影像基因组学分析方法研究进展

在生物医学大数据背景下,精准医学的研究重点之一是基因型数据和表型数据的融合及关联分析,通过数据融合及关联分析,认识疾病表型特征与基因多态性及基因活动之间的关系。影像基因组学作为一个新兴研究领域,它将疾病影像数据和基因组数据整合,并挖掘两者之间的联系,从而发现能够反映基因多态或表达的影像特征,在此基础上建立基于影像特征的非侵入式疾病诊断方法,是目前生物医学最有前景的研究领域之一。综述了影像基因组学领域的研究方法,包括基因组数据分析、影像数据分析以及基因组数据-影像数据融合分析方法。在此基础上,介绍了影像基因组学目前在临床上的典型应用,包括疾病的辅助诊断、预后预测和疗效评估。最后,对影像基因组学的未来发展进行了展望。     

基于机器学习的医学影像分析在药物研发和精准医疗方面的应用

MRI,PET,和CT等医学影像在新药研发和精准医疗中起着越来越重要的作用。影像技术可以被用来诊断疾病,评估药效,选择适应患者,或者确定用药剂量。 随着人工智能技术的发展,特别是机器学习以及深度学习技术在医学影像中的应用,使得我们可以用更短的时间,更少的放射剂量获取更高质量的影像。这些技术还可以帮助放射科医生缩短读片时间,提高诊断准确率。除此之外,机器学习技术还可以提高量化分析的可行性和精度,帮助建立影像与基因以及疾病的临床表现之间的关系。首先根据不同形态的医学影像,简单介绍他们在药物研发和精准医疗中的应用。并对机器学习在医学影像中的功能作一概括总结。最后讨论这个领域的挑战和机遇。     

中华菊头蝠头骨形态特征地理差异的研究

中华菊头蝠是由鲁氏菊头蝠华东亚种提升的一个种.本文测量了海南、广东以及川渝地区中华菊头蝠的23项头骨形态测量指标,应用主成分分析、判别分析和单变量分析方法对中华菊头蝠头骨测量值进行数据处理和分析.主成分分析结果表明,3个地域种群的头骨在总体形态上存在显著的差异;判别分析和单变量分析的结果亦与上述结论相符;沿海种群头骨形态的绝大部分指标比川渝种群大.     

形态测量学(Morphometrics)常用方法及其在微体古生物学中的应用

形态测量学用定量化的方法和手段描述、研究对象形态特征。几何形态测量学是形态测量学的分支,用界标点或轮廓线等标识研究对象的形态,并运用多变量运算进行量化分析和判别。形态测量学方法在生物学与古生物学领域的应用日益广泛,在生物的个体发育、系统演化、类群判别等方面均可发挥重要作用。本文重点介绍了目前在形态测量学中常用的数据类型、分析方法与步骤,即线性距离、界标点、轮廓线等数据类型的获取,普鲁克迭加、傅里叶转换、特征形状分析与增强特征形状分析等数据转换方法,以及主变量分析、典型变量分析等常用多变量线性回归方法的原理与分析过程。选择以类有孔虫个体发育与类群鉴定中几何形态测量学的应用为例,解释最常用的多变量线性回归方法——主成分分析与典型变量分析的应用与结果剖析。     

CBCT在口腔正畸领域的应用

CBCT作为一种新兴辅助诊断技术,近年来广泛应用于口腔领域,本文对CBCT在口腔正畸学领域的多方面应用进行了综合阐述,包括微种植钉、阻生牙、颞下颌关节、气道和软组织分析等,同时通过与传统影像技术的对比,进一步展示了CBCT的独特优势.     

基于几何形态测量学的磷酸三(1,3-二氯-2-丙基)酯对鲢仔鱼形态影响研究

为了解磷酸三(1,3-二氯-2-丙基)酯(TDCIPP)对鲢仔鱼生长抑制性在外部形态上的表现性状,研究基于几何形态测量学方法对0.05、0.5、5和50μg/L共4个浓度组与对照组进行组间形态性状差异比较分析。利用PLYMPLUS系统获取鲢仔鱼样本图像信息并测量体长,利用万分电子天平称量体重,使用TPS系列软件提取坐标点数据,并通过Morpho J软件完成主成分分析、典型变量分析及结果可视化。除0.05μg/L浓度组外,其他浓度组鲢仔鱼的体长、体重均显著低于对照组,表明TDCIPP对鲢仔鱼的生长发育具有抑制效应。主成分分析和典型变量分析结果显示,第一主成分(PC1)和第二主成分(PC2)共占总体变量的62.15%(分别为47.64%和14.51%);第一典型变量(CV1)和第二典型变量(CV2)共占总体变量的79.48%(分别为54.55%和24.93%),满足用于鲢仔鱼形态分析的要求。网格轮廓分析结果显示,各浓度组鲢仔鱼平均形态均与对照组间存在显著差异(P<0.05),并且主要表现为头部、躯干纵轴和尾部发育迟缓。     

基于遥感的建筑物高度快速提取研究综述

近年来我国城市化进程不断推进,不仅体现在城市面积上的增长,也体现在建筑物高度的增长。高度增长一方面能尽量克服城市土地资源匮乏的瓶颈,另一方面为优化城市结构及城市功能做出贡献。在城市遥感研究领域,对于城市建筑物高度的提取也成为研究的重点。城市建筑物高度的估计与测量,已成为城市规划和扩张、城市灾害风险预警与评估的重要参数,同时也为数字城市三维模型的建立提供了基础测绘资料。分别基于光学遥感影像、高分辨率SAR(Synthetic Aperture Radar)影像以及光学遥感影像与高分辨率SAR影像的融合三方面,全面阐述城市建筑物高度的提取方法,并比较两类影像在提取建筑物高度的优劣势,通过回顾早年研究方法,逐步引入近年来新的发展趋势。     

多尺度遥感综合监测我国北方典型草原区植被盖度

利用多尺度遥感影像综合进行全球和区域尺度的土地利用/覆盖变化(LUCC)研究是最近全球变化研究的重要方向之一。本文综合利用野外群落样方、数字相机、ETM+影像、NOAA/AVHRR影像,在遥感、GIS和GPS支持下,对我国北方典型草原区植被盖度进行了综合监测、模拟与分析。结果表明:(1) 利用经处理后的数字相机影像测量盖度的结果准确性较高,可以作为植被盖度测量的标准结果,反映真实的覆盖特征,并用以验证利用其它方法测量结果的精度。(2) 利用野外1 m2样方网格法目视估测的植被盖度结果变化较大,不稳定。本次实验中,与数字相机测量结果相比,样方估测的盖度普遍偏高,平均偏差为9.92%;但两者相关性较好(r2=0.89)。(3) 采用Gutman模型ETM+影像、NOAA/AVHRR影像反演植被盖度的结果与数字相机测量结果偏差分别为7.03%、7.83%,ETM+像元分解NOAA像元后得到的植被盖度与数字相机测量结果偏差5.68%。三者与数字相机测量结果的相关系数r2分别为0.78、0.61和0.76。(4)利用野外实测植被盖度数据直接与NOAA-NDVI影像建立统计模型估算植被盖度的精度较低(r2=0.65),而通过空间分辨率介于两者之间的ETM+影像进行转换后,该精度得到一定的提高(r2=0.80)。利用像元分解的方法提高了大尺度植被盖度监测的精度,是利用遥感数据进行尺     

多尺度遥感综合监测我国北方典型草原区植被盖度

利用多尺度遥感影像综合进行全球和区域尺度的土地利用/覆盖变化(LUCC)研究是最近全球变化研究的重要方向之一.本文综合利用野外群落样方、数字相机、ETM+影像、NOAA/AVHRR影像,在遥感、GIS和GPS支持下,对我国北方典型草原区植被盖度进行了综合监测、模拟与分析.结果表明:(1)利用经处理后的数字相机影像测量盖度的结果准确性较高,可以作为植被盖度测量的标准结果,反映真实的覆盖特征,并用以验证利用其它方法测量结果的精度.(2)利用野外1 m2样方网格法目视估测的植被盖度结果变化较大,不稳定.本次实验中,与数字相机测量结果相比,样方估测的盖度普遍偏高,平均偏差为9.92%;但两者相关性较好(r2=0.89).(3)采用Gutman模型ETM+影像、NOAA/AVHRR影像反演植被盖度的结果与数字相机测量结果偏差分别为7.03%、7.83%,ETM+像元分解NOAA像元后得到的植被盖度与数字相机测量结果偏差5.68%.三者与数字相机测量结果的相关系数r2分别为0.78、0.6l和0.76.(4)利用野外实测植被盖度数据直接与NOAA-NDVI影像建立统计模型估算植被盖度的精度较低(r2=0.65),而通过空间分辨率介于两者之间的ETM+影像进行转换后,该精度得到一定的提高(r2=0.80).利用像元分解的方法提高了大尺度植被盖度监测的精度,是利用遥感数据进行尺度转换研究的重要实践.多尺度遥感影像的综合对地观测对大区域上反演植被盖度有很好的促进作用.     

北京部分中心城区1990—2019年三维建筑形态变化特征

城市三维建筑形态影响城市近地表能量平衡、微气候及空气质量。基于多源空间数据(高分辨率Pléiades遥感影像、高分辨率谷歌影像和建筑轮廓数据),构建三维建筑形态指标体系,并基于网格法分析了各三维建筑形态指标的空间敏感性,应用该指标体系评价了1990—2019年北京部分中心城区的三维建筑形态特征及其变化。主要结果如下:(1)整合11个指数构建了一套三维建筑形态指标体系;(2)各指标的核密度分布存在差异;形状指数、三维分形维数、聚集度、邻近度对网格大小敏感,其他指标对网格大小不敏感;(3)1990—2019年建筑面积占比、加权面积建筑高度、三维形状指数、邻近度变化显著,且主要集中在四环两侧及国贸附近。     

Specific gravity as an alternative to creatinine for estimating urine concentration in captive and wild chimpanzee (Pan troglodytes) Samples

The measurement of hormones in urine has become a widely used technique in primatology. Because urine concentration varies according to fluid intake, concentration must be measured in each sample collected, and hormone values are always expressed per unit of concentration. Traditionally, creatinine has been used as a concentration index, but some studies in humans have shown that creatinine varies among populations and even within and between individuals within a population, and that it begins to degrade after just one freeze-thaw cycle. In addition, creatinine measurement is relatively time-consuming and expensive and creates hazardous waste. In this study, we tested the hypothesis that specific gravity, or the ratio of the density of a sample to that of water, is highly correlated with creatinine measurement in urine samples collected from captive chimpanzees at the New Iberia Research Center in Louisiana and wild chimpanzees at the Ngogo study site in the Kibale National Park, Uganda. We found that specific gravity and creatinine were highly correlated in both captive (N=124) and wild (N=13) chimpanzee samples, and that specific gravity measurement was robust to actual and simulated transport conditions and repeated freeze-thaw cycles. We recommend that researchers consider specific gravity measurement as a preferable alternative to creatinine measurement in their studies of primate endocrinology.     

近红外无创伤血糖测量的组织光学基础研究

人体血糖浓度无创伤测量是当今学术界和医学界普遍关注的课题。在分析了血糖浓度无创伤测量的意义、现有的测量方法及其进展后,从组织光学角度分析血糖浓度无创伤测量中包含的研究内容,并根据当前的研究现状,提出血糖浓度无创伤测量所存在的问题。通过组织光学角度对血糖浓度无创伤测量方法的剖析,更加明确血糖测量的研究任务,有望促使其更进一步的发展以及血液中其他成分的无创测量。     

发酵过程中细胞浓度在线检测系统*

利用微机软、硬件技术,设计了一套比浊法细胞浓度在线检测系统,并应用于5L发酵罐中木糖醇发酵过程细胞浓度在线检测。该系统能及时、较准确地反映发酵过程中菌体浓度随时间的变化情况,在规模化生产中具有较强的适用性、通用性,可为实现其它分析仪器的计算机在线检测系统提供值得借鉴的设计思路和实现方法。     

Template synthesis of macrocyclic complexes and their spectroscopic and antibacterial studies

A new series of macrocyclic complexes of type [M(TML)X]X₂, where M = Cr(III), Fe(III), TML is tetradentate macrocyclic ligand, and X = Cl^?, NO₃^?, CH₃COO^?, have been synthesized by condensation of isatin and ethylenediamine in the presence of metal salt. The complexes were synthesized by both conventional and microwave methods. The complexes have been characterized with the help of elemental analysis, conductance measurement, magnetic measurement, and infrared, far infrared, and electronic spectral studies. Molar conductance values indicate them to be 1:2 electrolytes. Electronic spectra along with magnetic moments suggest five-coordinate square pyramidal geometry for these complexes. The complexes were also tested for their in vitro antibacterial activity. Some of the complexes showed satisfactory antibacterial activitiy.     

Blood glucose monitor: an alternative off-line method to measure glucose concentration during fermentations with <Emphasis Type="Italic">Trichoderma reesei</Emphasis>

Two home, blood-glucose monitoring meters, OneTouch Ultra and Ascensia Contour, were used to determine the glucose concentration during fermentations of Trichoderma reesei in both flasks and bioreactors. The results, when compared to those given by the 3,5-dinitrosalicylic acid reducing sugar assay, HPLC and YSI 2700 SELECT Biochemistry analyzer, showed that the glucose meters are a quick, reliable and economical alternative method for frequent glucose concentration measurement during fermentation. For T. reesei fermentations, the OneTouch meter was the more suitable     

Non-destructive measurement of dormant bud respiration rates

The lack of an indicator of the state of bud development during the dormant period has been a major difficulty in studying the effects of winter chilling on subsequent shoot growth and flowering. We considered that respiration rate (R _D ) might provide such an index, so developed a technique for the non-destructive measurement of the R _D of individual dormant buds of kiwifruit (Actinidia deliciosa). A closed configuration gas exchange system was used. The low R _D of dormant buds required the use of an unusually small system volume. As a consequence, it was necessary to modify the conventional closed system so that most of the system volume could be sampled for analysis. Increases in CO₂ concentration during a measurement were determined by injecting gas samples into a stream of air flowing through an infrared gas analyser. The technique was found to be reliable even at R _D as low as 20 pmol s-1. Error analysis showed that under normal operating conditions the coefficient of variation was approximately 3 %. With two operators, measurements could be made at the rate of one bud every four minutes. The ability to make non-destructive measurements has the advantage of enabling us to make sequential measurements on individual buds and monitor subsequent development. The system could be readily adapted to other woody fruit species, providing that gas-tight seals can be established on individual buds. Use of the system is illustrated by measuring the temperature response of the R _D of dormant buds grown under contrasting conditions. All buds showed increasing R _D with increasing temperature in the range 15 to 25 °C. Buds which had grown in the coolest region, where bud break is usually the earliest, had the highest R _D when measured during early spring. This revised version was published online in September 2006 with corrections to the Cover Date.     

A cost-benefit analysis of methods for the determination of biomass concentration in wastewater treatment

The measurement of biomass concentration is important in biological wastewater treatment. This paper compares the accuracy and costs of the traditional volatile suspended solids (VSS) and the proposed suspended organic carbon (SOC) methods. VSS and SOC values of a dilution system were very well correlated (R(2)=0.9995). VSS and SOC of 16 samples were determined, the mean SOC/VSS ratio (0.52, n=16, sigma=0.01) was close to the theoretical value (0.53). For costing analysis, two hypothetical cases were analysed. In case A, it is assumed that 108 samples are analysed annually from two continuous reactors. Case B represents a batch experiment to be carried out in 24 incubated serum bottles. The savings, when using the SOC method, were 11,987 pounds for case A and 90 pounds for case B. This study suggests the use of SOC method as a time saving and lower cost biomass concentration measurement.     

基于近红外光谱实时监测乙醇发酵过程多组分参数

生物量、葡萄糖浓度和乙醇浓度是乙醇发酵过程的重要参数,传统的方法通常对发酵液取样作离线测量,不仅需要采用多种仪器进行测试分析,而且耗时耗力,成为实时过程调控和优化的障碍。文中针对这些重要过程参数提出了一个基于近红外光谱技术的原位实时检测方法。通过采用浸入式近红外光谱仪对发酵溶液进行原位测量,基于多输出最小二乘支持向量机回归(MLS-SVR)方法建立了利用近红外光谱同时分析葡萄糖浓度、生物量和乙醇浓度的多输出预测模型。实验结果表明,该方法能实时准确地检测乙醇发酵过程中的葡萄糖浓度、生物量和乙醇浓度,而且相对于现有的偏最小二乘法(PLS)分别对各组分建模和预测,能明显提高测量准确性和可靠性。     

The dynamics of collagen uncrimping and lateral contraction in tendon and the effect of ionic concentration

Under tensile loading, tendon undergoes a number of unique structural changes that govern its mechanical response. For example, stretching a tendon is known to induce both the progressive “uncrimping” of wavy collagen fibrils and extensive lateral contraction mediated by fluid flow out of the tissue. However, it is not known whether these processes are interdependent. Moreover, the rate-dependence of collagen uncrimping and its contribution to tendon's viscoelastic mechanical properties are unknown. Therefore, the objective of this study was to (a) develop a methodology allowing for simultaneous measurement of crimp, stress, axial strain and lateral contraction in tendon under dynamic loading; (b) determine the interdependence of collagen uncrimping and lateral contraction by testing tendons in different swelling conditions; and (c) assess how the process of collagen uncrimping depends on loading rate. Murine flexor carpi ulnaris (FCU) tendons in varying ionic environments were dynamically stretched to a set strain level and imaged through a plane polariscope with the polarizer and analyzer at a fixed angle. Analysis of the resulting images allowed for direct measurement of the crimp frequency and indirect measurement of the tendon thickness. Our findings demonstrate that collagen uncrimping and lateral contraction can occur independently and interstitial fluid impacts tendon mechanics directly. Furthermore, tensile stress, transverse contraction and degree of collagen uncrimping were all rate-dependent, suggesting that collagen uncrimping plays a role in tendon's dynamic mechanical response. This study is the first to characterize the time-dependence of collagen uncrimping in tendon, and establishes structure–function relationships for healthy tendons that can be used to better understand and assess changes in tendon mechanics after disease or injury.     

Rapid,nondestructive measurement of chlorophyll content in leaves with nonuniform chlorophyll distribution

A practical microcomputerized video image analysis method is described for quantifying leaf chlorophyll content without extraction. Chlorophyll concentration is estimated from densimetric measurements of whole, intact leaves. Direct comparison with conventional extraction measurements on Epipremnum aureum, a variegated species, verified the image analysis technique's accuracy. The inherent advantages with regard to the nondestructive and convenient nature of the measurement, and suitability for leaves with irregular chlorophyll distribution, are discussed.