Low Divergence in rDNA ITS Sequences Among Five Species of Fucus (Phaeophyceae) Suggests a Very Recent Radiation

Sequences from the two ribosomal DNA internal transcribed spacers (ITS1 and ITS2) were compared among five species of Fucus. Based on the present taxon sampling, parsimony analysis showed that Fucus serratus is the sister-group of the remaining Fucus species when Ascophyllum nodosum was used as an outgroup. The topology of the tree was (Fucus serratus (F. lutarius (F. vesiculosus (F. spiralis+F. ceranoides)))). The extremely low variation observed suggests a very recent radiation of the genus which supports the view widely accepted that the Fucales are among the most evolutionarily advanced of the brown algae. We further note that sequence differences between Fucus and Ascophyllum were 28%: this does not rule out the utility of ITS sequences within the Fucaceae. The very low number of informative positions allows to demonstrate empirically that distance matrix methods group on the basis of symplesiomorphies. Received: 17 February 1997 / Accepted: 17 April 1997     

Phylogenetic relationships ofPelvetia andPelvetiopsis (Phaeophyceae) based on small subunit ribosomal DNA sequences

Nucleotide sequences of the small-subunit (SSU) ribosomal DNA were determined forPelvetia babingtonii, P. canaliculate, Pelvetiopsis limitata, andAscophyllum nodosum in the family Fucaceae. A total of 1755 positions were aligned for the whole sequence. The positional differences in the primary structure among the taxa ranged from 16 to 30 nucleotide changes in pairwise comparisons. There was a minimum divergence betweenPs. limitata andP. babingtonii while a maximum betweenPs. limitata andP. canaliculata. The SSU rDNA trees showed that the genusPelvetia was not monophyletic and the genusPelvetiopsis was not closely related toPelvetia. Our results suggest that the taxonomic revision of the genusPelvetia as well as the family Fucaceae is needed based on detailed morphological observations.     

Isolation and cross‐species amplification of microsatellite loci from the fucoid seaweeds Fucus vesiculosus,F. serratus and Ascophyllum nodosum (Heterokontophyta,Fucaceae)

The Fucaceae is a family of brown seaweeds that dominate and frequently co‐occur on North Atlantic rocky shores. We developed nine polymorphic microsatellite markers for the fucoid seaweeds Fucus vesiculosus, F. serratus and Ascophyllum nodosum using a combined, enriched library. Six of these loci were polymorphic in at least two species, showing from two to eight alleles with heterozygosities ranging from 0.41 to 0.85. Loci were also tested on F. spiralis, revealing five polymorphic microsatellite loci in this species.     

Content of alginic acid and fucoidan in fucus algae of the Barents sea

Seasonal changes in the content of alginic acid and fucoidan have been studied in four species of fucus algae from the Barents sea: Fucus vesiculosus, F. distichus, F. serratus, and Ascophyllum nodosum. These polysaccharides are accumulated in the biomass of the algae during summer and autumn. To ensure complete processing of fucus algae it is recommended that the raw material be harvested within this period.     

Cleavage of DNA by brown algal polyphenols

Extracts of marine algae have been tested to determine their ability to cleave DNA. The species producing positive results wereAscophyllum nodosum, Fucus serratus, F. spiralis, F. vesiculosus, Halidrys siliquosa andHimanthalia elongata. Partial purification of each extract by dialysis against water revealed that the active compounds in each species were high molecular weight polyphenols.     

用ITS序列研究杨属各组之间的系统发育关系

ITS sequences of 15 representative species of five sections inthe genus Populus L. were determined. By using direct sequencing of PCR product, it was found that the fragments of internal transcribed spacers (ITS) are about 594 bp in length. The length of ITS-1 and ITS-2 is about 220 bp and 210 bp, respectively, while that of 5.8s is 164 bp. Its G+C content is about 69.0%. The number of phylogenetically informative loci is higher in ITS-2 than in ITS-1. Transversion and transition are two main factors that drive the ITS evolution, and more insertions and deletions occurred in ITS-2. Taking Salix matsudana Koidz. and Salix suchowensis Cheng as outgroups, phylogenetic analysis of ITS sequences using PAUP 4.0 software indicated that Populus is monophyletic group and can be divided into two main clades. One is the section Leuce, and the other is the remaining sections.     

Phylogenetic Relationship ofPopulusSections by ITS Sequence Analysis

ITS sequences of 15 representative species of five sections in the genus Populus L. were determined. By using direct sequencing of PCR product, it was found that the fragments of internal transcribed spacers (ITS) are about 594 bp in length. The length of ITS-1 and ITS-2 is about 220 bp and 210 bp, respectively, while that of 5.8s is 164 bp. Its G+C content is about 69.0%. The number of phylogenetically informative loci is higher in ITS-2 than in ITS-1. Transversion and transition are two main factors that drive the ITS evolution, and more insertions and deletions occurred in ITS-2. Taking Salix matsudana Koidz. and Salix suchowensis Cheng as outgroups, phylogenetic analysis of ITS sequences using PAUP 4.0 software indicated that Populus is monophyletic group and can be divided into two main clades. One is the section Leuce , and the other is the remaining sections.     

Convergent adaptation to a marginal habitat by homoploid hybrids and polyploid ecads in the seaweed genus Fucus

Hybridization and polyploidy are two major sources of genetic variability that can lead to adaptation in new habitats. Most species of the brown algal genus Fucus are found along wave-swept rocky shores of the Northern Hemisphere, but some species have adapted to brackish and salt marsh habitats. Using five microsatellite loci and mtDNA RFLP, we characterize two populations of morphologically similar, muscoides-like Fucus inhabiting salt marshes in Iceland and Ireland. The Icelandic genotypes were consistent with Fucus vesiculosus x Fucus spiralis F1 hybrids with asymmetrical hybridization, whereas the Irish ones consisted primarily of polyploid F. vesiculosus.     

Contents of Alginic Acid and Fuccidan in Fucus Algae of the Barents Sea

Seasonal changes in the content of alginic acid and fuccidan have been studied in four species of fucus algae from the Barents Sea: Fucus vesiculosus, F. distichus, F. serratus, and Ascophyllum nodosum. These polysaccharides are accumulated in the biomass of the algae during summer and autumn. To ensure complete processing of fucus algae it is recommended that the raw material be harvested within this period.     

A statistical morphological analysis and taxonomic revision of the genus Xiphophora (Fucaceae)

RICE, E. L., 1989. A statistical morphological analysis and taxonomic revision of the genus Xiphophora (Fucaceae). Xiphophora is a brown seaweed endemic to the cool temperature rocky shores of Australia and New Zealand. The two species, X. chondrophylla and X. gladiata have previously been separated by morphological criteria. However, the differences betweeen them in these characters were largely size-related, resulting in taxonomic confusion. In particular, the presence of X. gladiata in New Zealand has been disputed. In this study, a series of discriminant function analyses were performed, based on a suite of morphological characters collected from each species throughout a major portion of their geographic ranges. The results show conclusively that the present taxonomy of Xiphophora is untenable. This genus is composed of two species, but these are distributed latitudinally (either side of the 40^oS parallel). Each species contains two allopatric subspecies; one in Australia and the other in New Zealand. A formal taxonomic revision of the genus is presented.     

The fast block against polyspermy in fucoid algae is an electrical block

Fertilization potentials in Pelvetia fastigiata, Fucus vesiculosus, and Fucus ceranoides were studied to examine whether eggs of fucoid algae have an electrical block against polyspermy. The resting potential of eggs of all species was about -60 mV, depolarizing, respectively, to -24 +/- 5 mV (SD, n = 9) for 7.5 +/- 2.1 (n = 8) min, -26 +/- 5 (n = 9) mV for 6.4 +/- 2.3 (n = 9) min, and -24 +/- 6 (n = 5) mV for 6.7 +/- 1.9 (n = 4) min. The depolarization was slower, and the fertilization potential was about 10 mV more negative in eggs of both F. vesiculosus and Pelvetia fertilized in 45-mM Na+ ASW; many of these eggs were polyspermic. Steady current was passed through unfertilized eggs of F. vesiculosus prior to insemination to test the potential dependence of fertilization. Eggs (n = 10) bound sperm at all potentials tested (-45 to -23 mV), but fertilization was prevented if eggs were held at potentials more positive than -45 to -37 mV. Eggs underwent a second depolarization if artificially hyperpolarized to potentials more negative than -50 mV immediately after the rise of a normal fertilization potential. Thus, fucoid eggs have an electrical fast block against polyspermy. Only in F. ceranoides does the formation of the cell wall after fertilization appear to be fast enough (i.e., 3-6 min postfertilization versus at 10-15 min in F. vesiculosus and P. fastigiata) to replace the fertilization potential as a polyspermy block. Nonfertilizing fucoid sperm swim away from the egg surface by 1-3 min after rise of the fertilization potential. This suggests that there is another "intermediate block" against polyspermy.     

Galerina Earle: A polyphyletic genus in the consortium of dark-spored agarics

The basidiomycete genus Galerina Earle accommodates more than 300 small brown-spored agarics worldwide, predominantly described from the Northern hemisphere. The delimitation of species and infrageneric units hitherto has been based on morphological and, to some extent, ecological characters. In this study we have analyzed nuclear ribosomal LSU and ITS sequences to reveal infrageneric phylogeny and the phylogenetic placement of Galerina among the dark-spored agarics. Sequences from 36 northern hemisphere Galerina species and 19 other dark-spored taxa were analyzed, some of them obtained from EMBL/GenBank. Our results, received from Bayesian and distance methods, strongly suggest that Galerina is a polyphyletic genus. The LSU analysis shows that Galerina is composed of three or four separate monophyletic main groups. In addition, a few species cluster together with other dark-spored agarics. The same groups are recognized in the ITS tree and they correspond roughly to previously recognized subgenera or sections in Galerina. With high support our LSU analysis suggests that Gymnopilus is a monophyletic genus and that Gymnopilus and one of the Galerina lineages ("mycenopsis") are sister groups. The analyses further indicate that the Galerina lineages, as well as the genus Gymnopilus, could be referred to a strongly emendated family Strophariaceae, which corresponds largely to the family as circumscribed by Kühner (1980). Our results affirm that morphological characters often are highly homoplastic in the agarics. At the present stage formal taxonomic consequences or nomenclatural changes are not proposed.     

DIFFERENCES IN LIFE-HISTORY CHARACTERISTICS ARE CONSISTENT WITH THE VERTICAL DISTRIBUTION PATTERN OF FUCUS SERRATUS AND FUCUS VESICULOSUS (FUCALES, PHAEOPHYCEAE) IN THE CENTRAL BALTIC SEA

On the rocky shores of southeast Sweden, in the central Baltic Sea, the brown seaweed species Fucus serratus L. and Fucus vesiculosus L. form dense constantly submerged stands. The relative proportion of the two species in the belt is shifting both vertically and geographically. Our hypothesis is that differences in life-history characteristics and the tolerance to physical factors such as wave force, freezing, and light may alter the competitive outcome between the two species with increasing wave exposure. This study included a combination of field studies and laboratory experiments. In sheltered locations, F. serratus and F. vesiculosus grow in mixed stands from 0.5 to 3 m deep, whereas at exposed sites F. vesiculosus grow from 0.5 to 2 m deep and F. serratus mainly from 1 to 5 m deep. The two Fucus species differed markedly in their tolerance to physical stress as well as in a number of reproductive and vegetative characteristics. Tolerance to freezing and wave action was higher in F. vesiculosus compared with F. serratus . Fucus vesiculosus also produced 10 times more eggs per receptacle, allocated significantly more tissue per frond for reproduction, and produced more reproductive fronds per individual than did F. serratus . In addition, the survival rate of F. vesiculosus germlings was slightly higher than that of F. serratus germlings during the first year. These differences in life history characteristics are suggested to partly explain the observed distribution patterns of the two Fucus species in the Baltic Sea.     

Arsenic binding to Fucus vesiculosus metallothionein

The seaweed Fucus vesiculosus is a member of the brown algae family. Kille and co-workers [Biochem. J. 338 (1999) 553] reported that this species contains the gene for metallothionein. Metallothionein is a metalloprotein having low molecular weight, and high cysteine content, which binds a range of metals. F. vesiculosus bioaccumulates arsenic from the aquatic environment [Mar. Chem. 18 (1986) 321]. In this paper we describe arsenic binding to F. vesiculosus metallothionein, characterized by electrospray ionization mass spectrometry. Five arsenic-MT species were detected with increasing As to protein ratios. These results provide important information about the metal-chelation behaviour of this novel algal metallothionein which is a putative model for arsenic binding to F. vesiculosus in vivo.     

Genetic entities and mating system in hermaphroditic Fucus spiralis and its close dioecious relative F. vesiculosus (Fucaceae, Phaeophyceae)

To date, molecular markers have not settled the question of the specific status of the closely related, but phylogenetically unresolved, brown seaweeds, hermaphroditic Fucus spiralis and dioecious Fucus vesiculosus, nor their propensity for natural hybridization. To test the degree of species integrity and to assess effect of the mating system on the population genetic structure, 288 individuals coming from parapatric (discontinuous) and sympatric (contiguous) spatial configurations at two sites were genotyped with five microsatellite loci. Using a Bayesian admixture analysis, our results show that F. spiralis and F. vesiculosus comprise clearly distinct genetic entities (clusters) generally characterized by cosexual and unisexual individuals, respectively. Genetic diversity within each entity suggests that F. spiralis reproduces primarily through selfing while F. vesiculosus is characterized by an endogamous breeding regime. Nevertheless, aberrant sexual phenotypes were observed in each cluster, no diagnostic alleles were revealed and 10% of study individuals were intermediate between the two genetic entities. This pattern can be explained by recent divergence of two taxa with retention of ancestral polymorphism or asymmetrical, introgressive hybridization. However, given (i) coincident monomorphism at three loci in spiralis clusters and (ii) that significantly more intermediates were observed in sympatric stations than in parapatric stations, we argue that interspecific gene flow has occurred after divergence of the two taxa. Finally, we show that whether recently separated or recently introgressive, the divergent breeding systems probably contribute to species integrity in these two taxa.     

The Systematic Position of Beesia: Evidence from ITS (nrDNA) Sequence Analysis

Discussed in the present paper is the systematic position of Beesia, a small ranunculaceous genus mainly distributed in SW China. Sequences of the internal transcribed spacers (ITS) and 3’ end of 5.8 S rRNA gene of Beesia calthifolia, Trollius chinensis, Cimicifuga acerina, C. brachycarpa and Actaea asiatica were determined by direct PCR sequencing method. The sequences of ITS-1 in the five species range from 225 bp to 232 bp in size and those of ITS-2 from 201 bp to 217 bp. Beesia is very similar to Cimicifuga and Actaea not only in size, sequence and G+C content of ITS, but also in sequence of 3’ end of 5.8 S rRNA gene. In PAUP analysis, Ranunculus enysii was used as outgroup, and the most parsimonious tree was obtained through exhaustive search. The gaps were treated respectively as missing characters and the fifth base in two analyses. The two analyses show that a monophyletic group comprising Beesia calthifolia, Cimicifuga acerina, C. brachycarpa and Actaea asiatica is strongly supported by the bootstrap value. In the monophyletic group, Beesia calthifolia is basal to the other three species. The present DNA sequence analysis demonstrates that the genus Beesia should be placed in the tribe Cimicifugeae, which is consistent with the results from phytochemistry, palynology and cytology. In addition, Beesia may be the most original genus in the tribe Cimicifugeae in view of simple leaf,apetalous flower and molecular evidence.     

A comprehensive phylogeny of the Phaeophyceae based on nrDNA sequences resolves the earliest divergences

The present study is the first comprehensive phylogeny of the class of the Phaeophyceae. For 67 species representing all orders of the class, the sequences of the 3'-end of the small and the 5'-end of the large subunit nrRNA genes were aligned and analysed. A further analysis based on sequences of the 3'-end of the small and of the complete sequences of the 28S gene of the large subunits was also performed, but for only eight taxa. In both analyses, Tribonema marinum (Xanthophyceae) was used as outgroup. The analyses showed the Dictyotales as diverging first, followed by the Sphacelariales, then the Syringodermatales. Most of the orders currently accepted were confirmed as monophyletic groups but the Laminariales and Tilopteridales remained polyphyletic. The relationships of the remaining orders to each other were not resolved with the present data set. Ascoseira, included for the first time in a molecular study, appeared as a separate lineage without any clear relationship with other algae possessing conceptacles (Splachnidium and Fucales). Algae with stellate plastids, never studied in a global context, were polyphyletic; this result is consistent with their plastid ultrastructure and is discussed in detail. As further result of the present study, the South African genus Bifurcariopsis appeared as the sister taxon of the North Atlantic genus Himanthalia, and Xiphophora appeared as the sister taxon of Hormosira rather than as a member of the Fucaceae; the taxonomic position of these genera is discussed.     

Berkleasmium crunisia sp. nov. and its phylogenetic affinities to the Pleosporales based on 18S and 28S rDNA sequence analyses

Berkleasmium crunisia sp. nov. is described from a decaying rachis of Calamus sp. (Arecaceae) from Khuan Ka Long, Satun Province, Thailand. This Berkleasmium species differs morphologically from other species in possessing subtending cells and larger conidia. The phylogenetic relationship of the genus Berkleasmium among sexual ascomycetes also was examined. Sequence analyses from 18S, 28S and ITS-5.8S rDNA were analyzed phylogenetically under maximum parsimony, Bayesian and neighbor joining criteria. Phylogenies revealed that Berkleasmium is not monophyletic. Berkleasmium micronesicum and B. nigroapicale are related to Westerdykella cylindrica and Sporormia australis, which are members of the family Sporormiaceae (Pleosporales). Other species, including our new taxon, appear to share phylogenetic affinities with other anamorphic fungi, whose classification within the Pleosporales is still obscure. Analyses of 18S, 28S, ITS (+5.8S) rDNA and combined (18S+28S) gene sequences fail to give sufficient phylogenetic resolution within the Pleosporales.     

Factors controlling the upper limits of fucoid algae on the shore

Year-round observations on the condition of intertidal seaweeds growing in situ on the shore, show that the upper limits of the zones characterized by Pelvetia canaliculata (L.) Done et Thur., Fucus spiralis L. and Ascophyllum nodosum (L.) Le Jol. were periodically pruned back by environmental conditions. The uppermost plants of each species showed clear signs of tissue damage 21 to 28 days after a time when drying conditions coincided with neap tides which exposed the plant to aerial conditions for long periods. High air temperatures aggravated the damage, but neither frost nor prolonged rain had any obvious adverse effects. On spring tides the plants were wetted every day and no damage resulted regardless of the weather.These species clearly all reach up to their physiological limits on the shore investigated, but presumably Fucus vesiculosus L. and F. serratus L. do not, for they were never observed to show signs of tissue damage attributable to exposure to air. Transplant experiments did, however, prove that F. serratus cannot survive in the F. spiralis zone and nor can F. spiralis persist in the Pelvetia canaliculata zone.Laboratory experiments also demonstrated that the ability to tolerate desiccation and then to resume photosynthesis and growth when re-submerged was greatest in P. canaliculata, the species found highest on the shore, and was progressively less in species inhabiting successively lower levels.     

Sequence Analysis of the ITS Region of Nuclear Ribosomal DNA (nrDNA) in Chinese Amaranthus and Its Systematic Utility

The sequences of the ITS region (including ITS-1, 5.8S rDNA and ITS-2) of nuclear ribosomal DNA from 15 species of the genus Amaranthus L. and outgroup Celosia cristata L. were determined. The result shows that the size of the ITS region of Amaranthus is from 629 to 632 bp, and the length variation is only found in ITS-1 (250-253 bp). On the basis of phylogenetic analysis of nucleotide sequences, the Amaranthus species in China may be devided into three sections, viz., sect. Spinosus, sect. Amaranthus and sect. Paucestamen; the cultivated species, viz., Amaranthus paniculatus L., A. cruentus L., A. caudatus L. and A. hypochondriacus L. can be treated as the subsp. of A. hybridus L.; A. taishanensis F.Z.Li and A. tenuifolius Willd are both closely related to species in the sect. Paucestamen. The study also indicated that the number of stamens has more phylogenetic information than other characters, such as the number of sepals and dehiscence/indehiscence of fruits in Amaranthus.