安徽黄山发现孟闻琴蛙

琴蛙属(Nidirana)是广泛分布于东洋界的两栖动物，目前安徽省琴蛙属仅记录了弹琴蛙 (N. adenopleura)1种。2022年7月在安徽省黄山地区(九龙峰自然保护区和马金岭自然保护区)采集到9号两栖动物标本，其形态特征与孟闻琴蛙(N. mangveni)相似；此外，基于线粒体COI基因片段的分子系统发育分析显示，此次采集到的琴蛙标本与孟闻琴蛙聚为一支，且具有高的支持率(贝叶斯后验概率/最大似然支持率为1.00/98%)，而且和孟闻琴蛙遗传距离最近，与模式产地的孟闻琴蛙遗传距离仅有0.04%。因此，结合形态比较和分子系统学分析，鉴定此次采集的琴蛙属标本为孟闻琴蛙，为安徽省两栖动物分布新记录种。这一发现将孟闻琴蛙的分布范围扩展至皖南地区，为琴蛙属和皖南地区的生物地理学和地史研究提供了重要数据。     

广西发现荔波臭蛙

荔波臭蛙（Odorrana liboensis）已知仅分布于贵州省荔波县茂兰国家级自然保护区。2021年8月,在广西壮族自治区百色市那坡县弄尧（23°01′21″ N,105°50′58″ E）采集到2号臭蛙标本（1雌,1雄）。经鉴定为荔波臭蛙,属广西两栖纲新记录物种。2号标本在形态上与荔波臭蛙模式标本基本一致,仅体型大小和腹部体色稍有差异。基于线粒体16S rRNA基因部分序列构建的系统发育树表明,荔波臭蛙那坡种群与模式标本聚为一支,支持率为100%,遗传距离为1.5%。本研究表明,荔波臭蛙广西那坡种群与模式产地种群存在一定的遗传和形态分化,可为蛙类生物地理学研究提供基础数据。     

湖南通道发现雷山琴蛙

2020年5月23日在湖南省通道县万佛山镇(26° 11′47″N,109°56′21″E,海拔924 m)采集到4号两栖动物标本,经形态特征比较,与雷山琴蛙(Nidirana leishanensis)相似;基于线粒体16S rRNA构建的琴蛙属(Nidirana)部分物种贝叶斯系统发育树显示,此次采集的琴蛙标本与雷...     

河北塞罕坝冬季黑琴鸡种群密度调查

2007年12月对河北塞罕坝地区的黑琴鸡(Lyrurus tetrix)冬季种群密度进行了专项集中调查.越冬期种群密度为3.26只/km2,与历史资料对比,该地区黑琴鸡种群密度呈明显下降趋势.这与该地区栖息地的质量恶化、人类活动日益加剧和偷捕偷猎活动有关.     

中国黑斑蛙种群的线粒体DNA多样性和生物地理演化过程的初探

本文通过对黑斑蛙 8个地方种群 2 5 7个标本的线粒体基因组Cytb基因片段的序列分析 ,探讨了其种群遗传多样性的现代分布格局及其生物地理演化过程。对所检测出的 79个单倍型的分析表明 :黑斑蛙在我国分布区内中部地区的种群遗传多样性高于南北边缘种群。种群间基因流同地理隔离距离呈显著负相关 ,种群遗传分化符合距离隔离或脚踏石模型。线粒体单倍型以广西和四川种群的个体的遗传分化为最深 ,反映出西部山区的屏障隔离效应。单倍型歧点分布分析表明 ,约 10 3- 2 2 6万年前 ,即在末次间冰期 ,黑斑蛙在其分布范围内经历过一次大规模的种群扩张事件。单倍型的分布格局和共享情况显示黑斑蛙种群在冰期后的重新扩张过程主要表现为由南往北的递进式扩散形式。第四纪冰期气候的反复波动导致了黑斑蛙适宜生境在纬度方向上的平移 ,进而导致黑斑蛙种群随生境变化而进行扩张或收缩 ,使黑斑蛙种群的遗传多样性能始终保持在分布区中间高而南北两端低 ,并形成了现代的分布格局     

湖南省花臭蛙复合体分类及分布格局

运用形态特征系统聚类和分子系统学分析,研究先前报道的湖南省花臭蛙(Odorrana schmackeri)各地理种群的分类组成及其分布格局。结果显示,原认定的花臭蛙湖南省各地理种群已分化为花臭蛙和黄岗臭蛙(O.huanggangensis)两个物种。分布于湘西南及南部雪峰山和南岭的花臭蛙种群应修订为黄岗臭蛙,为湖南省臭蛙属物种新发现,湘西北及湘东南罗霄山脉的种群为花臭蛙,黄岗臭蛙与花臭蛙在张家界市武陵源景区同域分布。湘西北武陵山与雪峰山之间以及湘中丘陵地带花臭蛙种群的分类归属,黄岗臭蛙和花臭蛙在湖南省分布格局的形成以及同域分布的机制值得探讨。     

河北塞罕坝秋季黑琴鸡种群密度调查

2009年10月对河北塞罕坝地区的黑琴鸡(Lyrurus tetrix)秋季种群密度进行了专项集中调查。结果表明,秋季种群密度为2.20只/km2;与历史资料对比,该地区黑琴鸡种群密度呈明显下降趋势;种群分布发生了变化;繁殖基数、繁殖成功率下降和秋季猎捕是造成黑琴鸡秋季数量下降的主要因素。目前,加强管理、阻止盗猎活动是保护当地黑琴鸡种群的最有效措施。     

澳门发现台北纤蛙

2014年6月,在澳门进行两栖爬行动物调查期间,在九澳湿地采集到2只台北纤蛙(Hylarana taipehensis),为澳门首次发现此物种。近年来调查表明,澳门台北纤蛙的种群数量十分稀少,需要加强种群动态监测和保护工作。     

Paa bourreti的有效性及其在中国的新纪录

用线粒体12S和16S基因序列对双团棘胸蛙Paa yunnanensis的8个种群和越南的Paa bourreti进行分子系统发育分析,结果表明,双团棘胸蛙景东种群与Paa bourreti聚为一支,而其他7个种群聚为一支;以上两支问的遗传分化水平已经达到种级.此外,形态比较结果表明景东地区标本与双团棘胸蛙形态特征不同而与P.bourreti基本一致.因此,支持P.bourreti为有效种,双团棘胸蛙景东种群应为P.bourreti,为中国新纪录;推测其在云南南部其他区域也有分布.根据云南景东的标本,本文对P.bourreti进行了形态补充描述.     

沼蛙(Rana guentheri)种内遗传分化状况初步研究

本文测定了香港特别行政区内沼蛙(Rana guentheri)多个种群的线粒体16S rRNA基因部分DNA序列,并与广州及越南共4个沼蛙基因序列作对比,研究各地区种群遗传分化状况,研究表明三个地区之间的序列遗传分化为0．4％～1．1％,表明沼蛙mtDNA 16S rRNA基因进化速率比较低,其中香港沼蛙10个个体在mtDNA 16S rRNA基因上没有出现变异,共发现5种单倍型,其中香港与广州种群关系最近,越南河内种群与志玲种群关系最近。     

Cytochrome c oxydase I phylogenetic analysis of Haemogregarina parasites (Apicomplexa,Coccidia, Eucoccidiorida,Haemogregarinidae) confirms the presence of three distinct species within the freshwater turtles of Tunisia

Species of Haemogregarina are apicomplexan blood parasites that use vertebrates as intermediate hosts. Due to limited interspecific morphological characters within the genus during the last decade, 18S rRNA gene sequences were widely used for species identification. As coinfection patterns were recently reported from nuclear molecular data for two sympatric freshwater turtles Mauremys leprosa and Emys orbicularis from Tunisia, our objectives were to design COI specific primers to confirm the presence of three distinct species in both host species. Blood samples were collected from 22 turtles, from which DNAs were extracted and used as templates for amplification. Following different rounds of PCR and nested PCR, we designed specific Haemogregarina COI primers that allowed the sequencing of nine distinct haplotypes. Phylogenetic Bayesian analysis revealed the occurrence of three well-differentiated sublineages that clustered together into a single clade. Based on pairwise genetic distances (p-distance), we confirmed the occurrence of three distinct but phylogenetically closely related species coinfecting M. leprosa and E. orbicularis in the same aquatic environments. Our results demonstrate that the use of fast evolving genes within Haemogregarina will help to investigate the parasite diversity within both intermediate vertebrate and definitive invertebrate hosts, and to assess the evolution, historical biogeography and specificity of haemogregarines.     

罗氏沼虾不同群体线粒体COI基因的序列差异和遗传标记研究

利用PCR方法扩增获得罗氏沼虾（Macrobrachiumrosenbergii）线粒体DNA的COI基因,测定该基因片段序列。分析了罗氏沼虾缅甸原种F1代、江苏养殖群体和广西选育F2代3个群体共17只个体的序列核苷酸位点差异和遗传多态。结果表明,缅甸原种F1代遗传多样性最为丰富,江苏养殖群体和广西选育群体的遗传多样性相对贫乏。在长度为498bp的基因片段中,共检测到10个多态性核苷酸位点（占2.01%）,17只个体具有5种基因型,3群体各自的平均核苷酸位点差异分别为0.88%、0.07%和0。UPGMA分子系统聚类树显示,江苏养殖群体和广西选育群体的遗传关系最近,其单倍型混杂聚成一支,而缅甸原种F1群体相对独立为另外一支。COI基因可以作为区分两分支群体的遗传标记。     

Genetic diversity of genus Vespa including an invaded species of V. velutina (Hymenoptera: Vespidae) in Korea inferred from DNA barcoding data

With about 5000 known species, the Vespidae is a large family belongs to order Hymenoptera. The genus Vespa with 22 species is one of the four genera of the subfamily Vespinae. In Korea, 10 species and subspecies are recognized. Because of their social behavior, their treat to human health and their impact in apiculture, the reliable and sometimes automated identification of these insects to species level are important. To test the efficacy of DNA barcoding method for identification of species of the genus Vespa in Korea, 30 samples of eight Korean species of genus Vespa were collected and mitochondrial DNAs of 658 bp fragment cytochrome oxidase subunit 1 (CO1) region were sequenced. A Bayesian Inference based on COI gene of the Korean Vespa species was constructed. The phylogenetic tree shoed that identification of all specimens is possible based on COI gene and we found strong relation between the sequences of the collected species from different localities in South Korea which clustered together with 100% support with sequences of the same species in GenBank. The results demonstrate that DNA barcoding is a useful technique for rapid and accurate species recognition in Korean Vespa species. The DNA barcode part of COI for V. binghami is provided for the first time that can help for identification of this species through DNA barcoding. Also, the genetic diversity among Korean Vespa velutina was zero suggests that the invasion might have occurred in a single event with small number of founders.     

Phylogenetic analyses of the rhipicephaline ticks indicate that the genus Rhipicephalus is paraphyletic

We inferred the phylogeny of 21 species and subspecies of ticks from the subfamilies Rhipicephalinae and Hyalomminae using cytochrome c oxidase subunit I (COI) and 12S rRNA mitochondrial gene sequences. Two members of the subfamily Haemaphysalinae were used for outgroup reference. The largest rhipicephaline genus, Rhipicephalus, was represented by ticks from six of the species groups, the second largest genus, Dermacentor, by species from two of three of its subgenera, and the genus Boophilus by 3 of its 5 species. We analyzed the 12S and COI sequences separately and together; statistically significant incongruence between the 12S rDNA and the COI sequences was not detected in the combined dataset using the incongruence length difference test. The combined dataset provided greater phylogenetic resolution than the individual datasets, and although the 12S rDNA data had only 25% of the parsimony-informative characters, it provided half of the total partitioned Bremer support for the combined dataset. We present the first hypothesis of phylogenetic relationships among some species groups of Rhipicephalus but our most controversial result was that the genus Rhipicephalus is apparently paraphyletic, unless species of Boophilus are included in it. The species of Rhipicephalus most closely related to Boophilus spp. were from the R. pravus and R. evertsi species groups, which may implicate an African origin for this important group of ticks.     

Phenotypic divergence and molecular characterization of two sympatric species of genus Barilius (Hamilton) from the River Chenab of Western Himalaya

Barilius bendelisis and Barilius vagra inhabit mostly in the spring‐fed streams of Indian Himalaya and constitute an important portion of protein diet of the rural human population residing near the stream banks. In spite of large aquaculture importance of this genus very less morphometric and molecular studies have been conducted. This study addresses morphometric and molecular characterization of B. bendelisis and B. vagra by using truss analysis and mitochondrial COI gene. A total of 293 samples of Barilius bendelisis and 127 samples of Barilius vagra were collected from three different sites of Chenab river basin from March 2015 to April 2017. 14 landmarks were used to measure 90 truss measurements from digital images of specimens using network of three softwares, tpsUtil, tpsDig2 and PAST. A total of 89 distance variables exhibited significant differences among the populations. The principal component analysis generated ten components explaining 89.164% of total variance among six populations of B. bendelisis and B. vagra. 89.0% of individuals of B. bendelisis and B. vagra were classified into their original groups. The Phylogenetic analysis with other published COI sequences revealed distinct nature of these two species. The study may aid in taxonomic identification and phenotypic divergence which will be helpful in proper conservation and management of these species of hill trout in India.     

DNA barcoding discriminates echinoderm species

DNA barcode sequences (a 657-bp segment of the mtDNA cytochrome oxidase I gene, COI) were collected from 191 species (503 specimens) of Echinodermata. All five classes were represented: Ophiuroidea, Asteroidea, Echinoidea, Holothuroidea and Crinoidea. About 30% of sequences were collected specifically for this study, the remainder came from GenBank. Fifty-one species were represented by multiple samples, with a mean intraspecific divergence of 0.62%. Several possible instances of cryptic speciation were noted. Thirty-two genera were represented by multiple species, with a mean congeneric divergence of 15.33%. One hundred and eighty-seven of the 191 species (97.9%) could be distinguished by their COI barcodes. Those that could not were from the echinoid genus Amblypneustes. Neighbour-joining trees of COI sequences generally showed low bootstrap support for anything other than shallow splits, although with very rare exceptions, members of the same class clustered together. Two ophiuran species, in both nucleotide and amino acid neighbour-joining trees, grouped loosely as sister taxa to Crinoidea rather than Ophiuroidea; sequences of these two species appear to have evolved very quickly. Results suggest that DNA barcoding is likely to be an effective, accurate and useful method of species diagnosis for all five classes of Echinodermata.     

DNA barcoding as a heuristic tool for classifying undescribed Nearctic Myrmica ants (Hymenoptera: Formicidae)

The Palearctic species of the ant genus Myrmica are well studied. In contrast, the taxonomy of the Nearctic species is outdated, making identification impossible. We collected Myrmica samples in the Holarctic and investigated their diversity using mtDNA data. We analysed a barcode sequence of the Cytochrome Oxidase I gene for 57 Palearctic and 293 Nearctic Myrmica samples. We used sequences of known Palearctic species to search for Myrmica barcode patterns. All but one Palearctic species groups were recovered. The Nearctic diversity was much higher than known. We retrieved the punctiventris, crassirugis and incompleta groups, and established nine additional tentative species groups. Genetic distance analysis revealed a large overlap of intra- and inter-specific distances in Palearctic species and species groups. We could not find a variation gap to separate Nearctic sequences into species with COI data only. Variation in scape morphology divided two genetic groups further. Scape morphology correlated with most molecular groups, except three specimens. Our results illustrate that barcoding, using only a limited amount of genetic information, cannot serve as a universal proxy for taxonomy and species demarcation. It should be considered a first step in understanding the taxonomic diversity of an unknown group of organisms.     

Genetic structure of the endangered species <Emphasis Type="Italic">Pinna nobilis</Emphasis> (Mollusca: Bivalvia) inferred from mtDNA sequences

This study examines the population genetic structure of the endangered bivalve Pinna nobilis (Mollusca: Bivalvia), based on novel mtDNA sequences (partial COI and 16S rDNA mtDNA genes). The analyzed nucleotide sequences of COI were 729 bp in size, coding for a 243 amino acid peptide, while the analyzed nucleotide sequences of 16S rDNA were 489 bp in size. These sequences of P. nobilis were the first DNA sequences of the species submitted to any Genetic Data Base. Population samples from four geographic regions from Greece, as well as a population sample of Atrina fragilis (as an outgroup) were used. High values of haplotypic diversity were found in the population samples of P. nobilis, based on the COI sequences. A single base in the analyzed 16S rDNA sequences was different in all analyzed individuals from a single population sample (Chios island) differentiating it from the other ones. These mtDNA sequences could be informative for further genetic analyses of the endangered species, contributing in conservation plans for its protection and/or aquaculture investigations.