湛江硇洲岛海葵相关可培养细菌系统发育多样性

【目的】了解湛江硇洲岛海葵样品中相关可培养细菌的多样性。【方法】运用纯培养法和基于16S rRNA基因序列的系统发育分析对样品中可培养细菌多样性进行研究。【结果】用补充0～2.0 mol/L NaCl 的MA、ISP 2、NA、SWA和HAA培养基从海葵样品中分离到126株细菌,通过形态观察和部分生理生化实验去冗余,选取42株具有代表性的菌株进行基于16S rRNA基因序列的系统发育多样性分析。结果表明,42个分离菌株可分为25个物种,属于3个大的系统发育类群(Firmicutes,Gamma-Proteobacteria,Actinobacteria)、11个科、18个属。多数菌株属于Firmicutes门（17株,40.5％）和Gamma-Proteobacteria亚门（14株,33.3％）。这些分离菌株中,至少有6个菌株可能代表6个不同属的6个新物种：JSM 071004、JSM 071068、JSM 071073、JSM 072002、JSM 073008和JSM073097分别代表Bacillus、Halobacillus、Piscibacillus、Pontibacillus、Alteromonas和Nocardiopsis属的新物种。【结论】从以上结果可以看出,湛江硇洲岛海葵中存在较为丰富的微生物物种多样性和系统发育多样性,并且潜藏着较多的新的微生物类群（物种）。     

美洲大蠊成虫肠道可培养细菌多样性研究

【目的】了解美洲大蠊成虫肠道可培养细菌的多样性。【方法】运用纯培养法、数值分类和16S rRNA基因序列的系统发育分析对样品中可培养细菌多样性进行研究。【结果】从NA培养基中分离得到54株细菌,根据形态观察和部分生理生化特性,选取32个代表性菌株进行16S rRNA基因序列的系统发育多样性分析。结果表明,数值分类中的代表菌株在82%相似水平上可分为12个表观群;这些分离菌株代表20个物种,属于4个大的系统发育类群(Proteobacteria,Bacteroidetes,Firmicutes,Actinobacteria)的10个科、15个属。多数菌株属于Proteobacteria门(15株,占46.9%)和Bacteroidetes门(10株,占31.3%)。【结论】美洲大蠊成虫肠道内存在较为丰富的细菌多样性。     

小溪自然保护区非盐环境土壤中嗜盐和耐盐菌多样性

【目的】研究湖南小溪国家级自然保护区普通非盐环境(ordinary non-saline environment)土壤样品中可培养嗜盐及耐盐细菌(含放线菌)多样性。【方法】采用纯培养法和基于16S rRNA基因序列的系统发育分析对样品中嗜盐及耐盐细菌多样性进行研究。【结果】用补充5%-20%(w/v)NaCl的MA、ISP2、ISP5、NA和HAA培养基从土壤样品中分离到114株细菌,其中8株为中度嗜盐菌,19株为轻度嗜盐菌,87株为耐盐菌。根据形态观察和部分生理生化实验结果去冗余,选取61个代表性菌株进行基于16S rRNA基因序列的系统发育多样性分析。结果表明,这些菌株属于细菌域(Bacteria)的3个大的系统发育类群(门;phylum)(Actinobacteria,Firmicutes,Proteobacteria)的16个科、18个属,代表了41个物种。多数菌株属于Firmicutes门(38株,62.3%)和Actinobacteria门(18株,29.5%)。大多数菌株与其系统发育关系最密切的已知物种的典型菌株之间存在一定的遗传差异(16S rRNA基因序列相似性为96.9%-99.8%),其中有7个菌株(JSM070026,JSM081004,JSM081006,JSM081008,JSM083058,JSM083085,JSM084035)代表7个潜在新种(potential novel species)。【结论】研究结果表明,湖南小溪国家级自然保护区普通非盐环境土壤中存在较为丰富的可培养嗜盐及耐盐细菌多样性,并且潜藏着较多新的微生物类群(物种)。     

第六次北极科学考察海洋沉积物可培养细菌的多样性分析

【目的】研究北极海洋沉积物可培养细菌的菌种资源多样性。【方法】采用海水Zobell2216E培养基和涂布平板法对第六次北极科学考察获得的海洋沉积物开展细菌分离培养,通过16S rRNA基因系统发育分析了解可培养细菌的多样性。【结果】根据菌落形态特征,从40个站位的北极海洋沉积物样品中共分离并获得16S rRNA基因有效序列的细菌达445株;基于16S rRNA基因的相似性分析与系统发育研究结果表明,分离获得的细菌分属于细菌域的4个门、6个纲、13个目、28个科、49个属、91个种,其中γ-Proteobacteria占大多数;有12株与模式菌株的16S rRNA基因序列相似性小于97%,可能代表了6个潜在的细菌新物种;此次获得的细菌种类组成与以往第五次北极科考获得的相比,在属水平上差异较大。【结论】北极海洋沉积物中存在着丰富的微生物菌种资源,具有很多新型微生物仍未被发现,是亟待开发的微生物资源宝库。     

艾丁湖沉积物放线菌多样性

摘要: 【目的】为了研究新疆艾丁湖低海拔、高盐环境中的放线菌多样性。【方法】本研究应用基于16S rRNA基因序列系统发育分析的免培养方法和选择性分离培养方法相结合的方式对艾丁湖沉积物样品进行放线菌多样性分析。利用放线菌特异性引物扩增16S rRNA 基因并构建了16S rRNA 基因克隆文库,对文库中的插入序列进行RFLP( Restriction Fragment Length Polymorphism 限制性片段长度多态性) 分析。采用不同盐浓度的9 种选择性培养基分离样品中的放线菌。【结果】通过对     

比什凯克盐碱土壤可培养细菌的多样性

【目的】通过对吉尔吉斯共和国比什凯克地区一处盐碱土壤样品可培养细菌的分离筛选,初步了解该地区土壤微生物生理多样性和系统发育多样性。【方法】利用加盐(NaCl 5%)的R2A、TSB、1/4×NA和Gause No.1培养基筛选耐盐碱菌株。对部分分离菌株的革兰氏染色、耐盐性、生长温度范围、pH耐受、产酶性能进行了比较,进而采用核糖体DNA扩增片段限制性酶切分析(ARDRA)研究了比什凯克地区耐盐碱细菌的群落结构和多样性。【结果】从比什凯克地区盐碱土样中分离得到120株耐盐碱细菌,通过限制性内切酶Hae III对纯化菌株的16S rRNA基因进行酶切分型,根据ARDRA的酶切图谱,将其划分为19个操作分类单元。16S rRNA基因序列测定和系统发育分析结果显示,分离菌株分布于厚壁菌门、放线菌门、变形菌门下的17个种属,且部分菌株的16S rRNA基因序列同源性低于97%,可能是潜在的新种。【结论】比什凯克地区盐碱土样中的耐盐碱细菌不仅具有丰富的多样性,还蕴藏着具有地域特点的新菌种资源。     

天山冻土产低温脂肪酶菌株的筛选及其多样性分析

【目的】通过天山冻土细菌的分离和产低温脂肪酶菌株的筛选,了解天山冻土微生物的物种多样性和产脂肪酶菌株的系统发育多样性,为高效低温脂肪酶生物技术奠定基础。【方法】采用稀浓度的R2A、TSB平板涂布分离天山冻土中可培养细菌,通过选择性培养基筛选产低温脂肪酶的菌株。采用细菌常规生理生化实验、最适生长温度、耐盐性、产酶性能对分离菌株的生理学进行研究,通过16S rRNA基因序列分析确定产脂肪酶菌种的系统进化地位,通过BOX-PCR指纹技术对16S rRNA基因高度同源性的菌株进一步区分。【结果】分离筛选到78株可培养低温菌,选择培养基显示有17株可产低温脂肪酶,其中8株在两种选择培养基中均可产脂肪酶和酯酶。17株产酶菌分别隶属于5个系统发育类群、6个属,其中假单胞菌属(Pseudomonas)占大多数(58.9%)。【结论】天山冻土中产低温脂肪酶的细菌具有较丰富的系统发育多样性,依据生长温度,均属于耐冷菌。     

南海硇洲岛潮汐带栉江珧可培养细菌的系统发育多样性

【目的】研究南海硇洲岛潮汐带栉江珧(Atrina pectinata)样品相关可培养细菌的多样性。【方法】采用纯培养法和基于16S r RNA基因序列的系统发育分析,法对样品中可培养细菌(含放线菌)的类群多样性、物种多样性和遗传多样性进行研究。【结果】用补充0–25%(质量体积比)Na Cl的MA、MH和NA培养基从栉江珧样品中分离到125株细菌。在形态观察和部分生理生化实验结果的基础上去冗余,选取90个代表性菌株进行基于16S r RNA基因序列的系统发育多样性分析。结果表明,这90个分离菌株分属于3个大的系统发育类群(Gamma-proteobacteria、Firmicutes、Actinobacteria)、6个科、10个属,可分为33个物种。优势类群为厚壁菌门(Firmicutes)(56株,62.2%)和γ-变形杆菌亚门(Gamma-proteobacteria)(31株,34.5%)。大多数菌株与其系统发育关系最密切的已知物种的典型菌株之间存在一定的遗传差异(16S r RNA基因序列相似性为95.7%–99.9%),其中有5株可能代表新的分类单元(Potential new taxa)。分析表明,菌株JSM 112024可能代表了盐单胞菌科(Halomonadaceae)的一个属一级新分类单元;菌株JSM 112019、JSM 114045、JSM 114058和JSM 114083可能分别代表盐弧菌属(Salinivibrio)、芽孢杆菌属(Bacillus)、盐单胞菌属(Halomonas)和枝芽孢菌属(Virgibacillus)的新物种。【结论】湛江硇洲岛潮汐带栉江珧中存在较为丰富的可培养细菌物种多样性和系统发育多样性,并潜藏着较多的新微生物类群(物种)。     

九香虫(椿象)体内可培养细菌的多样性分析

【目的】认识药用昆虫九香虫(Aspongopus chinesis Dallas)成虫体内可培养细菌资源多样性。【方法】运用纯培养法、反转录重复因子扩增(BOXA1R-PCR)分析技术、16S r RNA基因测序和系统发育分析对样品中可培养细菌进行多样性研究,测定了分离菌株的抗菌特性、吲哚乙酸(IAA)含量和产淀粉酶活性等指标。【结果】通过6种不同培养基共分离得到52株菌落特征不同的细菌菌株。基于菌落特征和BOXA1R-PCR图谱选取12株代表菌株用于16S r RNA基因序列测定。16S r RNA基因序列系统发育分析显示,52株菌株分属于芽孢杆菌属(Bacillus)、假单胞菌属(Pseudomonas)、寡养单胞菌属(Stenotrophomonas)和伯克霍尔德氏菌属(Burkholderia)4个属,其中芽孢杆菌属(Bacillus)为优势菌属。分离到的52株细菌有44株(占总分离菌株的84.6%)表现出对供试病原菌具有较好的抑制作用,高达94.2%的分离菌株能产IAA,有43株(占总分离菌株的82.7%)表现出淀粉酶活性。【结论】九香虫内细菌种群较为多样,具有潜在应用价值。     

油樟内生芽孢细菌的系统发育多样性

摘要：【目的】为了解油樟产芽孢内生细菌的多样性。【方法】采用改良的牛肉膏琼脂培养基分离、去除冗余及芽孢染色,测定所得产芽孢内生细菌的16S rRNA基因,进行系统发育分析。【结果】40株产芽孢内生细菌数量占分离得到的内生细菌总数的38.1％,其中根、茎、叶中分别分离得到24株、7株和9株。16S rRNA基因序列系统发育分析结果表明,35株菌可能分属于Bacillus、Lysinibacillus、Paenibacillus属的16个种,还有5株菌的序列与数据库中典型菌株序列相似性低于97％,代表着潜在新类群的存在。【结论】从油樟3个部位分离出的产芽孢内生细菌存在明显的系统发育多样性,而且3个部位分离出的产芽孢内生细菌区系既呈现出一定程度的细菌区系相似性,又表现出器官细菌区系的特异性。     

马粪海胆对环境变化的耐受性与选择性研究

对采自青岛近岸的马粪海胆进行温度、盐度、光强与底质等因子的耐受及选择实验。结果表明,青岛近岸马粪海胆的适温范围约在8-22℃,对温度的选择受驯养水温的影响;属窄盐性种类,适盐范围约在30-35;喜好弱光环境,饥饿状态的选择光强（8-25lx）较非饥饿状态（10-35lx）低;对粗沙砾底质具明显的正选择,而对细沙性底质呈明显的负选择。     

发酵车间空气源细菌淀粉酶产生菌筛选及多样性分析

采用平板水解圈法(plate hydrolysis spot method)对分离自酒鬼酒发酵车间空气样品的细菌进行淀粉酶产生菌筛选,运用基于16S rRNA基因序列的分析方法对高酶活菌株进行系统发育多样性分析。结果表明,73个受试菌株中,有23株为淀粉酶产生菌,占受试菌株的31.5%,其中有9株为高酶活菌。23个淀粉酶产生菌类群多样性和物种多样性较高,属于4个大的系统发育类群(Actinobacteria、Deinococcus-Thermus、Firmicutes、Proteobacteria)中的10个科(Bacillaceae、Deinococcaceae、Intrasporangiaceae、Microbacteriaceae、Micrococcaceae、Nocardiaceae、Propionibacteriaceae、Pseudomonadaceae、Rhodobacteraceae、Xanthomonadaceae)的13个属,可分为21个物种。进一步分析表明,9株高酶活菌属于细菌域(Eubacteria)的4个大的系统发育类群(Actinobacteria、Deinococcus Thermus、Firmicutes、Proteobacteria)的7个科(Bacillaceae、Deinococcaceae、Micrococcaceae、Microbacteriaceae、Nocardiaceae、Rhodobacteraceae、Xanthomonadaceae),归属于8个属。研究结果表明,酒鬼酒发酵车间空气源细菌存在较高比例的淀粉酶产生菌,且这些菌株具有较高的类群多样性和物种多样性。     

青岛近岸海域马粪海胆摄食的实验生态学研究

对采自青岛近岸海域的马粪海胆从其对各种饵料的选择和摄食吸收、温度与自身湿重对其摄食率的影响以及摄食活动特征等方面进行实验生态学研究。结果表明 ,马粪海胆在多种海藻并存的情况下 ,对海带及裙带菜等褐藻具明显的选择性 ,对石花菜及孔石莼等藻类的喜好性较差 ,但在食物匮乏条件下 ,马粪海胆的食谱则变得相当广泛。马粪海胆对裙带菜及海带的摄食率均明显高于孔石莼 ,但其对孔石莼的饵料吸收率则高于海带及裙带菜。马粪海胆的摄食受温度条件及自身湿重的影响 ,温度偏离适宜范围对摄食有抑制作用 ,日摄食率与湿重呈显著的指数下降关系 ,摄食率与湿重、温度因子可建立具较高可靠性的指数回归模型。马粪海胆对食物的口面吸附与对其摄食密切相关 ,其摄食活动与湿重呈显著的指数下降关系 ,而与排便活动呈显著的正相关 ,随湿重增加排便活动虽呈下降趋势 ,但未达显著水平。自然光照条件下马粪海胆的夜间摄食强度通常高于日间 ,但在全遮盖的无光照条件下这种昼夜摄食差异则变得不显著 ;对摄食活动的连续观测表明马粪海胆的摄食活动受光强变化的影响 ,其摄食活动的高峰出现在光强减弱的早间及傍晚 ,而日间的强光照环境会抑制其摄食活动     

Energy metabolism of sea urchin spermatozoa, with phosphatidylcholine as the preferred substrate

Phosphatidylcholine content in the spermatozoa of the sea urchin, Hemicentrotus pulcherrimus, decreased rapidly during incubation with sea water. Sea urchin sperm contained approx. 85% phospholipid in total lipid. Phosphatidylcholine (PC) was the principal lipid. Other phospholipids, however, remained at constant levels during incubation. Although the free fatty acid content gradually increased following dilution of dry sperm in sea water, the amounts of triacylglycerol and cholesterol ester were extremely low. Analysis by gas-liquid chromatography indicated most of fatty acid moieties in PC to be polyenoic. PC composed in part of unsaturated fatty acids was consumed to a greater extent during incubation than that consisting of saturated fatty acids. Furthermore, 1-palmitoyl-2-[1-14C]linoleoylphosphatidylcholine was transformed to 14C-labelled free fatty acid in a subcellular system. Thus, possibly, phospholipase A2 is present in sea urchin sperm. Also, [1-14C]oleic acid was immediately oxidized to 14CO2 by sperm. It is thus concluded that sea urchin sperm use phosphatidylcholine as a substrate for energy metabolism.     

False fertilization in sea urchin eggs induced by diabolin, a 120K kelp protein

A 120K lectin-like protein was isolated from the kelp Laminaria diabolica (Oni-kombu), with a unique activity to induce false fertilization specifically in the eggs of the sea urchin Hemicentrotus pulcherrimus. The protein designated as "diabolin" rendered the unfertilized egg forms and elevated the fertilization envelope without insemination at 18 nM half-maximally. Those eggs with elevated fertilization envelopes, however, could not enter into normal cleavage or further development, and hence the proliferation of the sea urchin was hindered. Diabolin, thus, by its unique defense mechanism protects the kelp from the predator sea urchin. It was partially sequenced and found to have the highest homology with phytoene dehydrogenase from the plant virus Erwinia uredovora. A question was left to be solved as to how the kelp on the southeast coast of Hokkaido Island could develop the defense mechanism against the sea urchin on Honshu Island separated by Tsugaru Straits.     

Degradation of yolk proteins in sea urchin eggs and embryos

Yolk granules isolated from unfertilized and fertilized eggs of the sea urchins, Hemicentrotus pulcherrimus and Anthocidaris crassispina, were incubated in acidic media, and the protein components were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. By the incubation, a protein (molecular weight 180,000 in H. pulcherrimus and 178,000 in A. crassispina) most abundant in unfertilized eggs decreased, while proteins (molecular weight 61,000, 72,000, 94,000, 114,000 in H. pulcherrimus and 56,000, 70,000, 92,000, 112,000 in A. crassispina) dominant in developed embryos increased. Neither alkaline nor neutral condition resulted in such changes in the electrophoretic patterns of proteins as observed in acidic media. Experiments with various inhibitors of proteases suggested that thiol protease(s), such as cathepsin B, may be the most important enzyme(s) in the degradation of yolk proteins in embryogenesis of the sea urchin.     

Changes of tropomyosin isoforms during development of cross-fertilized sea urchin embryos

Changes of tropomyosin isoforms during development of the sea urchin, Hemicentrotus pulcherrimus , were investigated using two-dimensional urea-shift gel electrophoresis. Tropomyosin isoforms included in the embryos were gradually increased after 2 cell stage and retained at a constant level after gastrula stage. To detect the tropomyosin isoforms derived from zygotic genomes, embryos cross-fertilized between H. pulcherrimus and Pseudocentrotus depressus gametes were prepared. Since tropomyosin isoforms from H. pulcherrimus eggs and from P. depressus eggs could be distinguished from each other on a two-dimensional electrophoretic gel, the paternal isoforms of tropomyosin in the cross-fertilized embryos, which were not included endogenously in the egg, could be regarded as products derived from zygotic genomes. The paternal isoforms of tropomyosin were detected first at around the gastrula stage in embryos cross-fertilized between H. pulcherrimus sperm and P. depressus eggs and also in the reverse combination of the gamete species. Muscle tropomyosins derived from H. pulcherrimus and P. depressus genomes were similarly detected in cross-fertilized embryos at the pluteic stage when the muscle tropomyosin appeared in sea urchin embryos.     

Phosphatidylcholine metabolism for energy production in sea urchin spermatozoa

Sea urchin spermatozoa use endogenous phosphatidylcholine (PC) to produce energy for swimming. The catabolism of PC was studied in Hemicentrotus pulcherrimus spermatozoa. Following incubation in sea water, the content of PC decreased and that of choline increased gradually, whereas phosphocholine maintained a constant level. Measurement of the radioactivity in metabolites converted from 1-palmitoyl-2-[1-14C]linoleoyl-PC, [choline-methyl-14C]dipalmitoyl-PC and 1-[1-14C]palmitoyl-lysophosphatidylcholine (LysoPC) showed that the major degradative pathway is PC----LysoPC----glycerophosphocholine----choline. 1-Palmitoyl-2-[1-14C]linoleoyl-PC and [1-14C]oleic acid were oxidized to 14CO2 in a cell-free system of spermatozoa. Sea urchin spermatozoa thus appear to quite likely obtain energy through the oxidation of fatty acid(s) from PC.     

Analysis of replicating DNA molecules from embryos of the sea urchin, Hemicentrotus pulcherrimus, by electron microscopy

DNA was extracted from embryos of the sea urchin, Hemicentrotus pulcherrimus, at the S phase and examined by electron microscopy. We detected replication microbubbles with a mean size of 404 bases, in addition to replication macrobubbles of more than 1.0 kilobase (kb) in length. Seventy-five percent of the center-to-center distances of the microbubbles were 0.6-1.8 kb with a mean of 1.2 kb. Forty-five percent of the microbubbles were arranged as clusters of four or five microbubbles. These results suggest that at least 34% of the initiation sites for DNA replication are present on a DNA molecule in clusters in which the sites are arranged at 1.2-kb intervals.