Morphological review ofPelvetia andSilvetia (Fucaceae, Phaeophyta) with an emphasis on phylogenetic relationships

We compared the morphology of all four members ofPelvetia andSilvetia (Fucaceae, Phaeophyta), with an emphasis on phylogenetic relationships.Silvetia is segregated fromPelvetia because it has two, longitudinally divided eggs in the oogonium. In contrast, the eggs of the genusPelvetia are transversally divided. A cladistic analysis, based on 17 morphological features, shows thatPelvetia is closely related toHesperophycus andPelvetiopsis, as are three species ofSilvetia. We can infer from the cladistic tree and biogeographic information that some silvetian ancestor populations from the northern Pacific region likely evolved toS. babingtonii in northern Japan and then moved to Korea and California (USA), whereS. siliquosa andS. compressa, respectively, diverged. Our morphological study corroborates the DNA-based phytogeny and the ensuing taxonomy for the two genera. These results demonstrate the necessity for systematically revising the family Fucaceae to emphasize egg development, rather than egg number, in the oogonium, as a diagnostic character.     

The comparison of seed proteins of several representatives of the genusPisum with respect to their relationships An immunological comparison

Using immunochemical methods a comparison was made of a complex of water soluble (albumins) and salt soluble (globulins) seed proteins, especially vicilin and legumin, in selected species of the genusPisum, to determine the degree of their taxonomic relationship. Within the genusPisum the interspecific differences betweenP. abyssinicum, P. cinereum,P. elatius, P. fulvum, P. sativum, andP. syriacum are much smaller, and thus the taxonomic distances are shorter than is the casee.g. in the genusPhaseolus. In spite of this fact one may state thatPisum sativum, P. elatius andP. syriacum constitute a definite group, whereasP. abys-sinicum, P. cinereum and P.fulvum have longer taxonomic distances.     

Nitrite utilization byBrettanomyces

The utilization of nitrite was tested in a number ofBrettanomyces strains which fail to utilize nitrate as sole source of nitrogen. It was established that some of these strains utilize nitrite. The taxonomical implications of this phenomenon are discussed and it is concluded that neither nitrate nor nitrite utilization serves any purpose for the delimitation of species within the genusBrettanomyces. The possibility of a phylogenetic relationship betweenBrettanomyces andHanseniaspora is discussed.     

Synonomy of the yeast generaHansenula andPichia demonstrated through comparisons of deoxyribonucleic acid relatedness

The relationship between the generaHansenula andPichia was examined through comparisons of DNA relatedness among phenotypically similar species.Hansenula minuta andPichia lindneri showed 75% DNA base sequence complementarity. In other comparisons,H. nonfermentans was found to share nearly 50% of its DNA sequences with bothH. minuta andP. lindneri. Because of the high degree of relatedness observed, it is proposed that ability to assimilate nitrate, the sole distinction betweenHansenula andPichia, is of insufficient taxonomic value for the reliable separation of either species or genera. Hat-spored species ofHansenula H. et P. Sydow 1919 are being transferred toPichia Hansen 1904. Species ofHansenula andPichia with Saturn-shaped ascospores will be transferred to the genusWilliopsis. The mention of firm names or trade products does not imply that they are endorsed or recommended by the U.S. Department of Agriculture over other firms or similar products not mentioned.     

Reanalysis of 5S rRNA sequence data for the Vibrionaceae with the clustan program suite

A pooled data set of Gram-negative eubacterial, mainly Vibrionaceae, 5S rRNA sequences from MacDonell and Colwell [15] and from Erdmann et al. [10] was processed by single, average, and complete linkage procedures, as generated by theclustan program suite [23]. The hierarchical structures produced broadly resembled those for the published data: the resolution of the new genusShewanella MacDonnell and Colwell 1985 [15] and an expanded definition forPhotobacterium are supported. The new phenon representingListonella [15] was not resolved, but the related speciesVibrio mimicus andV. cholerae were linked by one procedure. It is suggested that recognition of synonymy betweenPhotobacterium angustum andP. leiognathi and the incorporation ofV. anguillarum, V. damsela, andV. pelagius into the new genusListonella be held in abeyance pending supporting evidence. It is concluded that this widely available program produces analyses of 5S rRNA sequences of quality comparable to more specialized packages.     

The phylogenetic position of the endemic flat-needle pinePinus krempfii (Pinaceae) from Vietnam, based on PCR-RFLP analysis of chloroplast DNA

Pinus krempfii is morphologically very unique as compared to otherPinus species by having flat leaf-like needles. Its taxonomic position has been problematic ever since its discovery. In this study, an attempt was made to infer the taxonomic status ofP. krempfii through restriction fragment length polymorphism analysis of 12 PCR amplified chloroplast (cp) DNA regions. Phylogenetic analysis was conducted using 10 representatives of the twoPinus subgenera:Strobus andPinus. In addition, to infer the position ofP. krempfii in Pinaceae in relation with other genera, 14 representatives of eight additional genera were included in the analysis. Our cpDNA-based results indicate that: 1)P. krempfii clearly belongs to the genusPinus. This result does not favour the creation of a new genusDucampopinus in Pinaceae for this taxon. 2) Within the genusPinus, P. krempfii is more allied with species in subgenusStrobus and differs distinctly from species in subgenusPinus. 3) Despite the similarity in certain morphological and anatomical leaf and wood characters toKeteleeria andPseudolarix, the cpDNA data do not support the hypothesis for close relationship betweenP. krempfii and these two genera.     

Protein polymorphism inEligmodontia typus. Genetic divergence with other phyllotine cricetids

By means of gel electrophoresis of tissue extracts we have studied protein polymorphism inEligmodontia typus. The analysis was performed on specimens from five population samples collected at different sites in Patagonia (Argentina). Mean heterozygosity (\-h) and proportion of polymorphic loci (P) were determined on the basis of 19 loci. Considering all individuals as one sample, \-h gave a value of 0.16 and P was 70%. Although these values are much higher than those reported for most rodent species, they are very similar to those obtained by us for four species of the genusCalomys and forGraomys griseoflavus. There is a striking genetic identity (I_N=0.99) among populations from regions with different environmental conditions, indicating that the species possesses a common genic pool. Genetic distance with other species of the Phyllotini was estimated. D_N was lower betweenE. typus andCalomys (mean D_N=0.88) than betweenE. typus andGraomys griseoflavus (D_N=1.01). The high morphological similarity between these last two species, especially regarding those characters related to desert life adaptation, could be assigned, at least in part, to convergent evolution.     

Der Lebenszyklus vonPorphyrostromium obscurum (Bangiophyceae,Rhodophyta)

Studies on the sexuality and the heteromorphous life cycle ofErythrotrichia ciliaris provided decisive criteria for the establishment of the genusErythrotrichopeltis (Kornmann, 1984). This genus was transferred by Wynne (1986) toPorphyrostromium Trevisan 1848. In the present studyErythrotrichia obscura, the original species of Berthold's (1882) classical observations on the sexuality of this genus, is incorporated toPorphyrostromium. Previously regarded as synonyms,Porphyrostromium ciliare (Carm. ex Harv.) Wynne andP. obscurum (Berth.) nov. comb. proved to be distinct species, differing both in the filamentous and in the peltoid phases of their life cycle. The relationship betweenP. ciliare andP. boryanum (Montagne) Trevisan, type species of the genus, may only be elucidated by future investigations on the basis of field collected material.      

Three new species of anamorphic yeasts phenotypically and phylogenetically related toCandida mesenterica: The description ofCandida fungicola sp. nov.,Candida sagamina sp. nov., andCandida fukazawae sp. nov. isolated from fruit bodies of mushrooms

Four strains of anamorphic yeasts isolated from fruit bodies of mushrooms collected in Japan were found to represent three new species of the genusCandida. These species resembleCandida mesenterica in characteristics commonly employed in the classification of yeasts. On the basis of DNA-DNA reassociation, however, they were clearly distinguished fromC. mesenterica and from one another. Three new species,Candida fungicola, Candida sagamina, andCandida fukazawae, are proposed for these yeasts. The analysis of SSU rDNA sequences suggested that these three species were closely related to each other and toC. mesenterica andC. suecica.     

The generic classification of Fayum anthropoidea

The early anthropoid species initially described asAegyptopithecus zeuxis Simons, 1965, from the Oligocene of Egypt, although retained by many authors in the monotypic genusAegyptopithecus, has been lumped by others into the genusPropliopithecus. Similarly, the species originally described asParapithecus grangeri Simons, 1974, has been ranked by some authors in a monotypic genusSimonsius, while others retain it inParapithecus. Criteria to be considered in resolving these taxonomic debates are (1) the adequacy and consistency of proposed morphological differences between species; (2) analogy with the degree of morphological variation tolerated within extant genera; and (3) nomenclatural conservatism. A philosophy that would require strict monophyletic classification is of insufficient practical value for assessing the validity of Fayum genera. Characters cited as distinguishing vetweenAegyptopithecus andPropliopithecus, and betweenSimonsius andParapithecus, are reviewed and evaluated. The results indicate thatA. zeuxis is generically distinct from species ofPropliopithecus, based on differences in the crown structure and proportions of the molars.Pa. grangeri cannot be shown to differ at the generic level from the type and only known specimen ofPa. fraasi, thus establishing Simonsius as a junior synonym ofParapithecus.     

Geographic occurrence of intermediate type between<Emphasis Type="Italic"> Castanopsis sieboldii</Emphasis> and<Emphasis Type="Italic"> C. cuspidata</Emphasis> (Fagaceae) based on the structure of leaf epidermis

The number of layers of epidermis in the leaves is used as a criterion to distinguish between Castanopsis sieboldii (two layers) and C. cuspidata (one layer). An intermediate type, which has one and two layers within a single leaf, is frequently seen in the field. The origin of the intermediate type has been supposed to be a hybrid between C. sieboldii and C. cuspidata. If the intermediate type is produced by hybridization, we expect that the F₁ seedlings of the intermediate type should occur in the co-occurrence area of those two species. To clarify the geographic occurrence of the intermediate type, we collected nuts of 443 mother trees from throughout the distribution area of the genus Castanopsis in Japan. A total of 7,260 seedlings germinated from these nuts were examined as to their leaf structure. The seedlings of the intermediate type occurred not only in the area where C. sieboldii and C. cuspidata coexisted, but also in the area where only C. sieboldii grows. The leaf structure of intermediate seedlings was independent of the traits of mother trees. These findings suggest that the intermediate seedlings that occurred in the area where only C. sieboldii grows are not hybrid between C. sieboldii and C. cuspidata but are a morphological variation of C. sieboldii. The difference in the structure of leaf epidermis is not always appropriate for the identification of the hybrid.     

Evidence for interspecific transfer of the transposable element mariner betweenDrosophila andZaprionus

Summary The transposable element mariner occurs widely in themelanogaster species group ofDrosophila. However, in drosophilids outside of themelanogaster species group, sequences showing strong DNA hybridization with mariner are found only in the genusZaprionus. the mariner sequence obtained fromZaprionus tuberculatus is 97% identical with that fromDrosophila mauritiana, a member of themelanogaster species subgroup, whereas a mariner sequence isolated fromDrosophila tsacasi is only 92% identical with that fromD. mauritiana. BecauseD. tsacasi is much more closely related toD. mauritiana than isZaprionus, the presence of mariner inZaprionus may result from horizontal transfer. In order to confirm lack of a close phylogenetic relationship between the genusZaprionus and themelanogaster species group, we compared the alcohol dehydrogenase (Adh) sequences among these species. The results show that the coding region of Adh is only 82% identical betweenZ. tuberculatus andD. mauritiana, as compared with 90% identical betweenD. tsacasi andD. mauritiana. Furthermore, the mariner gene phylogeny obtained by maximum likelihood and maximum parsimony analyses is discordant with the species phylogeny estimated by using the Adh genes. The only inconsistency in the mariner gene phylogeny is in the placement of theZaprionus mariner sequence, which clusters with mariner fromDrosophila teissieri andDrosophila yakuba in themelanogaster species subgroup. These results strongly suggest horizontal transfer.     

Biochemical diversity and genetic distance in two species of the genusSaguinus

A comparative study of 20 blood genetic systems was performed on three populations of genusSaguinus: S. fuscicollis weddelli, S. midas niger, andS. midas midas. Some markers are useful for the characterization of the two species.ADA ⁵, ADA⁶, CA2³, CA2⁴, andES2 ² occur only inS. fuscicollis whileADA ⁴is fixed inS. midas. S. midas midas showed heterozygosity value comparable to those previously obtained for the genusAlouatta. Estimates of genetic distance betweenS. fuscicollis andS. midas species of about 14% are in accordance with those referred to in the literature for interspecific differences. Genetic distances between subspecies ofSaguinus midas were nearly 3%, which is within the range for subspecies.     

A phylogenetic dissection of the family micrococcaceae

A comparative analysis of 16S ribosomal RNA sequences in the Micrococcaceae shows the family not to be a phylogenetically coherent unit. In fact, at least two of its three genera are themselves not valid phylogenetic units. Species, of the genusMicrococcus are phylogenetically inseparable from those ofArthrobacter. The genusPlanococcus groups specifically with certain members ofBacillus, andStaphylococcus is also related to the genusBacillus, though more peripherally. These findings question the validity of spherical shape as a valid indicator of phylogenetic relationships on all but the lowest levels.     

The genusSaccharomyces (Meyen) Reess

Twenty-nine different strains of several fermentation type II species of the genusSaccharomyces, whose main common characteristic was complete fermentation of raffinose, were studied. These can be regarded as the most highly developed species of the genusSaccharomyces. Their common and differential morphological, physiological, biochemical and serological characteristics were studied. In addition to the usual criteria, factors which played a role in the history and formation of these species were taken into account. Large species were compared with typical strains chosen on the basis of statistical typing, e.g.Saccharomyces carlsbergensis Hansen, and small species were compared with type strains, e.g.Saccharomyces logos van Laer et Den. andSaccharomyces uvarum Beijer, as nomenelatural types. It was found that the whole group could be divided into two categories, one grouped roundSaccharomyces carlsbergensis Hansen and the other roundSaccharomyces uvarum Beijer., which overlapped at the place occupied bySaccharomyces logos van Laer et Den. Another group of intermediate strains isolated from grapes came betweenSaccharomyces logos andSaccharomyces uvarum. In future, closer attention will have to be paid to strains which do not give a serological reaction with serum against the typical speciesSaccharomyces carlsbergensis, i. e. to the speciesSaccharomyces monacensis Hansen andSaccharomyces mandshuricus Saito.     

Reevaluation of the taxonomy ofVibrio,beneckea, andPhotobacterium: Abolition of the genusBeneckea

As a result of studies on the evolution of glutamine synthetase and superoxide dismutase, the genusBeneckea has been abolished and its constituent species, along withPhotobacterium fischeri andP. logei, assigned to the genusVibrio. The definitions ofVibrio andPhotobacterium have been modified accordingly.     

Hybridization studies in the genusSilene sectt.Siphonomorpha andAuriculatae (Caryophyllaceae)

Ten species in the genusSilene sectt.Siphonomorpha andAuriculatae were crossed artificially involving 612 crosses to test inter- and infraspecific, intervarietal and intersectional crossability. In sect.Siphonomorpha all interspecific crosses (between diploids) failed due to cross- or seed-incompatibility; however, intervarietal crosses betweenS. gigantea var.gigantea andS. gigantea var.incana produced hybrids. In sect.Auriculatae hybrids were produced betweenS. vallesia andS. boryi, both tetraploids, but crosses between these and the diploid species were unsuccessful. The delimitation and status of the species in both sections was supported by the crossing results.     

Die GattungKarschia — Bindeglied zwischen bitunicaten Ascomyceten und lecanoralen Flechtenpilzen?

The genusKarschia, in the earlier sense, including saprophytes and parasites on lichens, has been thought to be a non-lichenized parallel genus of the lichen genusBuellia. Modern workers included it on the one hand inBuellia, on the other hand combined it with bitunicate ascomycetes. It is now proved thatKarschia is heterogeneous and contains but superficially similar members both of the genusBuellia of theLecanorales and of typical or masked bitunicateAscomycetes. Therefore, it can not be regarded as a link betweenLecanorales andDothideales. The type species ofKarschia belongs to theDothideales.

     

Phylogenetic and evolutionary relationships between<Emphasis Type="Italic"> Elymus humidus</Emphasis> and other<Emphasis Type="Italic"> Elymus</Emphasis> species based on sequencing of non-coding regions of cpDNA and AFLP of nuclear DNA

Species of the genus Elymus are closely related to some important cereal crops and may thus serve as potential alien genetic resources for the improvement of these crops. E. humidus is indigenous to Japan and is well adapted to a humid climate. However, the phylogenetic and evolutionary relationships between E. humidus and other Elymus species are unclear. To elucidate these relationships, we examined the sequences of three non-coding regions of chloroplast DNA (cpDNA) and the amplified fragment length polymorphism (AFLP) variation of nuclear DNA in E. humidus and other related species. A total of 15 sequence mutations from the three non-coding regions, trnL-trnF, trnF-ndhJ(C), and atpB-rbcL, covering approximately 1,800 bp, were detected in the Elymus species. A phylogenic tree resulting from the cpDNA sequence data revealed that all the species containing the St nuclear genome (St, StH, StY, and StHY) formed a well-supported clade that is remote from the Hordeum species (H). This result strongly supports the finding that Pseudoroegneria is the maternal genome donor to the genus Elymus. In addition, E. humidus showed the closest relationship with the cpDNA genome of the Pseudoroegneria species. The AFLP analysis detected 281 polymorphic bands with 11 AFLP primer combinations. The AFLP result showed that E. humidus is relatively closer to E. tsukushiensis. However, the cpDNA sequencing results indicated that E. humidus and E. tsukushiensis have different cytoplasmic origins. Our results suggest that the evolutionary process between E. humidus and E. tsukushiensis is not monophyletic, although the two species have similar morphological characters and adaptability.Communicated by J. Dvorak     

Phylogenetic analysis of ten black yeast species using nuclear small subunit rRNA gene sequences

The nuclear small subunit rRNA genes of authentic strains of the black yeastsExophiala dermatitidis, Wangiella dermatitidis, Sarcinomyces phaeomuriformis, Capronia mansonii, Nadsoniella nigra var.hesuelica, Phaeoannellomyces elegans, Phaeococcomyces exophialae, Exophiala jeanselmei var.jeanselmei andE. castellanii were amplified by PCR and directly sequenced. A putative secondary structure of the nuclear small subunit rRNA ofExophiala dermatitidis was predicted from the sequence data. Alignment with corresponding sequences fromNeurospora crassa andAureobasidium pullulans was performed and a phylogenetic tree was constructed using the neighbor-joining method. The obtained topology of the tree was confirmed by bootstrap analysis. Based upon this analysis all fungi studied formed a well-supported monophyletic group clustering as a sister group to one group of the Plectomycetes (Trichocomaceae and Onygenales). The analysis confirmed the close relationship postulated betweenExophiala dermatitidis, Wangiella dermatitidis andSarcinomyces phaeomuriformis. This monophyletic clade also contains the teleomorph speciesCapronia mansonii thus confirming the concept of a teleomorph connection of the genusExophiala to a member of the Herpotrichiellaceae. However,Exophiala castellanii did not belong to this clade. Therefore, this species is not the anamorph ofCapronia mansonii as it was postulated.