拟南芥CK1A基因功能初步研究

利用RT-PCR方法从拟南芥中分离了1个CK基因家族成员CK1A, 该基因的ORF全长2 112 bp, 编码一条703个氨基酸残基的多肽。构建了CK1A基因的植物表达载体35S: GFP: CK1A, 采用基因枪法进行的洋葱表皮细胞GFP瞬时表达实验表明, 荧光信号主要分布在细胞核上, 显示CK1A基因的产物可能在细胞核上发挥作用。半定量RT-PCR分析表明: CK1A基因在花中表达量最大, 其次是茎和根, 在叶和叶柄中表达量较弱。蓝光使CK1A基因的表达升高, 12 h时表达量明显增加, 24 h时表达量下降。酵母双杂交结果显示CK1A蛋白在蓝光下能与CRY2蛋白发生相互作用, 暗示CK1A基因可能参与拟南芥的蓝光信号传导途径。     

拟南芥6个酪蛋白激酶基因的组织表达及其生物信息学分析

利用实时荧光定量PCR技术研究6个酪蛋白激酶基因在不同组织中的表达特性.结果表明:6个基因在各个器官中均有表达,但表达量不同.AT4G14340、AT3G23340、AT1G03930和AT3G03940基因在花中表达量最高,在根中其次,在茎、叶和叶柄中的表达量最低;A T1G04440和AT4G26100基因在根中的...     

拟南芥未知功能基因At3g61870编码蛋白的叶绿体定位研究

利用反向遗传学研究方法对1个预测的拟南芥叶绿体未知功能基因At3g61870编码蛋白进行了亚细胞定位研究.通过克隆At3g61870基因5′端长229 bp的DNA片段,与绿色荧光蛋白(GFP)基因构建重组表达载体pMON530-CP-TP-GFP,经农杆菌介导转化拟南芥.转基因植株的叶肉细胞经激光共聚焦显微镜观察,叶绿素自发荧光与GFP荧光共定位于叶绿体中.结果表明,未知功能基因At3g61870编码的蛋白质为叶绿体蛋白质.     

小麦冰重结晶抑制蛋白基因TaIRI5的克隆及分析

为了明确小麦冰重结晶抑制蛋白基因(TaIRI5)在小麦生长发育过程中的作用,该研究以小麦品种‘北京841’为材料,利用RT-PCR方法克隆TaIRI5基因,并对该基因进行生物信息学分析、组织特异性表达分析、启动子活性分析以及亚细胞定位分析。结果显示:(1)成功克隆到TaIRI5基因,该基因全长1203 bp,开放阅读框为858 bp,编码285个氨基酸,蛋白质分子量为70.7 kD,等电点为5.07,属于疏水性蛋白。(2)实时荧光定量PCR结果显示,TaIRI5基因在小麦的根、茎、叶片、雌蕊、雄蕊、护颖、种子中均有表达,其中根部的相对表达量最高,在雌蕊中表达量最低,表明该基因在小麦的生长发育过程中起重要作用。(3)TaIRI5基因的启动子分析表明,该区域除CAAT-box和TATA-box启动子核心元件外,该序列还包含9个光响应元件和6个激素应答元件及其他元件;利用TaIRI5基因不同长度(498 bp、999 bp、1500 bp)的3个候选启动子,构建了含有GUS基因的pCAMBIA1301融合表达载体;烟草转化实验表明,3个候选启动子都能启动该基因的表达,但表达模式略有差异。(4)成功构建含有GFP基因的融合载体pCAMBIA1300-TaIRI5-GFP,亚细胞定位结果显示,TaIRI5定位于细胞膜上。该研究结果为进一步研究小麦TaIRI5基因功能奠定了基础。     

丹参转录因子SmMYB52的基因克隆、表达分析和亚细胞定位

MYB转录因子家族是植物界最大的转录因子家族之一,在植物生长发育、响应生物、非生物胁迫方面发挥重要作用.本研究分别从gDNA和cDNA水平上克隆得到丹参R2R3-MYB转录因子亚家族第24亚组的基因SmMYB52的全长序列,该基因序列全长1 041 bp,包含2个内含子序列和879 bp完整的CDS(Gen-Bank登录号:KF059406),编码292个氨基酸.运用生物信息学软件对该基因及其编码蛋白进行结构和理化性质分析以及生物信息学分析发现,SmMYB52与拟南芥MYB转录因子AtMYB93亲缘关系最近.利用RT-qPCR测定SmMYB52基因在各器官中的表达,结果显示该基因在根、茎、叶和花中均有表达,根中表达量最高,茎中最低.构建融合表达载体分析SmMYB52蛋白的亚细胞定位,结果显示SmMYB52在细胞核和细胞膜中均有分布.本实验为进一步研究SmMYB52在丹参中的生物学作用提供了科学依据.     

玉米茎特异启动子克隆及其在转基因烟草中的活性分析

从玉米自交系‘综31’基因组中分离了1个茎特异表达启动子,命名为ZmSSP。用ZmSSP替换植物表达载体pCAMBIA3301的CaMV35S启动子,构建了ZmSSP驱动GUS报告基因的重组表达载体pCAMBIA3301-ZmSSP-GUS,并采用农杆菌介导法转化烟草,对转基因烟草营养器官中GUS表达模式进行了分析。结果表明:在烟草中ZmSSP活性低于CaMV35S启动子;不同转基因株系中ZmSSP活性及模式有显著差异;10个转基因株系统计结果表明,GUS表达量最高的营养器官是叶柄,平均是Actin基因表达量的2.71倍;其次是叶片和茎,在根中的GUS表达量最低,平均是Actin基因表达量的29.6%,是叶柄中活性的10.9%。研究认为,ZmSSP是较好的组织特异性启动子,适用于通过植物基因工程技术驱动目的基因进行地上营养器官的性状改良。     

檀香小G蛋白Rac1基因的克隆与功能分析

植物Rac蛋白属于小分子G蛋白ROP家族,广泛参与活性氧(ROS)产生、激素信号转导和组织形态建成。檀香(Santalum album Linn.)是著名的珍贵树种,为半寄生植物,其正常生长需要根部特化的吸器从其他寄主植物摄取营养物质。该研究基于全长转录组数据,采用RT-PCR方法克隆得到了1个檀香Rac基因,命名为SaRac1。结果表明:(1)SaRac1基因全长594 bp,编码197个氨基酸,分子量21.55 kD,理论等电点9.32,为亲水性蛋白。(2)进化分析显示,SaRac1蛋白和拟南芥(Arabidopsis thaliana)AtRac1~6、AtRac9和AtRac11蛋白同属于典型的植物RacⅠ家族蛋白。(3)结构预测显示,该蛋白在N端为保守的G结构域,蛋白C端具有CaaL保守基序。(4)原生质体亚细胞定位试验显示,SaRac1蛋白定位于细胞核和细胞质。(5)组织特异性表达分析显示,SaRac1基因在根和吸器中表达量最高,幼叶和茎中表达量较高,在成熟叶和老叶中表达量较低。(6)用寄生植物吸器诱导因子2,6-二甲氧基对苯醌(DMBQ)处理,发现SaRac1受到DMBQ的强烈诱导,表达量在4 h达到最高。研究推测,SaRac1基因受吸器诱导因子调控进而参与檀香吸器形成过程。     

Kozak序列+4G提高绿色荧光蛋白在HEK293细胞中的表达

构建含不同Kozak序列的绿色荧光蛋白(GFP)基因真核表达载体, 并检测它们在HEK293细胞中的表达差异。 通过设计突变的PCR引物改变目的基因GFP的Kozak序列, +4 位碱基分别为A和G, 且不改变氨基酸编码, 将PCR扩增的GFP片段与载体pcDNA3.1进行酶切、连接、转化、鉴定。成功构建的pHGFP-A, pHGFP-G质粒采用脂质体法转染HEK293细胞, 荧光显微镜下观察绿色荧光表达, 流式细胞术检测目的蛋白GFP的荧光表达阳性率, Western blot检测目的蛋白GFP的表达。构建的两质粒均能有效转染 HEK293细胞, 其中流式细胞术分析显示: pHGFP-A组GFP阳性率约为15%, pHGFP-G组GFP阳性率约为45%; Western blot 显示pHGFP-G的GFP表达量约为pHGFP-A的GFP表达量3.87倍。结果表明, Kozak序列+4G(?3位为嘌呤碱基时)在蛋白表达中发挥重要作用, 可以使绿色荧光蛋白GFP在HEK293细胞中的表达量提高约4倍。     

Kozak序列+4G提高绿色荧光蛋白在HEK293细胞中的表达

构建含不同Kozak序列的绿色荧光蛋白(GFP)基因真核表达载体, 并检测它们在HEK293细胞中的表达差异。 通过设计突变的PCR引物改变目的基因GFP的Kozak序列, +4 位碱基分别为A和G, 且不改变氨基酸编码, 将PCR扩增的GFP片段与载体pcDNA3.1进行酶切、连接、转化、鉴定。成功构建的pHGFP-A, pHGFP-G质粒采用脂质体法转染HEK293细胞, 荧光显微镜下观察绿色荧光表达, 流式细胞术检测目的蛋白GFP的荧光表达阳性率, Western blot检测目的蛋白GFP的表达。构建的两质粒均能有效转染 HEK293细胞, 其中流式细胞术分析显示: pHGFP-A组GFP阳性率约为15%, pHGFP-G组GFP阳性率约为45%; Western blot 显示pHGFP-G的GFP表达量约为pHGFP-A的GFP表达量3.87倍。结果表明, Kozak序列+4G(?3位为嘌呤碱基时)在蛋白表达中发挥重要作用, 可以使绿色荧光蛋白GFP在HEK293细胞中的表达量提高约4倍。     

西伯利亚蓼钙调蛋白基因的克隆及其在盐胁迫下的表达

已从西伯利亚蓼叶中cDNA文库中获得的钙调蛋白EST序列,采用cDNA末端快速扩增（RACE）技术克隆了具有完整编码区的钙调蛋白基因的cDNA序列（GenBank登录号GQ988382）,命名为PsCaM。该基因全长615bp,编码区为450bp,编码149个氨基酸,5＇非翻译区为63bp,3＇非翻译区为102bp。同源性分析表明,该蛋白与其他植物钙调蛋白高度保守,氨基酸同源性高达98%。用实时荧光定量PCR研究3%NaHCO3胁迫下西伯利亚蓼基因表达的结果显示,自然条件下,该基因在叶中表达量最高,地下茎次之,茎中最低;盐胁迫下CaM在西伯利亚蓼的地下茎、茎和叶中均有表达,表达模式不同。     

A functional genomic analysis of Arabidopsis thaliana PP2C clade D

In the reference dicot plant Arabidopsis thaliana, the PP2C family of P-protein phosphatases includes the products of 80 genes that have been separated into ten multi-protein clades plus six singletons. Clade D includes the products of nine genes distributed among three chromosomes (APD1, At3g12620; APD2, At3g17090; APD3, At3g51370; APD4, At3g55050; APD5, At4g33920; APD6, At4g38520; APD7, At5g02760; APD8, At5g06750; and APD9, At5g66080). As part of a functional genomics analysis of protein phosphorylation, we retrieved expression data from public databases and determined the subcellular protein localization of the members of clade D. While the nine proteins have been grouped together based upon primary sequence alignments, we observed no obvious common patterns in expression or localization. We found chimera with the GFP associated with the nucleus, plasma membrane, the endomembrane system, and mitochondria in transgenic plants.     

Use of green fluorescent protein fusions to analyse the N- and C-terminal signal peptides of GPI-anchored cell wall proteins in Candida albicans

Glycophosphatidylinositol (GPI)-anchored proteins account for 26-35% of the Candida albicans cell wall. To understand the signals that regulate these proteins' cell surface localization, green fluorescent protein (GFP) was fused to the N- and C-termini of the C. albicans cell wall proteins (CWPs) Hwp1p, Als3p and Rbt5p. C. albicans expressing all three fusion proteins were fluorescent at the cell surface. GFP was released from membrane fractions by PI-PLC and from cell walls by beta-glucanase, which implied that GFP was GPI-anchored to the plasma membrane and then covalently attached to cell wall glucans. Twenty and 25 amino acids, respectively, from the N- and C-termini of Hwp1p were sufficient to target GFP to the cell surface. C-terminal substitutions that are permitted by the omega rules (G613D, G613N, G613S, G613A, G615S) did not interfere with GFP localization, whereas some non-permitted substitutions (G613E, G613Q, G613R, G613T and G615Q) caused GFP to accumulate in intracellular ER-like structures and others (G615C, G613N/G615C and G613D/G615C) did not. These results imply that (i) GFP fusions can be used to analyse the N- and C-terminal signal peptides of GPI-anchored CWPs, (ii) the omega amino acid in Hwp1p is G613, and (iii) C can function at the omega+2 position in C. albicans GPI-anchored proteins.     

小鼠白蛋白启动子的组织特异性功能研究

以绿色荧光蛋白(GFP)基因作为报告基因,通过对比小鼠白蛋白启动子在不同来源细胞系中启动HGFP基因的转录活性,对小鼠白蛋白启动子的组织特异性进行了研究。结果发现,小鼠白蛋白启动子在小鼠肝癌细胞系Hepa 1—6和人肝癌细胞系：HepG2均有很强的转录起始功能,荧光显微镜下可以观察到IGFP表达。Hepa 1—6细胞在转染早期的48h内,CMV的启动子和增强子序列是小鼠白蛋白启动子转录活性的4倍。G418加压筛选2周后,CMV的启动子的转录活性下降到只有小鼠白蛋白启动子活性的1／2。转染人肝癌细胞系HepG2 2周后,荧光显微镜下可以观察到GFP表达。其他的细胞如中华仓鼠卵巢细胞系CHO和人肺癌细胞系PLA 801中转染的小鼠白蛋白启动子不能启动GFP的表达,而对照CMV启动子控制下的GFP基因可在CHO和PLA 801中表达。以上结果说明,小鼠白蛋白启动子仅在肝脏来源的细胞中可以起始下游基因的转录,在其他组织来源的细胞中不能起始转录,这表明小鼠白蛋白启动子具有肝脏组织特异的转录活性,但没有种属特异性。     

SV40PolyA顺式活化基因元件中不完整茎环结构的发现和序列研究

研究室的前期工作发现,Alu串连序列插入pEGFP-C1质粒的GFP基因下游,瞬时转染HeLa细胞抑制GFP基因表达,2F2R(来自SV40PolyA反序5′端的第2个60 bp)插入GFP和Alu串连序列之间可以解除Alu序列对GFP基因的抑制作用。文章通过删减2F2R发现,45R(2F2R 5′端的45 bp)、30R和22R可以活化基因,且二串连体活化基因作用高于单体。Secloop(2F2R近中部的22 bp)和Poly4(2F2R 3′端的30 bp)不能活化基因。30R与Poly4用9碱基连接形成30R-Poly4,其活化基因作用低于2F2R,两个22R之间连接碱基数对活化GFP基因作用没有明显的影响。22R(5′-GTGAAAAAAATGCTTTATTTGT-3′)含有不完整的回文序列,可以形成不完整的茎环结构,包括一个3碱基loop、3 bp第一茎、2碱基泡和3 bp第二茎。改变22R茎环结构的碱基突变明显影响其活化GFP基因的作用,过多互补和过少互补的茎环结构均不利于活化基因,提示适当的不完整茎环结构与活化基因有关。     

两个拟南芥未知功能蛋白的亚细胞定位研究

蛋白质的亚细胞定位对于深入了解该蛋白质所行使的生理功能具有重要意义。经生物信息学预测,两个拟南芥未知功能基因At4g16410与Atl gI8060编码蛋白含有叶绿体定位信息。我们分别克隆了这两个基因5’端长199bp与220bp的DNA片段,与绿色荧光蛋白（GFP）基因构建重组表达载体pMON530-cTP1-GFP与pMON530-cTP2-GFP,经农杆菌介导转化拟南芥。两种转基因植株经激光共聚焦显微镜观察,GFP荧光仅在叶绿体中观察到,表明所克隆的两段DNA序列编码的多肽能够将At4gl6410与Atlgl8060编码蛋白质引导进入叶绿体,确定这两个蛋白质均为叶绿体蛋白质。     

Analysis of the function of the photoreceptors phytochrome B and phytochrome D in Nicotiana plumbaginifolia and Arabidopsis thaliana

To investigate the mechanism of phytochrome action in vivo, NtPHYB, AtPHYB and phyD:green fluorescent protein (GFP) were overexpressed in Nicotiana plumbaginifolia and Arabidopsis thaliana. The expression of 35S:NtPHYB:GFP and 35S:AtPHYB:GFP complemented the tobacco hgl2 and Arabidopsis phyB-9 mutations, whereas the 35S:AtPHYD:GFP only rescued the hgl2 mutant. All three fusion proteins are transported into the nucleus in all genetic backgrounds. These data indicate that AtPHYD:GFP is biologically active and functions as the main red light receptor in transgenic tobacco, and establish an experimental system for the functional analysis of this elusive photoreceptor in vivo.     

Improved imaging of actin filaments in transgenic Arabidopsis plants expressing a green fluorescent protein fusion to the C- and N-termini of the fimbrin actin-binding domain 2

The role of the actin cytoskeleton in plant development is intimately linked to its dynamic behavior. Therefore it is essential to continue refining methods for studying actin organization in living plant cells. The discovery of green fluorescent protein (GFP) has popularized the use of translational fusions of GFP with actin filament (F-actin) side-binding proteins to visualize in vivo actin organization in plants. The most recent of these live cell F-actin reporters are GFP fusions to the actin-binding domain 2 (ABD2) of Arabidopsis fimbrin 1 (ABD2-GFP). To improve ABD2-GFP fluorescence for enhanced in vivo F-actin imaging, transgenic Arabidopsis plants were generated expressing a construct with GFP fused to both the C- and N-termini of ABD2 under the control of the CaMV 35S promoter (35S::GFP-ABD2-GFP). The 35S::GFP-ABD2-GFP lines had significantly increased fluorescence compared with the original 35S::ABD2-GFP lines. The enhanced fluorescence of the 35S::GFP-ABD2-GFP-expressing lines allowed the acquisition of highly resolved images of F-actin in different plant organs and stages of development because of the reduced confocal microscope excitation settings needed for data collection. This simple modification to the ABD2-GFP construct presents an important tool for studying actin function during plant development.     

Differential tissue-specific response to sulfate and methionine of a soybean seed storage protein promoter region in transgenic Arabidopsis

Expression of the gene encoding the beta subunit of beta-conglycinin, a major soybean seed storage protein, is upregulated by sulfur deficiency and downregulated by methionine (Met). The tissue-specificity of these regulatory mechanisms was studied using a sulfate-responsive region (beta(SR)) from the beta subunit gene promoter. Transgenic Arabidopsis thaliana lines were generated carrying a green fluorescent protein (GFP) reporter gene under control of the cauliflower mosaic virus 35S RNA promoter with a tandem repeat of the beta(SR) element, referred to as the P35S::beta(SR)x3: GFP transgene. Upregulation of P35S::beta(SR)x3:GFP by sulfur deficiency was strongest in leaf margins, where symptoms of sulfur deficiency first appear. P35S::beta(SR)x3:GFP was also upregulated at 2 d after a medium shift from sulfur-sufficient to sulfur-deficient conditions, suggesting that the chimeric promoter is an efficient indicator of sulfur nutritional status. Analysis of transgene expression in a Met-overaccumulating mto1-1 mutation background revealed that the beta(SR) region carries sufficient information for downregulation of promoter activity by Met in developing seeds, but not in young rosettes. Comparisons with another transgenic line, in which the full-length beta promoter is active in non-seed tissues, also suggested that at least two separate tissue-specific mechanisms exist for the downregulation of the beta promoter by Met.