DBP降解菌株XJ1的分离鉴定及其降解特性

目的：从湘江底泥筛选分离出能够高效降解邻苯二甲酸二丁酯（DBP）的菌株,对其进行鉴定和降解特性研究。方法：采用DBP为唯一碳源和能源的无机盐培养基,通过富集培养、平板划线分离得到一株优势菌,编号为XJ1。采用形态学、生理生化、（G＋C）mol%和16SrDNA序列分析进行鉴定。采用高效液相色谱测定菌株XJ1在摇瓶中对DBP的降解能力,并进行DBP代谢产物的分析和底物广谱性测试。结果：鉴定该菌株为Sphingomonsasp.。摇瓶实验结果表明：最佳降解条件为温度35℃,初始pH为7.0,转速150r/min;在最佳的降解条件下,40h之内DBP可完全降解。HPLC-UV检测出的中间代谢产物为邻苯二甲酸单丁酯（MBP）和邻苯二甲酸（PA）。底物广谱性实验表明菌株XJ1能够利用邻苯二甲酸二甲酯、邻苯二甲酸二乙酯等邻苯二甲酸酯类化合物。结论：菌株XJ1对DBP具有高效的降解能力,在处理含有邻苯二甲酸酯类化合物污染的生物修复方面具有独特的应用潜力。     

苹果根际自毒物质降解菌的筛选鉴定及降解特性研究

【目的】从苹果根际土壤筛选苹果根系自毒物质降解细菌,并探究分离菌株对根皮苷、邻苯二甲酸、对羟基苯甲酸以及焦性没食子酸的降解能力。【方法】分别采用邻苯二甲酸、焦性没食子酸为唯一碳源富集并筛选其降解菌株。通过对分离菌株的生理生化特征测定及16S r RNA基因序列分析,采用MEGA 5构建系统发育树,进行菌株鉴定。采用紫外分光光度法和高效液相色谱法测定分离菌株对4种自毒物质的降解能力。【结果】共分离5株有降解能力的细菌,编号为BL1、BL2、BL3、BJ1和BJ2,经鉴定BL1为钩虫贪铜菌Cupriavidus necator,BL2为生脂固氮螺菌Azospirillum lipoferum,BL3为氧化烃微杆菌Microbacterium hydrocarbonoxydans,BJ1为Paenibacillus phyllosphaerae,BJ2为Ochrobactrum cytisi。BL1、BL2、BL3菌株对邻苯二甲酸、对羟基苯甲酸、根皮苷、焦性没食子酸的降解率均高于50%。其中BL2菌株的降解效果最好,分别达到66%、72%、84%和84%。【结论】首次发现钩虫贪铜菌、生脂固氮螺菌和氧化烃微杆菌对4种自毒物质均具有很好的降解能力,对缓解自毒物质引起的连作障碍具有潜在的应用价值。     

一株蒽降解细菌的分离及降解特性研究

【目的】从盐碱土壤中筛选蒽降解菌株并分析其降解特性。【方法】采用极度稀释结果流式细胞检测法筛选分离纯化菌株,通过16S rRNA基因序列分析对菌株进行初步鉴定,采用气质联用仪(GC-MS)分析蒽的降解特性。【结果】从盐碱土壤中筛选出一株高效蒽降解菌株。经过16S rRNA基因序列分析,鉴定该菌株为Demequina salsinemorus BJ1。菌株可以利用蒽作为唯一碳源生长,降解率可达92%。在一定浓度范围内,随着蒽浓度的降低,细菌生长速率变快,降解率升高。添加外加碳源后,细菌生长速率明显变快,而对蒽降解率变低。对萃取中间代谢产物的质谱分析表明,降解蒽的中间代谢产物主要有9,10-anthracenedione (9,10-蒽醌)和Phthalic acid (邻苯二甲酸)等,说明它可能通过邻苯二甲酸途径降解蒽。【结论】筛选得到一株新的耐盐碱蒽降解菌,该菌降解效率高,对修复石油污染的土壤有一定的现实意义。     

微小杆菌(Exiguobacterium sp.)对肉桂酸降解行为

【目的】为有效缓解自毒物质肉桂酸对西瓜等作物生长的危害,从宁夏中卫硒砂瓜连作土壤中分离筛选得到一株高效降解肉桂酸的菌株,研究其基本降解特性。【方法】分离筛选得到一株能有效利用肉桂酸生长的菌株,采用16S r RNA基因序列分析进行菌株鉴定,运用高效液相色谱法和西瓜幼苗生长毒性实验检测降解特性。【结果】从多年西瓜连作土壤中筛选得到一株高效降解肉桂酸的细菌R30,鉴定为Exiguobacterium sp.,其96 h内对肉桂酸的降解率可达99%以上,最适降解温度和p H分别为30°C、p H 7.0。除肉桂酸外,该菌也能够高效降解香豆酸、阿魏酸、苯甲酸等其他酚酸类物质,表现出一定的底物广谱性;检测96 h降解液对西瓜种子萌发直至幼苗生长阶段的影响表明,该菌株可有效缓解肉桂酸对西瓜幼苗的生长抑制作用。【结论】菌株R30在肉桂酸、香豆酸、阿魏酸、苯甲酸等酚酸类物质导致的农作物连作障碍治理领域具有潜在的开发应用价值。     

木质素降解菌株的分离及其降解玉米秸秆过程中产酶特点

【目的】筛选高效降解木质素的菌株,并研究其以玉米秸秆为底物时木素降解酶活性。【方法】本研究以愈创木酚培养基和苯胺蓝培养基从吉林省不同经纬度的自然朽木及腐朽玉米秸秆土壤样品中分离、筛选得到高效降解木质素的菌株,并对其形态学鉴定,通过ITS序列分析构建系统发育树,分析菌株的分类地位。通过秸秆固体发酵过程产生的胞外木质素酶的活性分析,选出高效秸秆降解菌。【结果】筛选出1株高效降解秸秆的真菌,对其进行形态学特征和ITS序列分析,命名为白囊耙齿菌W2(Irpex lacteus W2)。该菌株在4–8 d内产生的锰过氧化物酶(Manganese peroxidase)呈上升趋势,并且在8 d达到峰值86.31 U/mL,与黄孢原毛平革菌(Phanerochaete chrysosporium)的最高酶活力45.86 U/mL相比,高出了88.20%(P0.01);该菌株的漆酶(Laccase)活力8 d时达到20.60 U/mL,比对照高40.76%(P0.05)。【结论】本研究分离到一株具有较强降解秸秆能力的真菌,初步鉴定为Irpex lacteus W2,具有较强的降解秸秆能力,其降解秸秆过程中产生较高的锰过氧化物酶与漆酶活力。     

一株DMP降解菌的分离鉴定及其降解特性

从山东省潍坊市污染河流底泥中筛选到1株能够以酞酸酯(Phthalic acid esters, PAEs)为唯一碳源和能源生长的微生物, 命名为JDC-3, 根据形态学观察、生理生化指标测定和分子生物学鉴定结果, 将该菌株初步鉴定为戴尔福特菌属(Delftia sp.), 以一对简并引物, 首次在该属中扩增出编码邻苯二甲酸双加氧酶的基因片段。同时以邻苯二甲酸二甲酯(Dimethyl phthalate, DMP)为目标测试物, 利用高效液相色谱(HPLC)测定了JDC-3的降解性能, 得出该菌对DMP降解的最佳条件为: pH 7.0~8.0、温度30°C~35°C; 在不同DMP初始浓度下研究了该菌的降解动力学, 结果表明当浓度低于300 mg/L时的降解动力学方程为ln C = - 0.06837 t + A, 半衰期为12.48 h, 当初始浓度不断增加, DMP对JDC-3的抑制能力增强, JDC-3对DMP的降解速率不断下降, 半衰期增大。     

高效石油降解菌群的构建及对芳香烃化合物萘的协同降解性能

【背景】石油作为一类混杂有机化合物,一旦产生污染就会对人类和环境造成严重的危害。【目的】从新疆石油污染土壤中分离筛选石油降解菌,为石油污染土壤的生物修复提供数据支持及技术参考。【方法】以石油为唯一碳源,通过富集培养、筛选分离得到123株单菌,根据菌落形态挑选出30个不同形态菌株,通过16S rRNA基因序列确定其种属,构建系统发育树;通过原油降解实验筛选出高效石油降解菌,以芳香烃的标志化合物萘为唯一碳源筛选出高效降解菌株,并分别筛选可降解水杨酸、邻苯二酚的菌株。【结果】分离筛选出5株高效石油降解菌,降解率高于85%;萘、水杨酸和邻苯二酚降解菌株各获得一株,将3种菌株按照1:1:1的接种比例对萘进行降解,萘的降解率从单菌60.74%提升到89.40%,菌株间的分工协作可以提高有机物的降解效率。【结论】筛选得到的菌株丰富了石油降解微生物菌种库,不同微生物菌株之间的分工协作为石油污染物的降解提供了新思路,为进一步研究石油污染治理提供参考。     

苯胺降解菌的筛选、降解特性及其发酵优化

【背景】近年来,苯胺类化合物加重了生态环境的污染,而生物法处理苯胺类废水具有较大发展潜力与广阔的应用前景。【目的】从长期受苯胺类化合物污染的活性污泥中分离获得一株能高效降解苯胺的菌株,优化其培养基及降解条件,为苯胺生物修复提供菌株与基因资源。【方法】采用平板法从富集驯化的菌株中筛选出以苯胺为唯一碳氮源和能源的高效降解菌,通过16S rRNA基因测序鉴定菌种,利用单因素筛选实验对降解条件进行优化,通过正交试验优化培养条件。【结果】筛选到一株苯胺降解菌BA-6,经鉴定为微杆菌属(Microbacterium)。菌株BA-6对初始浓度为600mg/L苯胺的日降解率可达98%以上。其高效降解的温度范围是30–37℃,pH范围是6.5–7.5。底物利用实验表明,菌株BA-6具有降解多种苯胺类化合物的能力。发酵培养基优化实验获得一种发酵培养基,活菌量高达3.06×10¹⁰CFU/mL。【结论】苯胺降解菌BA-6对苯胺有较强的降解能力和环境调节能力,在修复苯胺类化合物的生态污染方面有一定的应用前景。     

蚯触圈源啶虫脒降解菌D35的分离鉴定及其降解条件优化

【背景】啶虫脒等新烟碱类杀虫剂的残留易对非靶标生物造成伤害,投加高效降解细菌进行生物强化,可促进其快速降解。【目的】从蚯触圈中分离筛选啶虫脒降解菌并优化其降解条件,提高降解效率。【方法】制备蚯触圈基质富集筛选降解菌;通过生理生化特征和16S rRNA基因序列分析对其进行鉴定;利用单因素筛选、Plackett-Burman试验、最陡爬坡试验及Box-Behnken design试验优化菌株降解条件。【结果】分离得到1株啶虫脒降解菌D35,可在72 h内降解55.46%初始浓度为50 mg/L的啶虫脒,将其鉴定为一株假单胞菌(Pseudomonas sp.)。优化得到菌株降解啶虫脒的最佳环境条件为：胰蛋白胨10.19 g/L、温度为30℃、接种量为5.24%,pH 7.0、初始农药浓度50 mg/L,在此条件下72 h内菌株降解率为80.21%,较未优化前提高了24.75%。【结论】本研究对分离筛选新烟碱类杀虫剂降解菌的方法进行了探索,获得的菌株D35可高效降解啶虫脒,为快速消除环境中啶虫脒污染提供了新的微生物资源。     

阿特拉津降解菌株AD111的分离鉴定及其降解特性

【背景】玉豆轮作过程中,玉米田中长残留除草剂阿特拉津易对下茬大豆作物产生不良影响。【目的】从黑龙江省安达市的农田土筛选一株能适应该土壤环境生长的阿特拉津降解菌并研究其降解特性。【方法】利用富集培养法,分离、筛选一株阿特拉津高效降解菌并结合外观形态、生理生化及16SrRNA基因序列测定对其进行鉴定,通过单一变量法设置不同的碳源、pH、温度和阿特拉津浓度,研究降解菌株最佳发酵及降解条件。【结果】得到一株在BSM-G中能够以阿特拉津为唯一氮源生长的高效阿特拉津降解菌AD111,鉴定为马德普拉塔无色小杆菌(Achromobacter marplatensis)。菌株AD111降解阿特拉津的最适温度为35℃,最适pH为8.0,最佳碳源为蔗糖,24 h内对浓度为50 mg/L的阿特拉津降解率达到99.7%,对300 mg/L的阿特拉津降解率达到81.9%。【结论】降解菌AD111具有较好的环境适应及阿特拉津降解能力,为解决黑龙江偏碱土壤中阿特拉津残留提供了良好的候选菌株。     

一株高效降解芘的细菌分离、鉴定及其降解效果

摘要：【目的】获得高效降解高分子量多环芳烃的细菌,并研究其对多环芳烃的降解能力。【方法】利用富集培养和芘升华平板方法,从焦化厂污染土壤中分离多环芳烃降解细菌,对分离菌株通过形态特征、16S rRNA基因和gyrb基因序列相似性分析进行鉴定,并研究该菌对高分子量多环芳烃（HMW-PAHs）的降解效果。【结果】筛选到一株能以芘、苯并蒽、屈、苯并芘、茚并芘、苯并苝、荧恩为碳源和能源生长并降解这些底物的菌株HBS1,该菌株的16S rRNA基因和gyrb基因序列与Gordonia amicalis的相应基因的相似     

具杀线虫活性植物内生细菌的筛选和活性产物

【目的】植物寄生线虫是危害植物的重要病原物,为了筛选到能在植物体内稳定定殖并且对植物寄生线虫具有较高杀线虫活性的植物内生细菌生防菌。【方法】以松材线虫为靶标,用直接触杀法进行筛选。对高活性菌株采用正交实验优化发酵条件,测定发酵液杀线虫活性的稳定性,并对菌株进行鉴定。【结果】从6种植物中分离筛选出13株对松材线虫具有较高杀线虫活性的植物内生细菌菌株,这些菌株的发酵上清液对松材线虫处理24h杀线虫率均达到了100%;其中BCM2、SZ5、CCM7和DP1这4个菌株的杀线虫活性较高,发酵上清液稀释3倍处理24h杀线虫率均达到95%以上,DP1和SZ5菌株达到了100%;并发现部分菌株发酵液能使线虫虫体发生渗漏或消解。发酵条件优化后能使发酵液杀线虫效果提高4倍。4株高活性菌株产生的杀线虫物质均对蛋白酶稳定、耐热不耐酸碱且长时间保藏活性不下降。经过鉴定DP1和CCM7是枯草芽孢杆菌(Bacillus subtilis),BCM2和SZ5是蜡样芽孢杆菌(Bacillus cereus)。【结论】经济作物体内存在一定数量的能产生杀线虫活性物质的内生细菌,其中一些细菌产生的杀线虫物质具有较强的稳定性。认为杀线虫活性的植物内生细菌具有很大的生防潜力。     

一株邻苯二甲酸二丁酯降解菌的筛选及其降解特性

【目的】从自然环境中筛选邻苯二甲酸二丁酯(Dibutyl phthalate,DBP)降解能力较强的微生物,并研究其降解特性和代谢途径。【方法】从杭州市河道污水出口的淤泥中筛选到DBP降解菌ZJUTW,对其进行形态、生理生化特征、16SrRNA基因序列分析,考察该菌株对DBP的降解特性,并用GC-MS分析降解中间产物。【结果】该菌株经鉴定为Arthrobacter sp.,降解DBP的最适温度和最适pH值分别为30°C和7.0-8.0,可降解多种邻苯二甲酸酯类化合物;当DBP浓度为800 mg/L时,半衰期为10.47 h;菌株的休止细胞(OD_(600)=1.2)可在20 h内将1 200 mg/L的DBP完全降解。利用GC-MS进行中间产物分析,该菌株可通过酯交换方式起始DBP的降解。【结论】Arthrobacter sp.ZJUTW对DBP有较强的降解能力和较高的耐受性,具有潜在的应用前景。     

Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in <Emphasis Type="Italic">Terrabacter</Emphasis> sp. strain DBF63

Phthalate is a metabolic intermediate of the pathway of fluorene (FN) degradation via angular dioxygenation. A gene cluster responsible for the conversion of phthalate to protocatechuate was cloned from the dibenzofuran (DF)- and FN-degrading bacterium Terrabacter sp. strain DBF63 and sequenced. The genes encoding seven catabolic enzymes, oxygenase large subunit of phthalate 3,4-dioxygenase (phtA1), oxygenase small subunit of phthalate 3,4-dioxygenase (phtA2), cis-3,4-dihydroxy-3,4-dihydrophthalate dehydrogenase (phtB), [3Fe-4S] or [4Fe-4S] type of ferredoxin (phtA3), ferredoxin reductase (phtA4), 3,4-dihydroxyphthalate decarboxylase (phtC) and putative regulatory protein (phtR), were found in the upstream region of the angular dioxygenase gene (dbfA1A2), encoded in this order. Escherichia coli carrying phtA1A2BA3A4 genes converted phthalate to 3,4-dihydroxyphthalate, and the 3,4-dihydroxyphthalate decarboxylase activity by E. coli cells carrying phtC was finally detected with the introduction of a Shine-Dalgarno sequence in the upstream region of its initiation codon. Homology analysis on the upstream region of the pht gene cluster revealed that there was an insertion sequence (IS) (ISTesp2; ORF14 and its flanking region), part of which was almost 100% identical to the orf1 and its flanking region adjacent to the extradiol dioxygenase gene ( bphC1) involved in the DF degradation of Terrabacter sp. strain DPO360 [Schmid et al. (1997) J Bacteriol 179:53-62]. This suggests that ISTesp2 plays a role in the metabolism of aromatic compounds in Terrabacter sp. strains DBF63 and DPO360.     

Mineralization of the cyclic nitramine explosive hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia and Williamsia spp

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a cyclic nitroamine explosive that is a major component in many military high-explosive formulations. In this study, two aerobic bacteria that are capable of using RDX as the sole source of carbon and nitrogen to support their growth were isolated from surface soil. These bacterial strains were identified by their fatty acid profiles and 16S ribosomal gene sequences as Williamsia sp. KTR4 and Gordonia sp. KTR9. The physiology of each strain was characterized with respect to the rates of RDX degradation and [U-14C]RDX mineralization when RDX was supplied as a sole carbon and nitrogen source in the presence and absence of competing carbon and nitrogen sources. Strains KTR4 and KTR9 degraded 180 microM RDX within 72 h when RDX served as the only added carbon and nitrogen source while growing to total protein concentrations of 18.6 and 16.5 microg/ml, respectively. Mineralization of [U-14C]RDX to 14CO2 was 30% by strain KTR4 and 27% by KTR9 when RDX was the only added source of carbon and nitrogen. The addition of (NH4)2SO4- greatly inhibited KTR9's degradation of RDX but had little effect on that of KTR4. These are the first two pure bacterial cultures isolated that are able to use RDX as a sole carbon and nitrogen source. These two genera possess different physiologies with respect to RDX mineralization, and each can serve as a useful microbiological model for the study of RDX biodegradation with regard to physiology, biochemistry, and genetics.     

炔草酯降解菌Sphingopyxis sp. WP68的分离鉴定与降解特性

【背景】炔草酯可以高效防除麦田恶性杂草,但炔草酯的生产和使用也对环境造成了破坏,对动物和人类健康造成了威胁。【目的】分离筛选炔草酯高效降解菌株,研究其降解特性,为炔草酯污染生物修复提供优良菌种资源。【方法】采集农药厂活性污泥样品,通过富集培养和含有炔草酯的LB培养基进行炔草酯降解菌株的分离,通过形态和生理生化特性以及16S rRNA基因序列分析确定其分类学地位,通过单因素试验从温度、pH、接种量和底物浓度等方面考察菌株对炔草酯的降解特性,并利用UPLC-MS分析降解产物。【结果】筛选出一株炔草酯高效降解菌株WP68,经鉴定为鞘氨醇盒菌(Sphingopyxis sp.),该菌株在37°C和pH值为8.0时,10 h内可将200 mg/L的炔草酯降解98.26%。利用UPLC-MS鉴定菌株WP68降解炔草酯的产物为炔草酸。确定了该菌株降解炔草酯的最适温度、pH值、接种量、底物浓度分别是37°C、8.0、5%、200mg/L。菌株WP68还能降解氰氟草酯和精喹禾灵。【结论】Sphingopyxis sp. WP68对炔草酯有较强的降解能力和较高耐受性,在炔草酯污染土壤修复中具有潜在的应用前景。     

一株来自大西洋表层海水的烷烃降解菌Gordonia sp. S14-10的分离鉴定及其降解相关特性的分析

摘要：【目的】本研究的目的是从大西洋表层海水分离筛选新的烷烃降解菌,了解其降解基因及降解特性,为海洋石油污染的生物治理提供材料。【方法】以柴油与原油作为混合碳源从大西洋表层海水样品中富集、并分离筛选出降解能力较强的烷烃降解菌。根据16S rRNA基因和其看家基因secA1序列确定其系统进化地位。分析了烷烃降解范围、表面活性剂产生能力及其他生理生化特性;利用已报道的兼并引物进行了烷烃羟化酶基因的PCR扩增及系统进化分析。【结果】分离筛选得到1株能够降解C10?C36直链烷烃的菌株S14-10。经16S rR     

Isolation and application of Gordonia sp. JC11 for removal of boat lubricants

Boat lubricants are continuously released into the marine environment and thereby cause chronic oil pollution. This study aims to isolate lubricant-degrading microorganisms from Thai coastal areas as well as to apply a selected strain for removal of boat lubricants. Ten microorganisms in the genera of Gordonia, Microbacterium, Acinetobacter, Pseudomonas, Brucella, Enterococcus and Candida were initially isolated by crude oil enrichment culture techniques. The lubricant-removal activity of these isolates was investigated with mineral-based lubricants that had been manufactured for the 4-stroke diesel engines of fishing boats. Gordonia sp. JC11, the most effective strain was able to degrade 25-55% of 1,000 mg L(-1) total hydrocarbons in six tested lubricants, while only 0-15% of the lubricants was abiotically removed. The bacterium had many characteristics that promoted lubricant degradation such as hydrocarbon utilization ability, emulsification activity and cell surface hydrophobicity. For bioaugmentation treatment of lubricant contaminated seawater, the inoculum of Gordonia sp. JC11 was prepared by immobilizing the bacterium on polyurethane foam (PUF). PUF-immobilized Gordonia sp. JC11 was able to remove 42-56% of 100-1,000 mg L(-1) waste lubricant No. 2 within 5 days. This lubricant removal efficiency was higher than those of free cells and PUF without bacterial cells. The bioaugmentation treatment significantly increased the number of lubricant-degrading microorganisms in the fishery port seawater microcosm and resulted in rapid removal of waste lubricant No. 2.     

A mono-2-ethylhexyl phthalate hydrolase from a Gordonia sp. that is able to dissimilate di-2-ethylhexyl phthalate

Gordonia sp. strain P8219, a strain able to decompose di-2-ethylhexyl phthalate, was isolated from machine oil-contaminated soil. Mono-2-ethylhexyl phthalate hydrolase was purified from cell extracts of this strain. This enzyme was a 32,164-Da homodimeric protein, and it effectively hydrolyzed monophthalate esters, such as monoethyl, monobutyl, monohexyl, and mono-2-ethylhexyl phthalate. The K(m) and V(max) values for mono-2-ethylhexyl phthalate were 26.9 +/- 4.3 microM and 18.1 +/- 0.9 micromol/min . mg protein, respectively. The deduced amino acid sequence of the enzyme exhibited less than 30% homology with those of meta-cleavage hydrolases which are serine hydrolases but exhibited no significant homology with the sequences of serine esterases. The pentapeptide motif GXSXG, which is conserved in serine hydrolases, was present in the sequence. The enzymatic properties and features of the primary structure suggested that this enzyme is a novel enzyme belonging to an independent group of serine hydrolases.     

一株菊酯类农药降解菌的分离鉴定及其降解酶基因的克隆

摘要：【目的】筛选分离高效降解菊酯类农药的光合细菌,研究其降解特性,并对该菌株中降解酶基因进行克隆与初步分析。【方法】根据分离菌株的细胞形态结构、活细胞光吸收特征、生理生化特征及其16S rDNA序列系统发育分析鉴定降解菌,气相色谱法测定该菌株降解菊酯类农药的能力,PCR方法克隆降解酶基因。【结果】菌株PSB07-21属红假单胞菌属（Rhodopseudomonas sp.）,其降解最佳条件为3000 lx、35℃、pH 7,在此条件下培养15 d对600 mg/L甲氰菊酯、氯氰菊酯、联苯菊酯降解率分别为