基于功能基因芯片技术的高寒草甸土壤微生物功能基因研究

土壤微生物是陆地生态系统的重要组成部分,在生物地球化学循环和维持生态系统功能等方面发挥着极其重要的作用。研究青藏高原高寒草甸的土壤微生物功能基因及其主要影响因子,对了解青藏高原微生物的功能代谢潜力和预测青藏高原受全球变化的影响具有重要意义。本研究选择三江源地区高寒沼泽化草甸和高寒草甸这两种草甸类型土壤微生物为对象,利用微生物功能基因芯片(GeoChip4.0)技术开展微生物功能基因多样性研究。结果表明:两种草甸样地共检测到各类型功能基因45818个,涉及到16类微生物介导的关键生物过程;除趋势对应分析和不相似性检验结果均表明,不同草甸类型的微生物功能基因结构有明显差异;检测到土壤微生物参与的所有碳代谢过程和关键的氮循环过程,高寒沼泽化草甸比高寒草甸具有较高的碳降解相关功能基因和氮素基因丰度和代谢潜力,但两种草甸类型的土壤有机碳和全氮含量相对稳定;典范对应分析结果表明,土壤p H值和土壤含水量是影响微生物功能基因结构的主要因素。综上,本研究结果有助于了解环境变化对高寒草地生态系统结构和功能的影响,可为高寒草地生态系统的保护和管理提供科学依据。     

五节芒对重金属污染土壤微生物生物量和呼吸的影响

选择3个五节芒在重金属污染地的定居点作为研究样地,其中两个为Pb/Zn矿尾矿砂堆积地（W：黄岩铅锌尾矿;Y：三门铅锌尾矿）,一个为冶炼厂附近污染农田（N）,分别测定其根围与根际土壤微生物基础呼吸、微生物量碳、微生物量氮、土壤理化特性和土壤重金属含量.结果表明：根际土壤微生物基础呼吸和微生物量氮均显著地高于根围土壤（P<0.05）,除了N样地外,微生物量碳在根围与根际之间差异不显著（P>0.05）.根际土壤有机碳、总氮（Y样地除外）和离子交换量（N样地除外）低于根围土壤.根际重金属（Pb、Zn、Cu、Cd）总量与DTPA（二乙三胺五乙酸）可提取量普遍低于根围土壤.冗余分析（RDA）表明,根围和根际土壤微生物与土壤理化特性呈不同程度的正相关,而与土壤重金属含量呈现不同程度的负相关.主分量及回归分析同样证明土壤微生物总体变化与土壤理化特性呈正相关（根围R²=0.653;根际R²=0.690）,而与重金属含量呈负相关（根围R²=0.610;根际R²=0.662）.     

不同主伐方式对兴安落叶松(Larix gmelinii)根际土壤理化性质及微生物群落的影响

对内蒙古根河大兴安岭林区1987年（恢复后期）、2013年（恢复前期）的皆伐与渐伐样地以及未采伐对照样地兴安落叶松的根际土壤理化性质、微生物群落结构和多样性进行了分析,旨在揭示不同主伐方式对兴安落叶松根际土壤理化性质以及微生物群落的影响。结果表明,主伐后兴安落叶松根际土壤的理化性质以及微生物群落的变化特征与非根际土壤存在区别,且不同主伐方式在不同恢复时期会对兴安落叶松根际土壤理化性质以及微生物群落产生不同的影响：（1）根际与非根际土壤微生物群落中真菌均比细菌更容易受到土壤理化性质的影响,但是单一种理化性质的改变对根际与非根际土壤微生物群落均不能造成显著影响。（2）相较于未采伐对照样地,皆伐样地恢复前期兴安落叶松根际土壤理化性质、微生物群落结构和多样性没有显著变化。皆伐样地恢复后期,兴安落叶松根际土壤理化性质（总碳、总氮、速效氮、pH）发生了显著变化,导致了微生物量碳氮、真菌磷脂脂肪酸（PLFA）含量显著降低、细菌/真菌显著升高,辛普森多样性指数显著降低。（3）渐伐样地恢复前期兴安落叶松根际土壤总碳、总氮、速效氮含量以及含水量均显著降低,总钾、速效磷含量显著上升,根际土壤微生物量碳含量显著降低。恢复后期,兴安落叶松根际土壤总磷含量显著升高,根际土壤微生物量碳的含量已恢复到渐伐前水平。渐伐干扰对根际土壤各微生物类群PLFA含量、微生物群落结构以及多样性没有显著影响。     

土地利用变化对川西米亚罗林土壤活性碳库的影响

为了揭示土地利用变化对土壤活性有机碳库的影响,在四川省亚高山米亚罗林区,以原始冷杉林(M-Y)和由原始林转化成的45年龄云杉人工林(M-60)、25年龄云杉人工林(M-80)和菜地(M-C)等4种土地利用类型为研究对象,进行了土壤的微生物量碳(MBC)、水溶性有机碳(WDOC)和易氧化有机碳(LOC)的含量和季节变化研究.结果表明,土地利用变化明显影响土壤活性有机碳组分的含量,其中微生物量碳和水溶性有机碳的变化趋势为M-Y>M-60>M-80>M-C,易氧化有机碳的变化趋势则为M-60>M-Y.土地利用变化没有改变活性有机碳各组分的垂直分布,各组分均随着土层深度的增加而降低,季节变化幅度较小,但枯落物层和表层土壤的变化幅度明显高于深层土壤,而各组分的分配比例变化幅度明显小于活性有机碳含量的变化.     

高寒湿地和草甸退化及恢复对土壤微生物碳代谢功能多样性的影响

为研究高寒湿地、草甸的退化及恢复与土壤微生物碳代谢功能多样性的关系,以及影响土壤微生物碳代谢功能多样性的关键因素,利用BIOLOG Eco微平板法,分析了甘肃玛曲地区5类(湿地、沼泽化草甸、高寒草甸、退化草甸、人工恢复草甸) 14个退化与恢复样地的土壤微生物对单一碳源的利用情况。结果表明,从湿地到沙化草地的逐渐退化过程中,草甸的土壤微生物群落代谢活性差异显著;主要是由于在湿地干化过程中,微生物活性逐渐升高,沼泽草甸土壤微生物活性最高;随着草甸不断退化,微生物活性逐渐降低,沙化草地最低;而人工补播恢复使土壤微生物活性有所增加,表明退化对微生物碳代谢功能多样性造成显著影响,人工恢复措施在一定程度上提高了土壤微生物活性。聚合物类(吐温40、吐温80、环状糊精、肝糖)、氨基酸类及碳水化合物类是土壤微生物主要利用的碳源。冗余分析结果显示,土壤的碳氮比、含水量、有机碳、全氮、容重、氮磷比、p H及植被覆盖度是影响土壤微生物碳代谢功能多样性的关键因子。因此,可用土壤碳代谢功能多样性变化评价高寒湿地及草甸的退化和恢复及其变化程度。     

不同经营模式茶园土壤微生物熵对台风干扰的响应

台风干扰可能显著影响我国东南沿海山地茶园土壤有机碳稳定性和矿化过程，而土壤微生物熵（qMB）是指示土壤有机碳稳定性和矿化潜力的敏感指标。因此，研究不同经营模式茶园土壤微生物熵对台风干扰的响应，可为山地茶园土壤碳库管理提供重要科学依据。为此，以浙江省台州市天台县苍山顶传统化肥经营的纯茶园（M0）、林茶间作（M1）、茶园养鸡（M2）、施用微生物肥料的纯茶园（M3）四种经营模式茶园为研究对象，在2021年7月28日台风"烟花"（第6号台风）来临前一天（T1）、台风过境后一天（T2）和台风过境后7天（T3），按照表层土壤（0-10 cm）和亚表层土壤（10-30 cm）采集四种经营模式的茶园土样，同步测定土壤有机碳（SOC）含量、微生物生物量碳（MBC）和可溶性有机碳（DOC）含量。结果表明：（1）台风干扰对M2和M3的土壤有机碳影响更显著，而且不同经营模式茶园中表层和亚表层的土壤有机碳含量对台风干扰的响应存在差异；（2）台风干扰对M2的土壤微生物熵影响更显著，对表层土壤的微生物熵影响更显著，说明台风干扰对M2土壤有机碳稳定性和矿化影响显著，M2的土壤微生物熵对台风干扰的响应显著；（3）台风干扰对M2的土壤微生物生物量碳影响最显著，对M0和M1的影响最弱，且不同经营模式茶园中不同土层的土壤微生物生物量碳对台风干扰的响应存在差异；（4）台风干扰对M0的土壤可溶性有机碳含量影响更显著，M1和M3次之，对M2的影响最弱。而且不同经营模式茶园中表层和亚表层土壤的可溶性有机碳含量对台风干扰的响应存在差异。综上，台风干扰会对不同经营模式茶园土壤微生物熵影响程度不同，说明台风干扰对不同经营模式茶园土壤有机碳稳定性具有不同程度的影响，其中M2的土壤有机碳是响应台风干扰最敏感的经营模式茶园。     

微生物降解石油烃的功能基因研究进展

微生物对石油烃的降解在自然衰减去除土壤和地下水石油烃污染的过程中发挥了重要作用。微生物通过其产生的一系列酶来利用和降解这类有机污染物,其中,编码关键降解酶的基因称为功能基因。功能基因可作为生物标志物用于分析环境中石油烃降解基因的多样性。因此,研究石油降解功能基因是分析土著微生物群落多样性、评价自然衰减潜力与构建基因工程菌的重要基础。本文主要介绍了烷烃和芳香烃在有氧和无氧条件下的微生物降解途径,重点总结了烷烃和芳香烃降解的主要功能基因及其作用,包括参与羟化作用的单加氧酶和双加氧酶基因、延胡索酸加成反应的琥珀酸合酶基因以及中心中间产物的降解酶基因等。     

林冠氮添加和林下植被去除对杉木林土壤有机碳组分的影响

为探讨氮添加和林下植被管理对杉木人工林土壤有机碳组分的影响,以福建沙县官庄国有林场杉木人工林为对象,设置对照（CK）、林冠氮添加（CN）、林下植被去除（UR）、林冠氮添加和林下植被去除（CNUR）4个处理的野外控制实验,研究林冠氮添加和林下植被去除对土壤总有机碳、惰性有机碳、易氧化有机碳、颗粒有机碳、微生物生物量碳和水溶性有机碳的影响。结果表明：5年CN添加处理显著降低易氧化有机碳（10—20 cm）和微生物生物量碳（20—40 cm）含量,增加表层土壤颗粒有机碳占总有机碳的比例。UR处理对土壤有机碳组分的作用不显著,而CNUR处理显著降低表层土壤水溶性有机碳含量及其比例。土壤各有机碳组分均与土壤含水量、可溶性有机氮、微生物生物量氮和铵态氮呈显著正相关。研究表明,土壤活性有机碳比惰性有机碳对林冠氮添加（5年）的响应更敏感,且表现为中下层土壤响应大于表层土壤,短期氮添加能促进土壤活性有机碳的分解,而林下植被去除在短时间内可能通过改变土壤含水量和可利用氮减缓有机碳的分解与转化,从而补偿由于氮添加引起的土壤活性有机碳下降,未来需要通过长期氮添加实验进一步研究土壤有机碳动态变化的响应机制。     

大兴安岭火烧迹地恢复初期土壤微生物群落特征

对大兴安岭兴安落叶松2003年重度和中度火烧迹地以及未过火样地的土壤微生物群落进行了考察,旨在揭示火烧迹地恢复初期土壤微生物群落变化特征。研究结果表明火烧迹地土壤养分(全氮、全碳、土壤有机质、有效氮)和土壤水分与未过火对照样地存在显著差异;火烧迹地土壤微生物量碳氮、微生物代谢活性以及碳源利用能力均显著高于对照样地;但火烧迹地与对照样地土壤微生物群落结构指标土壤微生物量碳氮比(MBC/MBN)以及多样性指数没有显著差异。相关分析结果表明:土壤微生物量、代谢活性和碳源利用能力与土壤养分指标(全碳、全氮、速效氮、有机质)和土壤水分含量有显著相关性。主成分分析的结果表明火烧与否是火烧样地与对照样地土壤微生物对碳源利用能力差异的原因。所有样地土壤微生物群落真菌比例较高,可能与该地区土壤酸碱度有关(pH=4.12—4.68)。经过6a的恢复,重度和中度火烧迹地的土壤养分和水分、土壤微生物群落的生长、代谢、以及群落多样性仍存在差异,但均不显著,表明此时火烧程度对土壤微生物群落的影响已很微弱。     

不同施肥处理与地膜覆盖对土壤微生物群落功能多样性的影响

微生物多样性是表征土壤质量变化的敏感指标。应用Biolog技术探讨了不同施肥处理与地膜覆盖对土壤微生物功能多样性的影响,从微生物功能多样性的角度评价施肥与地膜覆盖对土壤质量的影响。试验结果表明：裸地条件下,肥料合理配施可以增强微生物对碳源的利用程度（AWCD）,显著增加微生物功能多样性（Shannon指数）。地膜覆盖和施肥的交互作用降低了微生物对碳源的利用率,降低微生物的丰富度,改变其均匀度。土壤微生物碳源利用的聚类和主成分分析表明,各施肥处理在碳源的利用上存在较大差异,覆膜加剧了各处理之间的分异程度。糖类和氨基酸类碳源是微生物利用的主要碳源。土壤微生物对碳源利用受到土壤pH、速效钾的显著影响。此外,有机碳、速效氮含量和土壤碳氮比与土壤微生物群落功能多样性密切相关。     

植物、土壤及土壤管理对土壤微生物群落结构的影响

土壤微生物是土壤生态系统的重要组成部分,对土壤微生物群落结构多样性的研究是近年来土壤生态学研究的热点。本文综述了有关植物、土壤类型以及土壤管理措施对土壤微生物群落结构影响的最新研究结果,指出植物的作用因植物群落结构多样性、植物种类、同种植物不同的基因型,甚至同一植物不同根的区域而异;而土壤的作用与土壤质地和有机质含量等因素有关;植物和土壤类型在对土壤微生物群落结构影响上的作用存在互作关系。不同的土壤管理措施对土壤微生物群落结构影响较大,长期连作、大量的外援化学物质的应用降低了土壤微生物的多样性;而施用有机肥、免耕可以增加土壤微生物群落结构多样性,有利于维持土壤生态系统的功能。     

Estimating respiration of roots in soil: Interactions with soil CO2, soil temperature and soil water content

Little information is available on the variability of the dynamics of the actual and observed root respiration rate in relation to abiotic factors. In this study, we describe I) interactions between soil CO₂ concentration, temperature, soil water content and root respiration, and II) the effect of short-term fluctuations of these three environmental factors on the relation between actual and observed root respiration rates. We designed an automated, open, gas-exchange system that allows continuous measurements on 12 chambers with intact roots in soil. By using three distinct chamber designs with each a different path for the air flow, we were able to measure root respiration over a 50-fold range of soil CO₂ concentrations (400 to 25000 ppm) and to separate the effect of irrigation on observed vs. actual root respiration rate. All respiration measurements were made on one-year-old citrus seedlings in sterilized sandy soil with minimal organic material.Root respiration was strongly affected by diurnal fluctuations in temperature (Q₁₀ = 2), which agrees well with the literature. In contrast to earlier findings for Douglas-fir (Qi et al., 1994), root respiration rates of citrus were not affected by soil CO₂ concentrations (400 to 25000 ppm CO₂; pH around 6). Soil CO₂ was strongly affected by soil water content but not by respiration measurements, unless the air flow for root respiration measurements was directed through the soil. The latter method of measuring root respiration reduced soil CO₂ concentration to that of incoming air. Irrigation caused a temporary reduction in CO₂ diffusion, decreasing the observed respiration rates obtained by techniques that depended on diffusion. This apparent drop in respiration rate did not occur if the air flow was directed through the soil. Our dynamic data are used to indicate the optimal method of measuring root respiration in soil, in relation to the objectives and limitations of the experimental conditions.     

生物质炭对水稻土团聚体微生物多样性的影响

生物质炭施用对土壤微生物群落结构的影响已有报道,但土壤团聚体粒组中微生物群落对生物质炭施用的响应的研究还相对不足。以施用玉米秸秆生物质炭两年后的水稻土为对象,采用团聚体湿筛法,通过高通量测序对土壤团聚体的微生物群落结构与多样性进行分析,结果表明:(1)与对照相比,生物质炭施用显著促进了大团聚体(2000—250μm)的形成,并提高了团聚体的稳定性。(2)不同粒径团聚体间微生物相对丰度存在显著差异。在未施生物质炭的处理(C0)中,随着团聚体粒径增大,变形菌门、子囊菌门、β-变形杆菌目、格孢腔菌目的相对丰度逐渐降低,而酸杆菌门、担子菌门、粘球菌目、类球囊霉目的相对丰度逐渐升高。(3)生物质炭施用显著改变了团聚体间的微生物群落结构。与C0处理相比,生物质炭施用处理的大团聚体中变形菌门、鞭毛菌门和β-变形杆菌目的相对丰度分别显著提高了14.37%、33.28%和33.82%;微团聚体(250—53μm)中酸杆菌门、子囊菌门和粘球菌目的相对丰度分别显著降低了20.15%、19.93%和17.66%;粉、黏粒组分(53μm)中担子菌门的相对丰度升高90.25%,而子囊菌门和鞭毛菌门的相对丰度分别降低12.15%和12.58%。由此可见,生物质炭不仅改变土壤团聚体组成和分布,同时伴随着土壤微生物群落结构的改变。     

Available soil nitrogen in relation to fractions of soil nitrogen and other soil properties

The available N of 27 soils from England and Wales was assessed from the amounts of N taken up over a 6-month period by perennial ryegrass grown in pots under uniform environmental conditions. Relationships between availability and the distribution of soil N amongst various fractions were then examined using multiple regression. The relationship: available soil N (mg kg^–1 dry soil)=(N_min×0.672)+(N_inc×0.840)+(N_mom×0.227)–5.12 was found to account for 91% of the variance in available soil N, where N_min=mineral N, N_inc=N mineralized on incubation and N_mom=N in macro-organic matter. The N mineralized on incubation appeared to be derived largely from sources other than the macro-organic matter because these two fractions were poorly correlated. When availability was expressed in terms of available organic N as % of soil organic N (N_ao) the closest relationship with other soil characteristics was: N_ao=[N_inc×(1.395–0.0347×CN_mom]+[N_mom×0.1416], where CN_mom=CN ratio of the macro-organic matter. This relationship accounted for 81% of the variance in the availability of the soil organic N.The conclusion that the macro-organic matter may contribute substantially to the available N was confirmed by a subsidiary experiment in which the macro-organic fraction was separated from about 20 kg of a grassland soil. The uptake of N by ryegrass was then assessed on two subsamples of this soil, one without the macro-organic matter and the other with this fraction returned: uptake was appreciably increased by the macro-organic matter.     

The porosity of soil aggregates from bulk soil and from soil adhering to roots

Summary Total porosity and pore-size distribution (p.s.d.) were determined in soil aggregates taken in plots planted with maize and treated with farmyard manure and three rates of compost. Soil aggregates were collected from the soil adherent to the maize roots (root soil aggregates) and from bulk soil (bulk soil aggregates). Mercury intrusion porosimetry was used to evaluate the total porosity and the p.s.d. Treatments did not affect the total porosity of the bulk soil aggregates. The same was observed for the root soil aggregates. However the total porosity of the root soil aggregates was always lower than that of the bulk soil aggregates. The loss of total porosity was found to be due to a decrease in the percentage of larger pores with respect to the total.     

Linking soil bacterial biodiversity and soil carbon stability

Native soil carbon (C) can be lost in response to fresh C inputs, a phenomenon observed for decades yet still not understood. Using dual-stable isotope probing, we show that changes in the diversity and composition of two functional bacterial groups occur with this ‘priming'' effect. A single-substrate pulse suppressed native soil C loss and reduced bacterial diversity, whereas repeated substrate pulses stimulated native soil C loss and increased diversity. Increased diversity after repeated C amendments contrasts with resource competition theory, and may be explained by increased predation as evidenced by a decrease in bacterial 16S rRNA gene copies. Our results suggest that biodiversity and composition of the soil microbial community change in concert with its functioning, with consequences for native soil C stability.Substrate inputs can stimulate decomposition of native soil organic carbon (SOC; Kuzyakov et al., 2000), a phenomenon known as the ‘priming effect'' (Kuzyakov, 2010), and is considered large enough to influence ecosystem C balance (Wieder et al., 2013). Two functionally distinct groups of microorganisms are postulated to mediate priming: one that grows rapidly utilizing labile C, and one that grows slowly, breaking down recalcitrant SOC (Fontaine et al., 2003; Blagodatskaya et al., 2007). However, distinguishing these groups is technically challenging. Here, we used dual-stable isotope probing with ¹³C-glucose and ¹⁸O-water to identify bacteria in these two groups growing in response to single and repeated pulses of glucose. Organisms that utilize labile C for growth assimilate both ¹³C-glucose and ¹⁸O-water into their DNA, whereas organisms that grow using SOC incorporate only ¹⁸O-water. Differential isotope incorporation leads to a range of DNA densities separable through isopycnic centrifugation, which can then be characterized by sequencing (Radajewski et al., 2000).We sequenced fragments of bacterial 16S rRNA genes following single and repeated glucose pulses. We hypothesized that the single pulse of labile C would stimulate growth of opportunistic organisms, thus immobilizing nutrients and suppressing growth and diversity of the SOC-utilizing community, decreasing SOC decomposition (negative priming), a response analogous to that observed in plant communities in response to chronic N additions (Tilman, 1987; Clark and Tilman, 2008). We hypothesized that multiple glucose additions would stimulate growth of a more diverse bacterial community, including more native SOC-utilizing organisms that possess enzymes to decompose recalcitrant compounds, causing positive priming (Fontaine et al., 2003; Kuzyakov, 2010).Soil from a ponderosa pine ecosystem was amended weekly for 7 weeks with 500 μg C-glucose per gram soil (2.65 atom % ¹³C) in 100 μl deionized water or with 100 μl deionized water (n=5). Measurements of δ¹³C–CO₂ and [CO₂] enabled the partitioning of CO₂ into that derived from added glucose or from native SOC (C_SOC):where C_total is CO₂–C from glucose-amended samples, δ_total is the δ¹³C–CO₂ from glucose-amended samples, δ_glucose is the δ¹³C of the added glucose and δ_SOC is the δ¹³C–CO₂ evolved from the non-amended samples. Priming was calculated as the difference between SOC oxidation of the amended and non-amended samples. With this approach, any evolved CO₂ carrying the ¹³C signature of the added glucose is considered respiration of glucose, including ¹³C-labeled biomass and metabolites derived from prior glucose additions. Thus, this approach quantifies priming as the oxidation of SOC present at the beginning of the experiment, consistent with many other studies of priming (Cheng et al., 2003; De Graaff et al., 2010).In a parallel incubation for dual-stable isotope probing, the repeated-pulse samples received unlabeled glucose (500 μg C-glucose per gram soil) for 6 weeks while the non-amended and single-pulse samples received sterile deionized water. In week 7, samples received one of four isotope treatments (n=3): 97 atom % H₂ ¹⁸O (non-amended soil), 99 atom % ¹³C-glucose and 97 atom % H₂ ¹⁸O (single- and repeated-pulse soil), ¹²C-glucose and 97 atom % H₂ ¹⁸O (repeated-pulse soil) or ¹²C-glucose and H₂ ¹⁶O (repeated-pulse soil). After incubating for 7 days, soil was frozen at −40 °C. DNA was extracted, separated through isopycnic centrifugation, and two density ranges were sequenced for the bacterial 16S rRNA gene (Supplementary Figure 1): 1.731–1.746 g ml⁻¹ (hereafter called the SOC-utilizing community) and 1.759–1.774 g ml⁻¹ (hereafter called the glucose-utilizing community).Amplicons of the V3–V6 16S rRNA region were bar coded with broad-coverage fusion PCR primers and pooled before sequencing on a Genome Sequencer FLX instrument. These sequence data have been submitted to the GenBank database under accession number SRP043371. Data were checked for chimeras (Edgar et al., 2011), demultiplexed and quality checked (Caporaso et al., 2010). Taxonomy was assigned to genus at the ⩾80% bootstrap confidence level (Cole et al., 2009).We used the Shannon''s diversity index (H′), commonly used in microbial systems (Fierer and Jackson, 2006), to assess changes in microbial diversity. Analysis of variance was used to compare the amount of DNA within densities between isotope treatments (Supplementary Figure 2) and to test the effects of the treatments on the Shannon''s diversity (Figure 2) and Pielou''s evenness (Supplementary Figure 3) of the active bacterial communities, with post hoc Student''s t-tests, α=0.05. PRIMER 6 and PERMANOVA were used to create the nonmetric multidimensional scaling ordination and to compare bacterial communities between glucose treatments and the two sequenced density ranges.The single pulse of glucose suppressed SOC oxidation, whereas repeated pulses increased SOC oxidation (Figure 1). Few experiments to date have examined priming in response to repeated substrate amendments (Hamer and Marschner, 2005; Qiao et al., 2014), even though in nature soil receives repeated substrate pulses from litterfall and rhizodeposition. Our results demonstrate the dynamic response of SOC decomposition to repeated labile C inputs.Open in a separate windowFigure 1Weekly priming rates calculated as the difference in SOC respired between glucose-amended and non-amended soil (n=5).Dual-stable isotope probing was able to separate the growing bacteria into two groups with distinct DNA densities (P<0.001, PERMANOVA; Figure 3a), indicating differential uptake of ¹³C-glucose and ¹⁸O-water. In response to the initial glucose addition, the diversity of the growing glucose- and SOC-utilizing bacterial communities declined compared with the non-amended community (P<0.001, t-tests; Figure 2), driven by a strong decrease in evenness (Supplementary Figure 3). In the SOC-utilizing community, where DNA was labeled with ¹⁸O only, the relative abundance of Bacillus increased 4.9-fold compared with the non-amended control to constitute 31.6% of the community (Figure 3b). Bacillus survives well under low-nutrient conditions (Panikov, 1995), and is able to synthesize a suite of extracellular enzymes capable of degrading complex substrates (Priest, 1977), traits that are conducive for using SOC for growth. In the glucose-utilizing community, where DNA was labeled with both ¹³C and ¹⁸O, Arthrobacter increased 67.7-fold relative to the non-amended control to constitute 75.5% of the growing bacteria (Figure 3b). In culture experiments, Arthrobacter can rapidly take up and store glucose for later use (Panikov, 1995) and here we find it dominating the high-density DNA fractions, signifying that it is using the labeled glucose to grow. The increased biomass of Arthrobacter may have resulted in greater resource competition, thus reducing the diversity of the growing community, as is frequently found in plant communities (Bakelaar and Odum, 1978; Clark and Tilman, 2008).Open in a separate windowFigure 2Shannon''s diversity index (H′) of the non-amended, single-pulse, and repeated-pulse treatments (n=3) in the SOC- (mid-density) and glucose-utilizing (high-density) communities. Treatments with the same letter are not significantly different from each other (Student''s t, α=0.05).Open in a separate windowFigure 3(a) Nonmetric multidimensional scaling ordination showing differences in growing bacterial communities at the genus taxonomic level in the SOC-utilizing (mid-density; open symbols) and glucose-utilizing (high-density; closed symbols) groups of non-amended (Δ), single-pulse (○) and repeated-pulse (□) treatments (n=3). (b) Pie charts of genera in the SOC- and glucose-utilizing communities of the single- and repeated-pulse treatments (n=3). Genera with relative abundances >5% are listed in the figure legend.After repeated glucose amendments, the diversity of the growing community recovered to non-amendment levels (Figure 2) without strongly dominant organisms (Figure 3b and Supplementary Figure 3). The higher diversity found after repeated glucose pulses may be explained by trophic interactions where predators graze on prey populations that have been enlarged by resource addition, suppressing competition between prey species and causing secondary mobilization of nutrients (Clarholm, 1985). The decrease in total bacterial 16S rRNA gene copies in the repeated-pulse—compared with the single-pulse—treatment (Supplementary Figure 4) supports predation as a potential mechanism explaining the observed diversity increase after repeated glucose pulses.The recovery of diversity after repeated glucose pulses contrasts with resource competition theory (Tilman, 1987). When chronic additions of a limiting resource are applied, species diversity and evenness typically decrease (Bakelaar and Odum, 1978; Clark and Tilman, 2008) because competitive organisms become dominant. We observed this after the single glucose pulse, but not after repeated pulses. This diversity response may be the result of community shifts facilitated by short bacterial life cycles and the tens to hundreds of generations expected during the 7-week incubation (Behera and Wagner, 1974). In contrast, systems on which most ecological theory is based (for example, plants) might achieve perhaps 20 generations in a multi-decadal field experiment (Bakelaar and Odum, 1978; Clark and Tilman, 2008). With more generations, more community dynamics can occur, including increased resource cascades in which extracellular enzymes, metabolites or lysed cells of one functional group increase substrates for another (Blagodatskaya and Kuzyakov, 2008). Our results highlight the opportunity to test ecological theories in microbial ecosystems (Prosser et al., 2007), particularly as the short life cycles of microbes makes them well suited for pursuing ecological questions in an evolutionary framework (Jessup et al., 2004).The priming effect is ubiquitous, yet its drivers remain elusive. Our results suggest that changes in the diversity and composition of the growing bacterial community contribute to priming, and thus that ecosystem properties such as soil C storage may be sensitive to soil microbial biodiversity.     

耕作方式对潮土土壤团聚体微生物群落结构的影响

为探究不同耕作方式对潮土土壤团聚体微生物群落结构和多样性的影响,采用磷脂脂肪酸(PLFA)法测定了土壤团聚体中微生物群落。试验设置4个耕作处理,分别为旋耕+秸秆还田(RT)、深耕+秸秆还田(DP)、深松+秸秆还田(SS)和免耕+秸秆还田(NT)。结果表明:与RT相比,DP处理显著提高了原状土壤和>5 mm粒级土壤团聚体中真菌PLFAs量和真菌/细菌,为真菌的繁殖提供了有利条件,有助于土壤有机质的贮存,提高了土壤生态系统的缓冲能力;提高了5～2 mm粒级土壤团聚体中细菌PLFAs量,降低了土壤革兰氏阳性菌/革兰氏阴性菌,改善了土壤营养状况;提高了<0.25 mm粒级土壤团聚体中微生物丰富度指数。总的来说,深耕+秸秆还田(DP)对土壤团聚体细菌和真菌生物量有一定的提高作用,并且在一定程度上改善了土壤团聚体微生物群落结构,有利于增加土壤固碳能力和保持土壤微生物多样性。冗余分析结果表明,土壤团聚体总PLFAs量、细菌、革兰氏阴性菌和放线菌PLFAs量与土壤有机碳相关性较强,革兰氏阳性菌PLFAs量与总氮相关性较强。各处理较大粒级土壤团聚体微生物群落主要受碳氮比、含水量、pH值和团聚体质量分数的影响,较小粒级土壤团聚体微生物群落则主要受土壤有机碳和总氮的影响。     

酸性硫酸盐土水改旱后土壤化学性状的变异初报

探讨了酸性硫酸盐水稻土改为旱作后土壤化学性状的变异以及比较不同利用方式之间的经济效益．结果表明,酸性硫酸盐水稻土改种甜玉米和蔬菜后,土壤化学性状发生显著变化．耕层土壤酸度、水溶性硫酸根含量、土壤活性铝和活性铁含量均显著降低．经济效益得到显著提高．建议对水改旱后的环境效应进行深入研究以及进行定位观测,以便合理利用这一特殊的土壤资源     

Carbon input to soil may decrease soil carbon content

It is commonly predicted that the intensity of primary production and soil carbon (C) content are positively linked. Paradoxically, many long‐term field observations show that although plant litter is incorporated to soil in large quantities, soil C content does not necessarily increase. These results suggest that a negative relationship between C input and soil C conservation exists. Here, we demonstrate in controlled conditions that the supply of fresh C may accelerate the decomposition of soil C and induce a negative C balance. We show that soil C losses increase when soil microbes are nutrient limited. Results highlight the need for a better understanding of microbial mechanisms involved in the complex relationship between C input and soil C sequestration. We conclude that energy available to soil microbes and microbial competition are important determinants of soil C decomposition.