Interspecific hybridization and genetic variability of Phlebotomus sandflies

The first successful hybridization is reported between Phlebotomus papatasi and P. duboscqi, two important Old World sandfly vectors of leishmaniasis and other diseases. Laboratory strains of P. papatasi and P. duboscqi were separable by six diagnostic enzyme loci: Est-3, Idh-1, Mdh-2, Mpi, Tre-1 and Tre-3. Hybrids between the two species were verified by the recovery of heterozygous isozyme patterns for the diagnostic loci. No F2 or backcross progeny were obtained. P. papatasi was separated from P. bergeroti by three diagnostic enzyme loci: Est-3, Mpi and Pgd. The isozyme patterns of P. bergeroti contain elements of both P. duboscqi and P. papatasi, although seven diagnostic loci (Est-3, Idh-1, Me, Mpi, Pgd, Tre-1 and Tre-3) separated P. bergeroti from P. duboscqi. Genetic variability profiles of the three species were established for 20 enzyme loci. Three geographically distant strains of P. papatasi from Calcutta, Maharashtra and Israel had isozyme genetic distances of < 0.05. The recently established Calcutta strain showed an unexpectedly low genetic variability with only one (Idh-2) of 20 loci being polymorphic (average heterozygosity of 1.9%) in contrast to 5-8 polymorphic loci (10-12% heterozygosity) in the Maharashtra and Israel strains. Mass and single pair crosses between the three P. papatasi strains were fertile with normal progeny numbers. Thus we found no signs of speciation in P. papatasi.     

Gametic associations between inversion and allozyme polymorphisms in Drosophila buzzatii.

Gametic disequilibria between second chromosome polymorphic arrangements and seven linked allozyme loci were estimated in seven populations of Drosophila buzzatii from Argentina. Significant and consistent associations across populations were detected for Est-1, Est-2, Aldox, and XDH: Phenograms based on Nei's genetic distance showed that chromosomes carrying the 2ST arrangement were more similar to each other, irrespective of the population from which they were extracted, than to chromosomes carrying the derived 2J and 2JZ3.Restriction of recombination in heterokaryotypes seems to be the best explanation for the significant linkage disequilibria between inversions and the loci located inside the rearranged segments, for example, Est-1 and Aldox, or close to the break points, for example, Est-2. However, epistatic interactions between Xdh, which is outside the inversions and not near the break points, and loci tightly linked to the inversions, is the most likely explanation for the association between Xdh and chromosomal arrangements. Some of the associations detected in endemic Argentinean populations are coincident with data obtained in colonizing populations of the Old World and Australia. Thus historical processes that took place in the original area of the species' distribution can account for these linkage disequilibria in colonized populations of D. buzzatii.     

Melanopsis from the Pleistocene site of 'Ubeidiya, Jordan Valley: direct evidence of early hybridization (Gastropoda: Cerithioidea)

'Ubeidiya is a 1.4 Myr-old Lower-Pleistocene site in the Jordan Valley. Its rich Melanopsis fauna was found to include five species: buccinoidea , costata, turriformis , phanesiana obediensis and multiformis . These species and their conchiometrics are described. M. buccinoidea and costata occur in the Levant also today whereas turriformis , p. obediensis and multiformis are extinct. These findings suggest considerable faunal connections between the Jordan, the Orontes and perhaps also Rodhos during the lower Pleistocene. During the late Miocene, when the Mediterranean Sea level dropped, coastal-plain freshwater habitats could have expanded and Melanopsis species could then have invaded the Rift Valley via coastal rivers. In addition they could have reached later, via the Rift Valley. Species frequencies of Melanopsis throughout 'Ubeidiya suggest three' Melanopsis landscapes': an early period dominated by buccinoidea , a later one by costata and an upper one by p. obediensis . It is reasonable to speculate that the buccinoidea landscape represents a spring or perhaps a deep lake with a nearby stream; the costata landscape a shallow, nonturbulent, well-aerated lake with a slow current; and the p. obediensis landscape a turbulent, well-aerated lake. Intermediates were found between buccinoidea and costata . Their low frequency and their chrono-distribution suggest they are hybrids, rather than evolutionary transitions between species. The 1.4 Myr old fossils of 'Ubeidiya may be the earliest direct evidence of hybridization among molluscs in nature, that is still going on today in the same region and aquatic system, among the same species. The Melanopsis hybrid populations may perhaps act as filters that prevent the introgression of most genes, but allow others to disperse into the range of the parent species. © 2002 The Linnean Society of London, Biological Journal of the Linnean Society , 2002, 75 , 39–57.     

Tracing the geographic origin of the cosmopolitan parthenogenetic insect pest Liposcelis bostrychophila (Psocoptera: Liposcelididae)

The randomly amplified polymorphic DNA technique was used to trace the geographic origin of Liposcelis bostrychophila Badonnel populations in Australia from unknown geographic sources internationally. Haplotype (or clonal) diversity was high, with 474 unique haplotypes found from 616 individuals genotyped. Gene diversity estimates (0.10-0.28) and percent polymorphic loci (38.1-88.1%) were moderate to high for most populations. This resulted in genetic distance estimates that ranged from 0.04 to 0.26 and were significantly different for most pairwise population combinations. G ST values for all populations were also moderate (0.04-0.54) and again were significantly different for most pairwise population comparisons. Analysis of molecular variance revealed that the majority of variation was apportioned among individuals within populations regardless of the level at which they were grouped. Gene flow (Nm) was mostly low for all pairwise populations comparisons with an average Nm=1.8. A non-significant negative correlation between genetic distance and geographic distance was found for worldwide populations. In contrast, within Australian populations a significant positive correlation between genetic distance and geographic distance was detected. Genetic relationships explored using unweighted pair group method analysis and non-metric multidimensional scaling indicated a mixed pattern of genetic similarities among all populations. Multiple introductions, from a wide range of international source populations, have obscured the ability to accurately determine the geographic origin of L. bostrychophila in Australia.     

三个品种豚鼠血液蛋白多态性的比较分析

目的比较分析白毛黑眼（WHBE）豚鼠和DHP豚鼠、花色豚鼠三个品种豚鼠在13个血液蛋白位点上的多态性。方法采用垂直板浓度和pH均不连续的聚丙烯酰胺凝胶电泳法对WHBE豚鼠、DHP豚鼠和花色豚鼠的66只个体的后白蛋白（Po）、前转铁蛋白1（Prt1）、前转铁蛋白2（Prt2）、转铁蛋白1（Tf1）、转铁蛋白2（Tf2）、后转铁蛋白（Ptf）、慢α球蛋白（Sag）、红细胞酯酶（Es）、血清酯酶1（Est1）、血清酯酶3（Est3）、血红蛋白α（Hbα）、血红蛋白β（Hbβ）和白蛋白（Alb）共13个蛋白位点进行了电泳及染色,再利用电泳图谱对各蛋白位点基因频率、平均杂合度和遗传距离进行计算,然后结合聚类分析。结果 Tf1、Tf2、Ptf、Est1和Es在三个豚鼠品种中表现为多态,其中Tf1可作为识别WHBE豚鼠的遗传标记。Po、Prt1、Prt2、Sag、Est3、Hbα、Hbβ和Alb等位点在三个豚鼠品种中的表型一致。Hardy-Weinberg平衡状态分析表明,Es为DHP豚鼠的高度不平衡位点。Ptf为花色豚鼠的高度不平衡位点。在WHBE豚鼠中,Tf1为高度不平衡位点,Est1为不平衡位点。在三个豚鼠品种中,所检测的13个蛋白位点的平均杂合度的排列顺序为：花色豚鼠（0.350 1）〉WHBE豚鼠（0.339 0）〉DHP豚鼠（0.313 5）。聚类分析结果表明,花色豚鼠和WHBE豚鼠的遗传遗传距离最近（0.064 3）,DHP豚鼠与花色豚鼠的遗传距离最远（0.179 2）。结论利用这些蛋白位点可以有效鉴别WHBE豚鼠、DHP豚鼠和花色豚鼠血液蛋白的遗传多态性。     

Est-2 and Est-3 polymorphisms in Culex pipiens L. from southern France in relation to organophosphate resistance

Est-2 and Est-3 linkage disequilibrium was investigated in 43 natural populations. An association between Est-2 ^0.64 and Est-3 ^A alleles (or its reverse, Est-3 ^Null and alleles other than Est-2 ^0.64) was not observed in 19 (1.2%) of the 1599 mosquitoes analyzed, whereas it should have been found in nearly 400 (25%) individuals if the two loci were in equilibrium. This observation is discussed in relation to organophosphate resistance and genetic distance of the two genes.     

Genetic variation and its evolutionary implications in a Mediterranean island endemic lizard

The peculiar bioclimatic and geographic features of Corso–Sardinian islands may provide an ideal scenario for investigating microevolutionary processes, given their large heterogeneity of environments, which could affect dispersal and gene flow among populations, as well as processes of local adaptation. The genetic variation and differentiation among populations of the endemic lizard Archaeolacerta bedriagae were studied by allozyme electrophoresis at 20 presumptive loci. The genetic structure of this species is characterized by relatively high levels of polymorphism and low differentiation among populations. The pattern of genetic differentiation cannot be explained by genetic drift as a function of geographic distance. Genetic distance data show that genetic variation is distributed into three geographically coherent population groups and suggest a recent (Late Pleistocene) origin for the observed geographic fragmentation. The analysis of environmental correlates of allozymic variation indicates a strong correlation of the Idh-1 locus with climatic variables. The frequency of the Idh-1¹⁰⁶ allele is negatively correlated with annual temperature, and positively correlated with annual precipitation. In addition, the observed heterozygosity at this locus decreases towards more arid climatic regimes. The results obtained support the assumption of differential selection acting on Idh-1 allozymes under diverse climates. An association between Idh-1 allozymes and local bioclimatic regimes was also observed for the sympatric lizard Podarcis tiliguerta , suggesting a key role for such selective agents on Idh-1 polymorphism in these two Corso–Sardinian lacertids.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 661–676.     

Allozyme variation and divergence in the phyllotine rodent Calomys hummelincki (Husson, 1960)

The aim of the present study was to assess the degree of genetic variation and divergence among six populations of Calomys hummelincki, a phyllotine rodent distributed in northern South America. With this information we will try to evaluate the two hypotheses of possible colonization and differentiation of this group of rodents postulated by Baskin and Reig. We studied 34 loci by electrophoretic analysis: 21 were monomorphic for all populations and 13 were polymorphic in at least one population, being P _1% = 21.6% the mean value for all populations. The mean value of heterozygosity per locus was H = 0.075. Low values of genetic distance were observed among populations of the Llanos region (0.001 < D < 0.006). There was a larger genetic distance (D = 0.024) between the population from Isiro, in the northwestern semiarid region, and those from the Llanos region. The insular population of Aruba displayed the lowest value of genetic distance with the population from Isiro (D = 0.014). The specimens from Sipao, on the right side of the Orinoco river, displayed the highest values of genetic distances in comparison with other populations of C. hummelincki (0.070 < D < 0.095). The relatively high differentiation was due to the fixation of new alleles, not found in other populations of C. hummelincki, at loci Idh-1 and Est-2. F-statistics and Nm values indicated reduced gene flow among the populations sampled. Despite the limited data, the results seem to support Reig's hypothesis about south to north colonization of genus Calomys in South America. This revised version was published online in July 2006 with corrections to the Cover Date.     

濒危植物翅果油树种群的遗传多样性和遗传分化研究

利用微卫星（SSR）标记对来自山西和陕西两省的7个翅果油树（Elaeagnus mollisDiels）种群进行遗传多样性和遗传结构研究。10对SSR标记共检测到126个位点,其中多态位点114个。在物种水平上,平均多态位点百分率为90.79%,有效等位基因数（Ne）、Nei基因多样性指数（H）和Shannon多样性指数（I）分别为1.6072、0.3166、0.4603;在种群水平上,多态位点百分率为61.99%,有效等位基因数（Ne）、Nei’s基因多样性指数（H）、Shannon多样性指数（I）分别为1.5445、0.2683、0.3815。遗传分化系数GST为0.2074,表明了翅果油树种群的遗传变异主要存在于种群内。基因流Nm为1.9111〉1,说明种群间基因交流可以阻止由于遗传漂变导致的遗传分化。聚类结果表明,翅果油树种群间的遗传距离与地理距离有一定的相关性,经Mantel检验,种群的地理距离与遗传距离之间呈正相关,但未达到显著水平（p〉0.05）。结果表明,遗传多样性水平与物种本身特性和不同干扰生境有关,濒危植物并不一定表现为遗传变异水平的降低。     

High levels of genetic polymorphism in the insular endemic herb Jepsonia malvifolia.

Jepsonia malvifolia is a long-lived perennial herb endemic to the Channel Islands of southern California and Guadalupe Island, Mexico. Twelve populations of J. malvifolia on San Clemente Island were surveyed for their genotype at 21 allozyme loci, revealing high levels of genetic polymorphism. For all individuals across San Clemente Island, 95.2% of loci are polymorphic with A(p) = 2.90 and H(e) = 0.179. Populations averaged 60.2% polymorphic loci with A(p) = 2.42 and H(e) = 0.158. Most variation is found within rather than among populations (G(ST) = 0.101), although differentiation among populations is significant. Genetic identities range from 0.936 to 0.999 with mean I = 0.975. There is no significant relationship between genetic and geographic distance. Gene flow among populations is Nm = 9.5 based on private alleles and Nm = 2.2 based on F(ST). Outcrossing rates based on fixation indices average t = 0.753, indicating a primarily outcrossed mating system. The genetic variation observed is unusually high for an insular endemic herb and indicates that J. malvifolia is unlikely to be endangered by genetic factors.     

Enzyme polymorphism in Drosophila melanogaster populations in Iraq

Electrophoretic studies of the degree and pattern of polymorphism at two third-chromosome loci, esterase-6 (Est-6) and phosphoglucomutase (PGM), were carried out in three Drosophila melanogaster populations collected from different localities in Iraq: Mosul, Tuwaitha, and Basrah. The results show that only the Tuwaitha population was polymorphic for both loci; the other two populations were polymorphic for Est-6 and monomorphic for PGM. The allele frequency changes at both loci were followed for 20 generations in an experimental cage derived from the Tuwaitha population; it was found that there is a deviation from Hardy-Weinberg equilibrium at both loci toward the homozygote.     

麦无网长管蚜不同地理种群遗传多样性的ISSR标记研究

为阐明麦无网长管蚜Metopolophium dirhodumus不同地理种群的遗传多样性,利用ISSR分子标记对6个地区（河北保定、定州、石家庄、邢台、邯郸,山东聊城）的麦无网长管蚜种群进行了遗传多样性研究。23条ISSR引物扩增出了297条清晰条带,其中172条（57.91%）具有多态性。遗传多样性分析结果表明：麦无网长管蚜群体间的遗传多样性（57.91%）高于群体内的遗传多样性（26.24%）,其中河北保定种群和河北邯郸种群的种群内遗传变异最小（24.92%）,河北石家庄种群的种群变异最大（41.75%）,河北和山东地区的种群（除河北石家庄）之间没有显著遗传差异。根据种群变异来源分析,有26.44%遗传变异来源于种群间,73.56%变异来自于种群内（Gst=0.2644）,不同地理种群间并没有出现分化现象（Nm=1.3910）。利用不加权算术平均法（UPGMA）对6个种群进行统计分析,构建进化树,发现6个种群分为了两大类,而其地理距离与遗传距离并不存在相关性,地理空间并未对其种群间的基因交流产生影响。麦无网长管蚜有较高的遗传多样性,而各个种群间并没有明显遗传分化的趋势。本研究有关麦无网长管蚜不同地理种群基因流和遗传变异将为控制麦蚜危害和田间综合防治提供必要的数据支持。     

A population genetics study of Anopheles darlingi (Diptera: Culicidae) from Colombia based on random amplified polymorphic DNA-polymerase chain reaction and amplified fragment lenght polymorphism markers

The genetic variation and population structure of three populations of Anopheles darlingi from Colombia were studied using random amplified polymorphic markers (RAPDs) and amplified fragment length polymorphism markers (AFLPs). Six RAPD primers produced 46 polymorphic fragments, while two AFLP primer combinations produced 197 polymorphic fragments from 71 DNA samples. Both of the evaluated genetic markers showed the presence of gene flow, suggesting that Colombian An. darlingi populations are in panmixia. Average genetic diversity, estimated from observed heterozygosity, was 0.374 (RAPD) and 0.309 (AFLP). RAPD and AFLP markers showed little evidence of geographic separation between eastern and western populations; however, the F ST values showed high gene flow between the two western populations (RAPD: F ST = 0.029; Nm: 8.5; AFLP: F ST = 0.051; Nm: 4.7). According to molecular variance analysis (AMOVA), the genetic distance between populations was significant (RAPD:phiST = 0.084; AFLP:phiST = 0.229, P < 0.001). The F ST distances and AMOVAs using AFLP loci support the differentiation of the Guyana biogeographic province population from those of the Chocó-Magdalena. In this last region, Chocó and Córdoba populations showed the highest genetic flow.     

Does the Mediterranean killifish Aphanius fasciatus (Teleostei: Cyprinodontidae) fit the one-dimensional stepping-stone model of gene flow?

Five samples (30 individuals each) of the Mediterranean cyprinodontid fish, Aphanius fasciatus, were analysed by allozyme electrophoresis for a study concerning genetic structure and gene flow among populations. Forty-three loci, twelve of which were polymorphic at P_0.99 level, were analysed. A. fasciatus showed low levels of genetic polymorphism, with expected heterozygosity values ranging from 0.027 (SE = 0.013) to 0.064 (SE = 0.023). The modified Rogers' genetic distances ranged from 0.053 to 0.202. The observed pattern of genetic differentiation among populations, obtained by multidimensional scaling of the modified Rogers' genetic distances, was consistent with geographic distribution. Coancestry coefficient ( = 0.302, SE = 0.045) indicated a very high degree of genetic subdivision among populations and the estimate of gene flow (the effective number of migrants per generation, Nm = 0.445), computed by Wright's method, showed very restricted gene flow among populations. The regression analysis carried out using log-transformed values of geographic distance against M^ (pairwise values of Nm) gave a regression coefficient, b = –1.03, indicating that a restricted migration rate among populations can occur according to the one-dimensional stepping-stone model. The amount and modality of gene flow in A. fasciatus inferred from the results of the present study are consistent with the absence of dispersal stages and with the fragmented nature of brackish-water habitats along the coasts.     

Annual variation of enzyme polymorphism in four natural populations ofDrosophila melanogaster occupying different niches

Gene and gametic frequencies of theAdh, Aox, α-Gpdh andEst-6 loci (map position: II-50.I, III-56.6, II-20.5 and III-36.0 respectively) have been studied in two wine cellar populations at 40 km distance from each other, and two field populations, one near each of the wine cellars. Only one locus,Aox was polymorphic for more than two electromorphs. TheAdh locus seems to follow a different mode of change in genic frequencies in wine cellars, than in the field, while the other loci exhibit a similar pattern of polymorphism in the field and in the wine cellar. Linkage disequilibrium in the gameteAdh/α-Gpdh is affected by different phenomena in the field than in the wine cellar. A stronger linkage disequilibrium in theAdh/gametes observed in the field, may be a consequence of a mixture of subpopulations subjected to differential selection at theAdh locus. TheAdh locus is the only one in which selection is detected in one environment. It is neutral in other environments. Theα-Gpdh, Aox andEst-6 polymorphisms, however, behave as though they were neutral both in the wine cellar and in the field.     

Allozyme variation in bank vole,Myodes glareolus (Mammalia: Rodentia) in Northern Anatolia

A total of 94 specimens from 16 populations of Myodes glareolus, collected between 2004 and 2007, from different altitudinal distributions were analyzed, using 16 enzyme systems. We found that 10 out of 22 loci (Idh-2, α-Gpdh, Me, Pgm, Pgd, Mdh-s, Ada, Est-1, Ldh-1, and Ldh-2) were polymorphic. Group 1 included population from altitudes ranging from 27 to 605 m above sea level (ASL), and Group 2 were from altitudes ranging from 1003 to 1288 m ASL. The summaries of the genetic parameters also displayed differences between the 2 groups. The possible reasons of such fragmentation between M. glareolus populations were discussed.     

Isocitrate dehydrogenase in Aedes aegypti: formal genetics, preliminary linkage data and study of natural populations

Two loci for isocitrate dehydrogenase (Idh-1 ad Idh-2) are described in Ae. aegypti, both polymorphic with two codominant alleles. Crosses made to test linkage relationships of Idh-1 indicate that this locus is independent from sex (chromosome 1) and from Sod-1 and Hk-1 loci (chromosome 3), while it is linked to Pgm on the second chromosome. Average percent of recombination is 11.37, but significant differences have been found among strains. Data on genetic variability of Idh-1 and Idh-2 in three domestic african field populations are presented.     

Allozyme variation in the endangered insular endemic Castilleja grisea

BACKGROUND AND AIMS: Genetic diversity in Castilleja grisea, an endangered, perennial herb endemic to San Clemente Island, California was investigated. Subsequent to the elimination of goats from the island in 1992, many populations of C. grisea have reappeared and have been increasing in size. METHODS: Nineteen populations were surveyed for their genotype at 19 allozyme loci. KEY RESULTS: At the taxon level, 57.9 % of loci are polymorphic with A(P) = 3.09 and H(E) = 0.137. Populations averaged 33.0 % polymorphic loci with A(P) = 2.43 and H(E) = 0.099. Most variation is found within rather than among populations (G(ST) = 0.128), although differentiation among populations is significant. Genetic identities range from I = 0.960 to I = 1.000 with mean I = 0.990. There is no significant relationship between genetic and geographic distance. Gene flow among populations is Nm = 2.50 based on private alleles and Nm = 1.70 based on F(ST). Outcrossing rates based on fixation indices average t = 1.01, indicating a primarily out-crossed mating system. CONCLUSIONS: The observed genetic variation is moderately high, unusually so for an insular endemic species, suggesting that C. grisea may not have lost substantial genetic variation during 150 years of overgrazing, and indicating that it is unlikely to be endangered by genetic factors.     

Genetic analysis of natural populations of Poeciliopsis monacha: Allozyme inheritance and pattern of mating

The genetic bases of seven polymorphic enzymes in Poeciliopsis monacha have been demonstrated through the analysis of allelic segregation in presumed heterozygotes captured in natural populations. Tests of linkage among loci revealed a significant association between two loci, Ldh-1 and Idh-2. Evidence for multiple insemination was detected in 23 percent of the females examined. Considering the limited number of markers available in the present study, it is probably that the actual frequency of multiple insemination is much higher.     

Nonuniform linkage disequilibrium within a 1,500-kb region of the human immunoglobulin heavy-chain complex.

We have characterized 10 VH polymorphic loci of the VH2, VH3, VH4, and VH5 families. Eight of 10 VH polymorphisms were found to be insertion/deletion polymorphisms, probably the result of nonhomologous recombination over the course of evolution of the current human VH repertoire. The 10 VH polymorphic loci were analyzed in 10 three-generation and 10 two-generation Canadian caucasoid families. Linkage disequilibrium (allelic association) was measured between pairs of VH polymorphic loci, and 12 significant associations were found. The degree of linkage disequilibrium measured between IGH polymorphic loci was then compared with the physical distance separating the loci. The physical distance between IGH polymorphic loci does not entirely determine the degree of linkage disequilibrium between polymorphic loci. Two regions, one in the VH region (between VH3f-2 and VH5-2 and one in the CH region (between C delta and C gamma 3), were found to have linkage disequilibrium values approximately 1/3,000 of that observed in other portions of the IGH region. The previous identification of recombinants in the C delta-to C gamma 3 region indicates that these areas of low linkage disequilibrium are consistent with the presence of recombination hot spots. The observed high amount of recombination in the subtelomeric portion of chromosome 14 therefore appears to be the result of specific hot spots for recombination, rather than a general increase in recombination in this region.