崇明东滩鸟类栖息地优化区越冬水鸟的栖息地利用及影响因子

阐明水鸟栖息地利用与环境因子的关系有助于制定针对性的水鸟保护对策。本研究在2012~2013年冬季对崇明东滩鸟类栖息地优化区内越冬水鸟的种类、数量以及6种环境因子(植被面积比例、裸地面积比例、水深、地形变异、栖息地结构多样性和干扰)进行调查,以了解水鸟对人工湿地的栖息地利用及其影响因子。野外调查共记录到水鸟24种9 018只,其中优势种为斑嘴鸭(Anas poecilorhyncha)和绿头鸭(A.platyrhynchos);栖息地优化区内水鸟休息的个体数量占总数量的79.2%,这表明优化区是大多数水鸟的休息地,而小(Tachybaptus ruficollis)、白骨顶(Fulica atra)、黑水鸡(Gallinula chloropus)、白琵鹭(Platalea leucorodia)和黑脸琵鹭(P.minor)的觅食个体数量超过60%,说明优化区也为这些鸟类提供了觅食地。逐步回归分析表明,裸地面积比例是影响越冬水鸟种类分布的最主要因子;尽管游禽在地形变异较大、植被面积比例较低的区域数量较多,但在休息时游禽更偏好于裸地面积比例较高的区域,而涉禽休息时偏好于地形变异较大的区域。为增加栖息地优化区内的水鸟多样性,建议在优化区内种植水鸟可食的沉水植物以增加水鸟的食物资源,同时增加裸地面积比例和地形变异程度,更好地为水鸟提供栖息地。     

广东西部云开山自然保护区蕨类植物多样性调查

野外调查和标本鉴定结果表明,云开山自然保护区共有185种蕨类植物,其中10种为广东新分布:中华桫椤(Alsophila costularis)、白桫椤(Sphaeropteris brunoniana)、有刺凤尾蕨(Pteris setulosacostulata)、禾秆亮毛蕨(Acystopteris tenuisecta)、高大短肠蕨(Allantodia muricata)、细裂铁角蕨(Asplenium tenuifolium)、无盖肉刺蕨(Nothoperanema shikokianum)、蓝色鳞毛蕨(Dryopteris polita)、云南舌蕨(Elaphoglossum yunnanense)和黑鳞剑蕨(Loxogramme assimilis)。该地蕨类植物区系主要由亚洲热带亚热带分布和东亚分布成分(各占约37%的种类)构成,以鳞毛蕨科(Dryopteridaceae)、水龙骨科(Polypodiaceae)、金星蕨科(Thelypteridaceae)、蹄盖蕨科(Athyriaceae)和铁角蕨科(Aspleniaceae)的植物最为丰富,包含13种中国特有种但缺乏本地特有成分。垂直分布的统计结果表明,绝大多数植物(143种)生活在海拔900~1300 m的常绿阔叶林下,局限分布于海拔800 m以下的植物有15种,而局限分布于海拔1400~1700 m的植物有23种。该地的珍稀蕨类植物有马尾杉(Phlegmariurus phlegmaria)、华南马尾杉(P. austrosinicu)、薄叶阴地蕨(Sceptridium daucifolium)、小黑桫椤(Gymnosphaera metteniana)、中华桫椤、白桫椤、长柄车前蕨(Antrophyum obovatum)、黑鳞复叶耳蕨(Arachniodes nigrospinosa)、两广鳞毛蕨(Dryopteris liangkwangensis)、云南舌蕨、燕尾蕨(Cheiropleuria bicuspis)、锯蕨(Micropolypodium okuboi)和穴子蕨(Prosaptia urceolaris)。     

骨顶鸡等游禽对不同人为干扰方式的响应

分别于2008年4月至6月和2009 年4月至6月, 采用目标动物取样法在黑龙江省安邦河湿地和大庆龙凤湿地研究了骨顶鸡等水鸟对人为干扰的行为响应。结果表明:骨顶鸡对行人和机动车辆两种干扰的反应距离类似,但耐受程度有所不同,骨顶鸡对机动车辆干扰的耐受性要好于行人干扰。在以游客等行人干扰为主的安邦河湿地,骨顶鸡以及其他游禽对干扰产生行为反应的比例要高于以机动车辆干扰为主的龙凤湿地,说明相对于行人干扰骨顶鸡对机动车辆更容易耐受;在安邦河湿地,骨顶鸡对划船的反应距离以及反应程度要大于人行走,说明骨顶鸡对于侵入性的干扰更为敏感。此外,对凤头(Podiceps cristatus)、黒颈(Podiceps nigricollis)、小(Tachybaptus ruficollis)、黑水鸡(Gallinula chloropus)、红头潜鸭(Aythya ferina)、赤膀鸭(Anas strepera)、绿头鸭(Anas platyrhynchos)、斑嘴鸭(Anas poecilorhyncha)、绿翅鸭(Anas crecca)、白眉鸭(Anas querquedula)、赤颈鸭(Anas penelope)、琵嘴鸭(Anas clypeata)等游禽对人为干扰的反应距离、耐受距离以及遭受干扰时的反应比例进行了研究,结果显示3种对干扰的耐受距离差异不显著,12种鸭类中红头潜鸭对人为干扰的敏感性要小于其他鸭类,斑嘴鸭和绿头鸭则相对敏感。     

干旱胁迫对高山柳和沙棘幼苗光合生理特征的影响

为了解干旱河谷-山地森林交错带植物光合生理特征对干旱胁迫的响应。以交错带两种典型植物高山柳(Salix paraqplesia)和沙棘(Hippophae rhamnoides)为研究对象,研究其在不同程度的干旱胁迫条件下植株气体交换参数的日变化特征。干旱胁迫显著降低了两种植物叶片数、叶面积、叶片生物量、比叶面积、色素含量、净光合速率(Pn)、气孔导度(gs)和气孔限制值(Ls)等与光合生理过程密切相关的叶片指标,但增大了胞间CO₂浓度(Ci)和内禀水分利用效率(WUEi)。植物叶片的气体交换参数(如:Pn和gs)日变化并未完全随着光合有效辐射的增强和温度的升高而增加,全天以11:00最大,"午休"现象明显。相对而言,沙棘在干旱胁迫条件下表现出相对较高的叶面积、Pn、gs和WUEi,具有相对更强的适应干旱环境的能力,而高山柳对干旱胁迫更为敏感。     

假臭草等12种植物对白花鬼针草幼苗的化感作用

用具有化感作用或潜在抑草活性的12种植物的叶片水浸液对白花鬼针草(Bidens alba)幼苗进行处理,对其幼苗的生长 进行研究,以期筛选出对白花鬼针草生长有较强抑制作用的植物种类。结果表明,12种供体植物叶片水浸液(0.05 g DW mL^-1) 均能显著抑制白花鬼针草幼苗的生长(P<0.05),综合化感效应(SE)均为负值(≤-0.2),抑制强度依次为假臭草(Eupatorium catarium)>胜红蓟(Ageratum conyzoides)>海芋(Alocasia macrorrhiza)>水茄(Solanum torvum)>马缨丹(Lantana camara)>薇甘菊(Mikania micrantha)>构树(Broussonetia papyrifera)>南美蟛蜞菊(Wedelia trilobata)>三裂叶薯(Ipomoea triloba)>葛藤(Pueraria lobata)>鸡矢藤(Paederia scandens)>五爪金龙(Ipomoea cairica),其中假臭草叶水浸液浓度仅为0.04 g DW mL^-1时就可以使白花鬼针草死亡。假臭草和胜红蓟的茎水浸液也可以显著抑制白花鬼针草的生长(P<0.05),抑制效果略低于叶水浸液。回归分析表明,假臭草叶水浸液浓度与白花鬼针草的生物量等指标之间有线性回归关系(R²>0.85, P<0.001),随着水浸液浓度的增加,白花鬼针草的生物量等指标下降。防除白花鬼针草时使用假臭草和胜红蓟的茎、叶水浸液, 其有效浓度低且资源丰富,可作为白花鬼针草天然除草剂的主要资源植物。     

干旱胁迫对高山柳和沙棘幼苗光合生理特征的影响

为了解干旱河谷-山地森林交错带植物光合生理特征对干旱胁迫的响应。以交错带两种典型植物高山柳(Salix paraqplesia)和沙棘(Hippophae rhamnoides)为研究对象,研究其在不同程度的干旱胁迫条件下植株气体交换参数的日变化特征。干旱胁迫显著降低了两种植物叶片数、叶面积、叶片生物量、比叶面积、色素含量、净光合速率(Pn)、气孔导度(gs)和气孔限制值(Ls)等与光合生理过程密切相关的叶片指标,但增大了胞间CO₂浓度(Ci)和内禀水分利用效率(WUEi)。植物叶片的气体交换参数(如:Pn和gs)日变化并未完全随着光合有效辐射的增强和温度的升高而增加,全天以11:00最大,"午休"现象明显。相对而言,沙棘在干旱胁迫条件下表现出相对较高的叶面积、Pn、gs和WUEi,具有相对更强的适应干旱环境的能力,而高山柳对干旱胁迫更为敏感。     

红枣贮藏期果面微生物多样性

以2种成熟度不同的红枣(Zizyphus jujuba Mill.)为试验材料在入库前采用保鲜剂处理,未采用保鲜剂处理的红枣为试验对照,研究红枣不同贮藏时期果面微生物多样性。结果表明:红枣贮藏期果面微生物种群中,细菌是优势类群,占微生物总数80%以上,真菌较少;采摘期红枣果面上就携带微生物,真菌优势菌株属于链格孢(Alternaria),其次为镰刀菌(Fusarium)和木霉(Trichoderma),贮藏期优势菌株属于链格孢(Alternaria)、青霉(Penicillium)、木霉(Trichoderma)和镰刀菌(Fusarium),曲霉(Aspergillus)、毛霉(Mucor)和根霉(Rhizopus)次之。红枣贮藏期果面微生物种群动态失衡是导致贮藏病害发生的主要原因,成熟度较高的红枣果面微生物总数、真菌和细菌的数量明显高于成熟度较低的红枣,使用保鲜剂后有效地降低了红枣贮藏期果面微生物的多样性,贮藏时间越长红枣果面微生物的多样性越明显。     

马尾松人工林近自然化改造对植物自然更新及物种多样性的影响

中国人工林面积居世界第一位,而马尾松是中国人工林面积较大的树种之一,广泛分布于中国的亚热带区域。马尾松适应能力强,耐干旱、瘠薄,是南方低山丘陵区群落演替的先锋树种,也是荒山绿化造林的主要树种,马尾松人工林对生态防护、生态治理有着重大的意义。但是,绝大部分马尾松人工林为人工纯林,生态系统比较脆弱,生态服务功能较差。人工林的近自然改造对于增加林地生物多样性,提升人工林的生态服务功能具有重要意义。2005年,对中国林业科学院热带林业试验中心1993年造林的马尾松人工林进行4种不同强度(50%、40%、30%、20%)间伐后,套种大叶栎(Castanopsis fissa)、米老排(Mytilaria laosensis)、润楠(Machilus pingii)、红锥(C. hystrix)4个乡土阔叶树种,各种套种密度皆为120株/hm²。分别于间伐前(2004年)及2010年对群落生物多样性及人工套种树种生态情况进行调查,结果表明:(1)间伐处理后,自然更新至乔木层的物种种类和数量都有显著的增加,600 m²的样方中,物种数由(2.75±2.56)种增加到(11.17±4.32)种,个体数由(5.75±4.31)株增加到(32.17±19.09)株,群落中乔木亚层的优势种变化不大,主要有南酸枣(Choerospondias axillaris)、水锦树(Wendlandia uvariifolia),枫香(Liquidambar formosana)、破布木(Cordia dichotoma)、白背桐(Mallotus paniculatus)等。新增加到乔木层的物种大都为之前群落中灌木层的种类,主要有三桠苦(Evodia lepta)、鸭脚木(Schefflera minutistellata)、白花龙(Styrax faberi)、中平树(Macaranga denticulata)、黄毛榕(Ficus esquiroliana)、华南毛柃(Eurya ciliata)、罗浮柿(Diospyros morrisiana)、猴耳环(Pithecellobium clypearia)、木姜子(Litsea pungens)、毛黄肉楠(Actinodaphne pilosa)等。(2)间伐处理前,600 m²样方中出现的灌草种类数量为(24.63±4.24)种,间伐处理后,600 m²样方中出现的灌草种类数量为(27.58±3.80)种,不同间伐强度处理后林下灌草的优势种与间伐前大致相同,灌木层优势种为三桠苦,草本层优势种为弓果黍(Cyrtococcum patens)。不同间伐强度处理林分间,灌木层和草本层的物种丰富度指数、Shannon-Wiener指数、Simpson指数和Pielou指数均无显著差异,且与间伐前林分也无显著差异。(3)间伐促进了4个乡土树种幼树的生长,随着间伐强度的增加,大叶栎、红锥幼树的高度和胸径显著增长;50%的间伐强度的林分中,阔叶树种幼树的长势要显著好于其他间伐强度,50%的间伐强度最有利于马尾松林下套种的阔叶树种生长。(4)在马尾松林下套种的4个阔叶树种幼树的初期生长有明显差异。总体而言,大叶栎与米老排幼树的早期生长速率要明显高于红锥和润楠。     

峨眉山灰胸薮鹛冬季栖息地特征

对于特有珍稀鸟类的保护而言,了解其对特定栖息地的要求至关重要。灰胸薮鹛(Liocichla omeiensis)是我国西南山地一种特有的画眉科(Timaliidae)珍稀鸟类。2010~2013年冬季,采用样线法和样方法,在四川峨眉山对灰胸薮鹛的冬季栖息地特征进行了调查。沿山间公路、山脊或林中小径布设观察样线。样线共计26条,总长70 km。观察发现,灰胸薮鹛主要在常绿阔叶林林缘地带活动,海拔范围约500~1 300 m。共设置47个利用样方和25个对照样方。χ²检验的结果表明,灰胸薮鹛主要选择阳坡。与对照样方的差异性检验显示,灰胸薮鹛喜好利用海拔较低、乔木数量较少、乔木胸径较小、乔木均高较低、乔木盖度较小、灌木盖度较大、竹子均高较高、竹子盖度较大、草本盖度较大、藤本植物较丰富、植被总盖度较大和距林缘距离较小的生境。逐步判别分析结果表明,灌木盖度、草本盖度、竹子盖度和距林缘距离是区分利用样方与对照样方的关键因子,判别准确率达87.5%。灰胸薮鹛对冬季栖息地的选择主要与食物和隐蔽条件有关。     

昆仑山北坡不同海拔塔里木沙拐枣的光合生理生态特性

在2008年7月25日-8月6日的连续晴天中,选择昆仑山北坡塔里木沙拐枣自然分布区3个海拔高度(2100,2300,2500m),利用便携式光合测定仪LI-6400测定塔里木沙拐枣的光合生理生态特性。结果表明:2100m处塔里木沙拐枣的光补偿点(LCP)和光饱和点(LSP)与2300m,2500m处差异分别达到显著,而3者间的最大净光合速率(P_max)差异均达显著。表观量子效率(AQY)在3个海拔之间差异均不显著,但在2100m处的羧化效率(CE)分别与2300m和2500m处的差异显著。相同海拔下塔里木沙拐枣的暗呼吸速率值(R_day)要高于光呼吸速率值(R_p),且2500m处的暗呼吸速率分别与2100m和2300m处的有显著的差异,2100m处的光呼吸速率分别与2300m和2500m差异显著。3个海拔塔里木沙拐枣的净光合速率(P_n)、蒸腾速率(T_r)和气孔导度(G_s)的日变化均为单峰曲线。随着海拔的升高,塔里木沙拐枣P_n,T_r,G_s和L_s的日均值降低,但光能利用率(LUE)和水分利用效率(WUE)却显著增加。塔里木沙拐枣的P_n与叶温(T_l)、大气温度(T_a)和光照强度(PPFD)具有极显著的正相关关系,与海拔呈显著负相关,与空气相对湿度(RH)和大气CO₂浓度(C_a)之间均不具有显著相关性。T_r与T_a,T_l和PPFD具有极显著的正相关性,与RH之间存在显著的负相关。G_s只与C_a之间呈极显著的负相关。P_n与T_r,L_s,G_s,WUE和V_pdl分别具有极显著的正相关性,与C_i呈极显著的负相关。通过对不同海拔高度塔里木沙拐枣光合生理参数与光、温等生态因子关系的对比分析表明:塔里木沙拐枣对山地荒漠草地自然环境变化的温度和光照有很好的生态适应性。     

湖南省雀形目鸟类新纪录6种

2011年4月~2013年4月,作者在湖南壶瓶山国家级自然保护区进行鸟类多样性调查和种群监测的过程中,拍摄到6种雀形目鸟类,经鉴定为长尾山椒鸟(Pericrocotus ethologus)、灰蓝姬鹟(Ficedula tricolor)、光背地鸫(Zoothera mollissima)、淡绿贝鸟鹛(Pteruthius xanthochlorus)、点胸鸦雀(Paradoxornis guttaticollis)、高山短翅莺(Bradypterus mandelli),均为湖南省鸟类新纪录。     

Ticks collected on birds in the state of São Paulo,Brazil

The present study reports a collection of Amblyomma spp. ticks in birds from several areas of the state of São Paulo, Brazil. A total of 568 tick specimens (404 larvae, 164 nymphs) were collected from 261 bird specimens. From these ticks, 204 (36%) specimens (94 larvae, 110 nymphs) were reared to the adult stage, being identified as Amblyomma longirostre (94 larvae, 90 nymphs), Amblyomma calcaratum (13 nymphs), Amblyomma nodosum (2 nymphs), and Amblyomma cajennense (5 nymphs). Additionally, 39 larvae reared to the nymphal stage and 8 nymphs that died before reaching the adult stage were identified as A. longirostre according to peculiar characters inherent to the nymphal stage of this species: scutum elongate, and hypostome pointed. The remaining 271 larvae and 46 nymphs were identified as Amblyomma sp. Ticks were collected from 51 species of birds distributed in 22 bird families and 6 orders. The order Passeriformes constituted the vast majority of the records, comprising 253 (97%) out of the 261 infested birds. Subadults of A. longirostre were identified from 35 species of Passeriformes, comprising 11 families (Cardinalidae, Dendrocolaptidae, Fringillidae, Furnariidae, Parulidae, Pipridae, Thamnophilidae, Thraupidae, Turdidae, Tyrannidae, and Vireonidae), and from 1 species of a non-passerine bird, a puffbird (Bucconidae). Subadults of A. calcaratum were identified from 5 species of Passeriformes, comprising 5 families (Cardinalinae, Conopophagidae, Pipridae, Thamnophilidae and Turdidae). Subadults of A. nodosum were identified from 2 species of Passeriformes, comprising two bird families (Thamnophilidae and Pipridae). Subadults of A. cajennense were identified from 2 species of non-passerine birds, belonging to 2 different orders (Ciconiiformes: Threskiornithidae, and Gruiformes: Cariamidae). Birds were usually infested by few ticks (mean infestation of 2.2 ticks per bird; range: 1–16). Currently, 82 bird species are known to be infested by immature stages of A. longirostre, with the vast majority [74 (90%)] being Passeriformes. Our results showed that Passeriformes seems to be primary hosts for subadult stages of A. longirostre, A. calcaratum, and A. nodosum. However, arboreal passerine birds seem to be the most important hosts for A. longirostre whereas ground-feeding passerine birds seem to be the most important for both A. calcaratum and A. nodosum. In contrast, the parasitism of birds by subadults of A. cajennense has been restricted to non-passerine birds.     

黄鳝体内寄生胃瘤线虫的染色体核型及G-带分析

采用常规空气干燥法制片,对寄生于黄鳝(Monopterus albus)体腔内的胃瘤线虫(Eustrongylidesignotus)染色体核型进行分析。结果表明:胃瘤线虫体细胞有12条染色体,为二倍体,核型公式为2n=12=10 m+2 sm。由5对常染色体和1对性染色体组成,性别决定模式为XX-XY,其中X、Y和1～4号染色体都为中着丝粒染色体,5号为亚中着丝粒染色体。每对染色体都有特定的G-带带型。     

The origin of bird pollination in Macaronesian Lotus (Loteae, Leguminosae)

The four red-flowered, apparently bird-pollinated Lotus species from the Canary Islands have previously been classified in their own genus, Rhyncholotus. Currently, they are considered as a separate section within genus Lotus, distinct from other herbaceous Canarian congeners which are yellow-flowered and bee-pollinated. A combined analysis of four nuclear regions (including ITS and three homologues of CYCLOIDEA) and three plastid regions (CYB6, matK and trnH-psbA) nests the four bird-pollinated species within a single extant species of bee-pollinated Lotus (L. sessilifolius), in a very extreme example of species paraphyly. Therefore, our data compellingly support the hypothesis that the Macaronesian Lotus species with a bird pollination syndrome are recently derived from entomophilous ancestors. Calibration of the phylogenetic trees using geological age estimates of the most recent islands (La Palma and El Hierro) together with oldest ages of Fuerteventura indicates that bird pollination evolved ca. 1.7 Ma in the Canarian Lotus. These four bird-pollinated species share a most recent common ancestor (MRCA) with L. sessilifolius that dates to about 2.2 Ma. Our analyses further suggest that the evolution of the bird pollination syndrome was likely triggered by the availability of new niches in La Palma and Tenerife as a result of recent volcanic activity.     

Studies on Guizotia abyssinica L. oil: Biodiesel synthesis and process optimization

Guizotia abyssinica seeds, a common bird feedstock, have been explored for the potential of biodiesel synthesis. The oil was extracted from the seeds by solvent extraction and composition of G. abyssinica oil was examined. The reaction parameters for biodiesel synthesis have been optimized. Temperature, oil: methanol ratio, catalyst type and catalyst concentration were found to have significant role on ester conversion. According to this study, the maximum yield of ester (98.7%) can be obtained with optimized sodium methoxide catalyst dosage (0.6%) at an operational temperature of 65 °C. Methyl ester of G. abyssinica oil was also studied for its oxidation stability and low temperature properties. Further, the synthesized product was blended in diesel at 5–20% ratios and evaluated for physico-chemical properties.     

Essential oil composition of Hypericum L. species from Southeastern Serbia and their chemotaxonomy

The essential oils of the aerial parts of nine species of Hypericum (Hypericum barbatum, Hypericum hirsutum, Hypericum linarioides, Hypericum maculatum, Hypericum olympicum, Hypericum perforatum, Hypericum richeri, Hypericum rumeliacum and Hypericum tetrapterum), collected from different locations in Southeast Serbia, were obtained by steam distillation and analyzed by GC and GC–MS. The essential oils investigated were characterized by a high content of non-terpene compounds and a low content of monoterpenes. The contents of non-terpenes, monoterpenes and sesquiterpenes in oils of the species H. barbatum, H. richeri and H. rumeliacum (section Drosocaprium) were similar and these oils were characterized by high contents of fatty acids. The oils of H. hirsutum and H. linarioides (section Taeniocarpium) contained a high percentage of n-nonane. There were similarities in contents of non-terpenes and sesquiterpenes in oils of species that belong to the section Hypericum (H. maculatum, H. perforatum and H. tetrapterum). The oil of H. olympicum differed from others by higher terpene content. A comparison was also carried out of the chemical composition of the essential oils from flower, leaf and stem of H. perforatum and it revealed that the highest concentration of non-terpene compounds was found in the flower and stem oil, while a high concentration of sesquiterpenes was characteristic for leaf oil. There were significant differences in the concentrations of the same compounds in the essential oils of H. maculatum, H. olympicum and H. perforatum, collected in different years from the same location which could be explained by seasonal differences. All data were statistically processed with principal component analysis and cluster analysis. The main conclusion from the above data is that genetic and environmental factors both play a role in determining the composition of essential oils of the Hypericum species studied.     

Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex

The present generic concept of Phoma is broadly defined, with nine sections being recognised based on morphological characters. Teleomorph states of Phoma have been described in the genera Didymella, Leptosphaeria, Pleospora and Mycosphaerella, indicating that Phoma anamorphs represent a polyphyletic group. In an attempt to delineate generic boundaries, representative strains of the various Phoma sections and allied coelomycetous genera were included for study. Sequence data of the 18S nrDNA (SSU) and the 28S nrDNA (LSU) regions of 18 Phoma strains included were compared with those of representative strains of 39 allied anamorph genera, including Ascochyta, Coniothyrium, Deuterophoma, Microsphaeropsis, Pleurophoma, Pyrenochaeta, and 11 teleomorph genera. The type species of the Phoma sections Phoma, Phyllostictoides, Sclerophomella, Macrospora and Peyronellaea grouped in a subclade in the Pleosporales with the type species of Ascochyta and Microsphaeropsis. The new family Didymellaceae is proposed to accommodate these Phoma sections and related anamorph genera. The present study demonstrated that Phoma radicina, the type species of Phoma sect. Paraphoma and Phoma heteromorphospora, the type species of Phoma sect. Heterospora can be assigned to the Phaeosphaeriaceae and Leptosphaeriaceae respectively.     

Multilocus phylogenetic analysis of the genus Aeromonas

A broad multilocus phylogenetic analysis (MLPA) of the representative diversity of a genus offers the opportunity to incorporate concatenated inter-species phylogenies into bacterial systematics. Recent analyses based on single housekeeping genes have provided coherent phylogenies of Aeromonas. However, to date, a multi-gene phylogenetic analysis has never been tackled. In the present study, the intra- and inter-species phylogenetic relationships of 115 strains representing all Aeromonas species described to date were investigated by MLPA. The study included the independent analysis of seven single gene fragments (gyrB, rpoD, recA, dnaJ, gyrA, dnaX, and atpD), and the tree resulting from the concatenated 4705 bp sequence. The phylogenies obtained were consistent with each other, and clustering agreed with the Aeromonas taxonomy recognized to date. The highest clustering robustness was found for the concatenated tree (i.e. all Aeromonas species split into 100% bootstrap clusters). Both possible chronometric distortions and poor resolution encountered when using single-gene analysis were buffered in the concatenated MLPA tree. However, reliable phylogenetic species delineation required an MLPA including several “bona fide” strains representing all described species.     

Relationships between Bambusa species (Poaceae,Bambusoideae) revealed by random amplified polymorphic DNA

RAPD (random amplified polymorphic DNA) molecular markers were used to investigate relationships between a sample of Bambusa species from South Eastern China that have been placed in Bambusa or in several segregate genera, Dendrocalamopsis, Leleba, Lingnania, Neosinocalamus and Sinocalamus by different authors. On the resultant neighbor-joining tree, a thorny core Bambusa cluster was distinguished, as was a Lingnania group, and a cluster of Dendrocalamus species with more capitate inflorescences. However, Leleba was found to be a polyphyletic group in the present study.     

Phylogenetic relationships among Southeast Asian climbing bamboos (Poaceae: Bambusoideae) and the Bambusa complex

A phylogenetic analysis of Bambusa and allies based on the plastid DNA non-coding regions rps16-trnQ, trnC-rpoB, trnH-psbA and trnD-T, and a partial nuclear GBSSI gene, was carried out. This included representatives from all four Bambusa subgenera (including type species), a group of segregate Southeast Asian genera distinctive by their climbing–scrambling culms (Dinochloa, Holttumochloa, Kinabaluchloa, Maclurochloa, Soejatmia, Sphaerobambos), and two other Bambusinae genera (Dendrocalamus, Gigantochloa). The results do not support the present subgeneric classification of Bambusa. The climbing Southeast Asian genera, all of which include species previously placed in Bambusa, are distinct from the “core Bambusa group” (type species and alliance) and the Bambusa complex generally.