实现了高效表达。表达产物以GST（Glutathione S-transferase）融合蛋白的形式存在,表达量约占细菌总蛋白的26．9％。经NaOH法变性复性后,用GSTrap亲和柱对蛋白进行了纯化。本研究成果为进一步研究林麝IFN-γ的生物学活性及其临床应用奠定了基础． 对林麝异地保护具有重要意义。     

冠状病毒HcoV-229E S1蛋白的原核表达及鉴定

目的克隆表达冠状病毒HcoV-229E S1基因片段,表达S1蛋白。方法合成冠状病毒HcoV-229ES1蛋白特异性基因片段并克隆入pET21a原核表达载体,转化BL21（DE3）菌,经IPTG高效诱导表达得到重组蛋白,用金属螯合亲和层析纯化,并通过Western blot对表达的重组蛋白进行鉴定。结果获得了主要以包涵体形式存在的目的蛋白,Western blot鉴定其为S1基因片段蛋白。结论成功构建了HcoV-229E S1蛋白的表达载体,并在BL21（DE3）中得到了高效表达,为下一步表达蛋白免疫原性及疫苗抗病毒保护性测定打下了基础。     

重组马槟榔甜蛋白MabinlinⅡ在大肠杆菌中的表达

Mabinlin Ⅱ是我国所特有且唯一的植物甜蛋白,在体外至今没有得到具有甜味的基因表达产物.本文根据已知马槟榔甜蛋白的序列设计引物克隆Mabinlin Ⅱ基因,对基因进行剪切重组.将重组基因克隆至大肠杆菌表达载体pET-30a(+)中,构建了3个重组表达载体,转化大肠杆菌BL21(DE3),得到三株表达重组马槟榔甜蛋白的大肠杆菌工程菌.经IPTG诱导,3个重组MabinlinⅡ基因可在大肠杆菌BL21(DE3)中高效表达.     

弗氏柠檬酸菌甘油脱水酶基因在大肠杆菌中的克隆和表达

以弗氏柠檬酸菌（Citrobacter freundii）基因组DNA为模板,通过PCR得到甘油脱水酶（glycerol dehydratase）基因dhaB、dhaC、dhaE,克隆到表达载体pSE380上,得到重组质粒pSn-dhaBCE。将此重组质粒转化到E．coli JM109中,重组菌株SDS-PAGE结果显示有明显的61kD、22kD、16kD三条特异性蛋白条带出现。重组菌株经诱导表达,酶活力为11．59U／mL。     

苦瓜MAP30蛋白的原核表达及其生物活性研究

以天然苦瓜基因组为模板PCR扩增去前导肽后成熟的MAP30蛋白基因,克隆至可诱导表达载体pET28a中。将含MAP30基因的表达载体pET28a-MAP30转化至E. coli Rostta（DE3）中并通过IPTG诱导表达。经聚丙烯酰胺凝胶电泳（SDS-PAGE）和蛋白杂交（Western blot）以及液相色谱-质谱（LC-MS）对表达的重组MAP30蛋白进行鉴定,并通过镍柱亲和层析纯化。将pUC19质粒与不同浓度的纯化后的重组MAP30蛋白孵育,分析其切割DNA的活性。同时将纯化后的重组MAP30蛋白体外作用于人乳腺癌细胞（MCF-7）,采用MTT、AO/PI双染等方法进行抗肿瘤活性分析。实验结果表明纯化后的蛋白经质谱鉴定和Western blot分析,目的蛋白成功地与His-tag融合表达。首次发现大肠杆菌异源表达的重组MAP30蛋白同天然蛋白一样可以切割超螺旋DNA活性。MTT、AO/PI双染结果证实重组MAP30体外可诱导MCF-7细胞发生凋亡。通过基因工程技术大量制备MAP30蛋白,进一步研究其体外生物学活性,为以后的临床应用奠定基础。     

宫颈癌相关BLCAP基因的原核表达及条件优化

目的利用大肠埃希菌表达系统表达宫颈癌相关BLCAP基因,并优化表达条件。方法利用PCR技术从逆转录病毒重组载体pL（BLCAP）SN中扩增宫颈癌相关BLCAP基因,将其插入到原核表达载体pET-32（a）中,从而构建原核表达重组质粒pET-32（a）-BLCAP,随后将阳性重组质粒转化到表达宿主菌中,通过IPTG诱导表达并优化表达条件,所表达的带有His标签目的融合蛋白经Ni^2＋亲和层析纯化回收,并采用SDS—PAGE和Western印迹对目的蛋白进行分析和鉴定。结果构建的重组表达质粒经PCR、酶切和DNA测序鉴定与预期的结果一致,含有重组质粒的表达宿主菌经过IPTG诱导表达了分子量约为28ku的融合蛋白,并经优化确定了最佳的诱导表达条件。结论成功构建了pET-32（a）-BLCAP原核表达质粒,表达并经纯化得到了BLCAP目的蛋白,为研究该蛋白的性质及其制备针对该蛋白的抗体奠定了基础。     

苏云金芽孢杆菌δ—内毒素cryIA（c）基因在大肠杆菌和变铅青链？…

利用合成的寡聚核苷酸片段,从质粒ｐＯＳ１０００中分离出具有适合克隆位点的苏云金芽直菌δ－内毒素ｃｒｙＩＡ（ｃ）全长基因。将该基因与大肠杆菌表达载体ＰＫＫ２２３－３重组,并引入大肠杆菌ＪＭ１０９中,经ＩＰＴＧ诱导,获得了超量表达的ＣｒｙＩＡ（ｃ）蛋白将ｃｒｙＩＡ（ｃ）全长基因插入链霉菌表达载体ＰＨＺ１２７２中,得到重组质粒,ＰＨＺ１２５６,将该质粒引入变铅青链霉菌ＪＴ４６中,经硫链丝菌素诱导,通过Ｗ     

Symmetric primary and tertiary structure mutations within a symmetric superfold: a solution, not a constraint, to achieve a foldable polypeptide

In previous studies designed to increase the primary structure symmetry within the hydrophobic core of human acidic fibroblast growth factor (FGF-1) a combination of five mutations were accommodated, resulting in structure, stability and folding kinetic properties similar to wild-type (despite the symmetric constraint upon the set of core residues). A sixth mutation in the core, involving a highly conserved Met residue at position 67, appeared intolerant to substitution. Structural analysis suggested that the local packing environment of position 67 involved two regions of apparent insertions that distorted the tertiary structure symmetry inherent in the beta-trefoil architecture. It was postulated that a symmetric constraint upon the primary structure within the core could only be achieved after these insertions had been deleted (concomitantly increasing the tertiary structure symmetry). The deletion of these insertions is now shown to permit mutation of position 67, thereby increasing the primary structure symmetry relationship within the core. Furthermore, despite the imposed symmetric constraint upon both the primary and tertiary structure, the resulting mutant form of FGF-1 is substantially more stable. The apparent inserted regions are shown to be associated with heparin-binding functionality; however, despite a marked reduction in heparin-binding affinity the mutant form of FGF-1 is surprisingly approximately 70 times more potent in 3T3 fibroblast mitogenic assays. The results support the hypothesis that primary structure symmetry within a symmetric protein superfold represents a possible solution, rather than a constraint, to achieving a foldable polypeptide.     

Integrating statistical pair potentials into protein complex prediction

The biophysical study of protein-protein interactions and docking has important implications in our understanding of most complex cellular signaling processes. Most computational approaches to protein docking involve a tradeoff between the level of detail incorporated into the model and computational power required to properly handle that level of detail. In this work, we seek to optimize that balance by showing that we can reduce the complexity of model representation and thus make the computation tractable with minimal loss of predictive performance. We also introduce a pair-wise statistical potential suitable for docking that builds on previous work and show that this potential can be incorporated into our fast fourier transform-based docking algorithm ZDOCK. We use the Protein Docking Benchmark to illustrate the improved performance of this potential compared with less detailed other scoring functions. Furthermore, we show that the new potential performs well on antibody-antigen complexes, with most predictions clustering around the Complementarity Determining Regions of antibodies without any manual intervention.     

The heat capacity of proteins

The heat capacity plays a major role in the determination of the energetics of protein folding and molecular recognition. As such, a better understanding of this thermodynamic parameter and its structural origin will provide new insights for the development of better molecular design strategies. In this paper we have analyzed the absolute heat capacity of proteins in different conformations. The results of these studies indicate that three major terms account for the absolute heat capacity of a protein: (1) one term that depends only on the primary or covalent structure of a protein and contains contributions from vibrational frequencies arising from the stretching and bending modes of each valence bond and internal rotations; (2) a term that contains the contributions of noncovalent interactions arising from secondary and tertiary structure; and (3) a term that contains the contributions of hydration. For a typical globular protein in solution the bulk of the heat capacity at 25°C is given by the covalent structure term (close to 85% of the total). The hydration term contributes about 15 and 40% to the total heat capacity of the native and unfolded states, respectively. The contribution of non-covalent structure to the total heat capacity of the native state is positive but very small and does not amount to more than 3% at 25°C. The change in heat capacity upon unfolding is primarily given by the increase in the hydration term (about 95%) and to a much lesser extent by the loss of noncovalent interactions (up to ～5%). It is demonstrated that a single universal mathematical function can be used to represent the partial molar heat capacity of the native and unfolded states of proteins in solution. This function can be experimentally written in terms of the molecular weight, the polar and apolar solvent accessible surface areas, and the total area buried from the solvent. This unique function accurately predicts the different magnitude and temperature dependences of the heat capacity of both the native and unfolded states, and therefore of the heat capacity changes associated with folding/unfolding transitions. © 1995 Wiley-Liss, Inc.     

Protein microarrays as a discovery tool for studying protein–protein interactions

Exploring the function of the genome and the encoded proteins has emerged as a new and exciting challenge in the postgenomic era. Novel technologies come into view that promise to be valuable for the investigation not only of single proteins, but of entire protein networks. Protein microarrays are the innovative assay platform for highly parallel in vitro studies of protein–protein interactions. Due to their flexibility and multiplexing capacity, protein microarrays benefit basic research, diagnosis and biomedicine. This review provides an overview on the basic principles of protein microarrays and their potential to multiplex protein–protein interaction studies.     

Lethal mutations in the major homology region and their suppressors act by modulating the dimerization of the rous sarcoma virus capsid protein C‐terminal domain

An infective retrovirus requires a mature capsid shell around the viral replication complex. This shell is formed by about 1500 capsid protein monomers, organized into hexamer and pentamer rings that are linked to each other by the dimerization of the C‐terminal domain (CTD). The major homology region (MHR), the most highly conserved protein sequence across retroviral genomes, is part of the CTD. Several mutations in the MHR appear to block infectivity by preventing capsid formation. Suppressor mutations have been identified that are distant in sequence and structure from the MHR and restore capsid formation. The effects of two lethal and two suppressor mutations on the stability and function of the CTD were examined. No correlation with infectivity was found for the stability of the lethal mutations (D155Y‐CTD, F167Y‐CTD) and suppressor mutations (R185W‐CTD, I190V‐CTD). The stabilities of three double mutant proteins (D155Y/R185W‐CTD, F167Y/R185W‐CTD, and F167Y/I190V‐CTD) were additive. However, the dimerization affinity of the mutant proteins correlated strongly with biological function. The CTD proteins with lethal mutations did not dimerize, while those with suppressor mutations had greater dimerization affinity than WT‐CTD. The suppressor mutations were able to partially correct the dimerization defect caused by the lethal MHR mutations in double mutant proteins. Despite their dramatic effects on dimerization, none of these residues participate directly in the proposed dimerization interface in a mature capsid. These findings suggest that the conserved sequence of the MHR has critical roles in the conformation(s) of the CTD that are required for dimerization and correct capsid maturation. Proteins 2013. © 2012 Wiley Periodicals, Inc.     

A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins

A previously developed computer program for protein design, RosettaDesign, was used to predict low free energy sequences for nine naturally occurring protein backbones. RosettaDesign had no knowledge of the naturally occurring sequences and on average 65% of the residues in the designed sequences differ from wild-type. Synthetic genes for ten completely redesigned proteins were generated, and the proteins were expressed, purified, and then characterized using circular dichroism, chemical and temperature denaturation and NMR experiments. Although high-resolution structures have not yet been determined, eight of these proteins appear to be folded and their circular dichroism spectra are similar to those of their wild-type counterparts. Six of the proteins have stabilities equal to or up to 7kcal/mol greater than their wild-type counterparts, and four of the proteins have NMR spectra consistent with a well-packed, rigid structure. These encouraging results indicate that the computational protein design methods can, with significant reliability, identify amino acid sequences compatible with a target protein backbone.     

蛋白质相互作用研究的新技术与新方法

目前,蛋白质相互作用已成为蛋白质组学研究的热点. 新方法的建立及对已有技术的改进标志着蛋白质相互作用研究的不断发展和完善．在技术改进方面,本文介绍了弥补酵母双杂交的蛋白定位受限等缺陷的细菌双杂交系统;根据目标蛋白特性设计和修饰TAP标签来满足复合体研究要求的串联亲和纯化技术,以及在双分子荧光互补基础上发展的动态检测多个蛋白质间瞬时、弱相互作用的多分子荧光互补技术．还综述了近两年建立的新方法：与免疫共沉淀相比,寡沉淀技术直接研究具有活性的蛋白质复合体;减量式定量免疫沉淀方法排除了蛋白质复合体中非特异性相互作用的干扰;原位操作的多表位－配基绘图法避免了样品间差异的影响,以及利用多点吸附和交联加固研究弱蛋白质相互作用的固相蛋白质组学方法.     

Improvement of protein stability in protein microarrays

Protein stability in microarrays was improved using protein stabilizers. PEG 200 at 30% (w/v) was the most efficient stabilizer giving over 4-fold improvement in protein stability compared to without the stabilizer. PEG 200 above 10% (w/v) in the array solution prevented the evaporation of water in the sample and thereby improved protein stability in the microarray. When the streptavidin-biotin binding reaction was performed under optimized conditions, biotin-BSA-fluorescein isothiocyanate (FITC) was detected from 1 ng ml^–1 to 5 g ml^–1 by fluorescence analysis.     

A solubility-enhancement tag (SET) for NMR studies of poorly behaving proteins

Protein-fusion constructs have been used with great success for enhancing expression of soluble recombinant protein and as tags for affinity purification. Unfortunately the most popular tags, such as GST and MBP, are large, which hinders direct NMR studies of the fusion proteins. Cleavage of the fusion proteins often re-introduces problems with solubility and stability. Here we describe the use of N-terminally fused protein G (B1 domain) as a non-cleavable solubility-enhancement tag (SET) for structure determination of a dimeric protein complex. The SET enhances the solubility and stability of the fusion product dramatically while not interacting directly with the protein of interest. This approach can be used for structural characterization of poorly behaving protein systems, and would be especially useful for structural genomics studies.