海洋酸化生态学研究进展

工业革命以来,人类排放的大量二氧化碳引起温室效应的同时,也被海洋吸收使得全球海洋出现了严重的酸化。海洋酸化及伴随的海水碳酸盐化学体系的变化对海洋生物产生深远的影响。以海洋酸化对钙化作用和光合作用的影响为重点,总结了近年来关于海洋酸化的研究,介绍了海洋中不同生态系统对海洋酸化的响应。一方面,海水中CO23-浓度和碳酸钙饱和度的降低对海洋钙化生物造成严重损害,生活在高纬的冷水珊瑚和翼足目等文石生产者是最早的受害者;贝类和棘皮动物在钙化早期对海洋酸化尤其敏感,其幼体存活率受到海洋酸化的严重制约。另一方面,CO2浓度的增加能促进海洋植物的光合作用和生长,增加初级生产力,改变浮游植物的群落组成。此外,海洋酸化可以促进固氮和脱氮作用同时削弱硝化作用,改变溶氧浓度分布和金属的生物可利用性,从而对海洋生物产生间接影响。海洋酸化对海洋生态系统的影响机制复杂,影响程度深远。为了能准确的评估海洋酸化的生态学效应,需要更全面深入的研究。     

海水酸化及升温对刺参稚参生长和变色的影响

海洋酸化和海洋变暖是当下及未来海洋生物及其依存生态系统面临的主要环境压力和生态问题。当前,海洋生物早期发育气候变化生物学的研究主要集中于海洋酸化的影响,为了更好地探究海洋气候变化对海洋生物的影响,有必要研究海洋酸化和变暖联合作用下海洋生物的生态响应。以受精后24天的刺参稚参为研究对象,通过模拟当前和本世纪末海洋环境,观察海水酸化和升温对刺参稚参在体色发育关键时期生长、发育及体色变化的影响。实验设置对照组(大连近海水温,pCO2400 mg·kg^-1)、升温组(对照组水温+2℃,pCO2400 mg·kg^-1)、酸化组(对照组水温,pCO21000 mg·kg^-1)、酸化升温组(对照组水温+2℃,pCO21000 mg·kg^-1)。结果表明:温度升高2℃能够显著提高稚参发育速率,体色变化加快;pH值降低0.23个单位显著延迟稚参生长,体色变化减缓,个体间体重差异变大;升温2℃能抵消pH降低0.23个单位对稚参生长和发育的负面影响;较长时间的海水酸化和升温胁迫能够使稚参逐渐适应,稚参表现出一定的耐受性。     

海洋生物礁类型、生态功能及其生态修复

海洋生物礁是由具有造礁能力的海洋生物聚集而成的一种三维礁体结构,其形成改变了海底地貌、增加了不同尺度上的地形复杂性,为其他海洋生物提供了栖息地并维持了生物多样性。近年来,由于自然因素和人为因素影响,海洋生物礁受到了严重威胁,已成为海洋生态保护和修复领域的重要研究对象。综述了海洋生物礁的类型、生态功能及其生态修复的研究进展。根据形成海洋生物礁的优势造礁生物种类,将海洋生物礁分为海藻礁、海绵礁、刺胞动物礁、贝类礁和多毛类礁,其优势造礁生物分别是珊瑚藻和仙掌藻、钙质海绵和硅质海绵、造礁珊瑚、牡蛎、龙介虫。目前国内对海洋生物礁的全面了解相对较少,主要集中在珊瑚礁和牡蛎礁。海洋生物礁的生态功能主要有海岸防护、提供栖息地、净化水体、固碳作用和能量耦合等。全球变暖和海洋酸化等全球气候变化以及海洋污染、破坏性渔业捕捞、海岸工程、水产养殖和敌害生物等自然和人为因素对海洋生物礁构成了严重威胁。海洋生物礁的生态修复方法分为两类：在退化生物礁区投放造礁生物逐渐成礁,投放人工礁体补充造礁生物逐渐成礁。针对海洋生物礁保护和修复的需要,提出下一步应加强海洋造礁生物生态特征、海洋造礁生物种群丧失因素和海洋生物礁保护与...     

海洋酸化影响硅藻固碳相关基因表达的研究进展

由于人类活动导致的大气CO2浓度升高,将导致海水p H值下降,从而引起海洋酸化,改变海水碳酸盐系统,影响海洋生物的生长、发育、代谢、凋亡及钙化过程等。研究海洋酸化对藻类固碳途径(生物碳泵)的影响对了解和预测未来海洋碳泵的发展趋势具有重要意义,硅藻作为海洋初级生产力的主要生产者,研究海洋酸化影响其固碳过程的意义更大。尽管目前已对海洋酸化影响硅藻的生理生化过程有了较为深入的研究,但从基因表达水平上研究海洋酸化对硅藻固碳过程的影响还较少,本文对此领域做一概述。     

海洋酸化对马氏珠母贝胚胎和早期幼虫发育的影响

研究当前预测2100年海洋将达到的酸化程度对马氏珠母贝(Pinctada martensii)胚胎和早期幼虫发育的影响.人工受精卵置于pH=7.70的CO2酸化海水(酸化组)和pH=8.10的对照海水(对照组)中进行胚胎和幼虫发育试验.结果表明:人工受精8 h后,酸化组和对照组胚胎在各发育时期的数量分布没有明显的差异;24 h后,酸化组16.6%±12.0%发育至D型幼虫,且畸形个体百分比为48.2%±9.1%;而对照组44.8%±7.4%发育至D型幼虫,畸形个体百分比仅为18.6%±11.5%.48 h后,酸化组D型幼虫百分比23.0%±9.6%.畸形个体比例高达63.2%±14.1%;对照组D型幼虫59.4%±13.0%,畸形个体百分比仅为26.6%±14.5%;与对照组相比,酸化组中D型幼虫壳长和壳高明显偏小,而且壳长增长缓慢.试验表明,将来马氏珠母贝这类发生生物钙化的典型热带海洋贝类生物,其幼虫发育将会受到海洋酸化的不利影响.     

海洋酸化效应对海水鱼类的综合影响评述

人类活动引起的大气CO2浓度的升高,除了使全球温度升高外,导致的另一个严重生态问题——海洋酸化(Ocean acidification,OA),受到社会各界包括科研界的高度重视,该领域的大部分研究结果都是在近十年才发表出来的,目前还有很多需要解决的问题。海洋酸化的研究涉及到很多学科的交叉包括化学、古生物学、生态学、生物地球化学等等。在生物学领域,海洋酸化主要围绕敏感物种,例如由碳酸钙形成贝壳或外骨骼的贝类,珊瑚礁群体等。鱼类作为海洋脊椎动物的代表生物类群,自身具有一定的酸碱平衡调节能力,但相关海洋酸化方向的研究并不是很多。尽管人们对于海洋酸化对鱼类的影响了解甚少,这并不说明海洋酸化对鱼类没有作用或者效应小,在相关研究逐步展开的同时,发现鱼类同样受到海洋酸化的危害,几乎涉及到鱼类整个生活史和几乎大部分生理过程,尤其是早期生活史的高度敏感。因此就目前国内外对此领域研究结果做综述,以期待业界同行能够对海水鱼类这个大的类群引起重视。     

海洋微藻响应重金属复合胁迫的生理生态学机制

重金属污染物进入海洋环境会破坏海洋生态系统的结构和功能。海洋微藻构成了海洋食物链的基础, 是海洋生态系统主要的初级生产者。重金属复合胁迫对海洋微藻产生毒性效应, 会阻碍藻细胞分裂、破坏DNA结构、抑制光合作用、减少细胞色素合成、导致藻细胞畸变以及改变浮游植物种类组成等。海洋微藻在长期种系进化或个体发育过程中, 形成了一系列响应重金属复合胁迫的特殊生理生态机制。它们可以利用由酶类和非酶类组成的抗逆保护系统, 减轻重金属复合胁迫导致的生物毒害作用; 还可以通过调节金属硫蛋白(Metallothionein, MT)等相关蛋白基因表达以维持正常的生理功能。探究海洋微藻响应重金属复合胁迫的生理生态学机制, 有利于为海洋重金属污染的生物修复提供依据, 具有重要的理论与现实意义。     

气候变化对海洋病毒生态特性及其生物地球化学效应的影响

摘要:病毒作为海洋中丰度最高的生命粒子,通过侵染和裂解宿主细胞影响宿主生理生态特性,改变海洋食物网的物质循环和能量流动,在海洋生物地球化学过程中扮演着重要角色。全球气候变化导致海面升温、海洋酸化、营养盐和海水盐度变化、低氧区扩大等海洋环境问题,对海洋病毒生理生态特性产生直接或间接的影响。本文从海洋病毒的生态功能和生物地球化学效应出发,概述了气候变化因子对病毒分布、丰度、生命策略以及与宿主之间相互作用等的影响,提出海洋病毒是全球气候变化研究中不可或缺的对象。     

“海洋生态系统工程师”及其生态作用

“海洋生态系统工程师”是能够塑造栖息地并使其他海洋生物受益的海洋生物种类。海洋中的植物、动物和微生物中均存在为其他生物种类塑造栖息地的“海洋生态系统工程师”,它们的生态作用是其发挥生态功能的基础。本文基于国内外相关文献,系统阐述了“海洋生态系统工程师”生态作用的相关研究进展,并对今后的主要研究方向和内容提出建议。“海洋生态系统工程师”能够在特定的海洋环境中发挥积极作用,但一旦成为入侵种可能会对入侵海域产生负面影响;有些“海洋生态系统工程师”在发挥积极作用的同时也会在不同程度上带来负面影响。今后,应加强海洋生物床、海洋生物礁、海洋生物膜和复合生态系统工程等研究,有效利用“海洋生态系统工程师”的积极作用并防控其负面影响,实现对海洋的综合开发利用和保护。     

全球气候变化下的海洋生物多样性

正当前人类社会发展改变了整个地球生态系统,地球历史进入了全新的人类世(Anthropocene)阶段(Steffen et al,2007)。人类活动对海洋生态系统及其生物多样性造成越来越显著的影响,尤以全球气候变化(global climate change)对海洋生物多样性的改变最为深刻,且影响面较广。全球气候变化主要表现在人类活动造成的化石燃料向大气排放过多的CO2而引起海水表层升温、海平面上升、降雨改变、海洋表层海水酸化、海流变化及紫外线辐射增强等一系列环境改变     

Unambiguous through-bond sugar-to-base correlations for purines in 13C, 15N-labeled nucleic acids: The HsCsNb,HsCs(N)bCb,and HbNbCb experiments

Summary A set of three 3D (¹H, ¹³C, ¹⁵N) triple-resonance correlation experiments has been designed to provide H1-H8 intraresidue sugar-to-base correlations in purines in an unambiguous and efficient manner. Together, the H_sC_sN_b, H_sC_s(N)_bC_b, and H_bN_bC_b experiments correlate the H1 sugar proton to the H8 proton of the attached base by means of the {H1, C1, N9, C8, H8} heteronuclear scalar coupling network. The assignment strategy presented here allows for unambiguous H1-H8 intraresidue correlations, provided that no two purines have both the same H1 and C1 chemical shifts and the same C8 and N9 chemical shifts. These experiments have yielded H1-H8 intraresidue sugar-to-base correlations for all five guanosines in the [¹³C, ¹⁵N] isotopically labeled RNA duplex r(GGCGCUUGCGUC)₂.     

Crystal structure of the ternary FimC-FimF(t)-FimD(N) complex indicates conserved pilus chaperone-subunit complex recognition by the usher FimD

Type 1 pili, anchored to the outer membrane protein FimD, enable uropathogenic Escherichia coli to attach to host cells. During pilus biogenesis, the N-terminal periplasmic domain of FimD (FimD(N)) binds complexes between the chaperone FimC and pilus subunits via its partly disordered N-terminal segment, as recently shown for the FimC-FimH(P)-FimD(N) ternary complex. We report the structure of a new ternary complex (FimC-FimF(t)-FimD(N)) with the subunit FimF(t) instead of FimH(p). FimD(N) recognizes FimC-FimF(t) and FimC-FimH(P) very similarly, predominantly through hydrophobic interactions. The conserved binding mode at a "hot spot" on the chaperone surface could guide the design of pilus assembly inhibitors.     

μ- and μ4-η coordination of A2H2 (A = C, Si, Ge, Sn and Pb) ligands with transition metals

The heavier analogs of C₂H₂ have been studied at the B3LYP level for their μ and μ₄-η² coordination properties with the transition metals. Based on known alkyne compounds, transition metal fragments [W₂(μ-NH)(Cp)₂(Cl)₂] and [Fe₄(CO)₁₂] have been chosen. The SBKJC relativistic effective core potentials and their associated basis sets were used on W, Fe, Sn and Pb, and the 6-31G(d) basis set was used on all other elements. All the complexes of Si₂H₂, Ge₂H₂, Sn₂H₂ and Pb₂H₂ are found to be local minima. The trans-twist nature of the ligand A₂H₂ (A = Si-Pb) is large in μ-coordinated complexes of W, and it is very small in μ₄-η² coordinated complexes of Fe. The electronic structure of these complexes was investigated using fragment molecular orbital method (FMO).     

Acetylcholinesterase/Butyrylcholinesterase inhibition activity of some new carbacylamidophosphate deriviatives

Eight newly synthesized carbacylamidophosphates with the general formula RC(O)NHP(O)Cl₂ with R = pCl–C₆H₄ 1a, pBr–C₆H₄ 2a, C₆H₅ 3a, and pMe–C₆H₄ 4a and RC(O)NHP(O)(NC₄H₈O)₂ R = pCl–C₆H₄ 1b, pBr–C₆H₄ 2b, C₆H₅ 3b, pMe–C₆H₄ 4b, were selected to compare the inhibition kinetic parameters, IC₅₀, K_i, k_p and K_D, on human erythrocyte acetylcholinesterase (hAChE) and bovine serum butyrylcholinesterase (BuChE), Also, the in vivo inhibition potency of compound 2a, 2b and 3a, were studied. The data demonstrates that compound 2a and compound 2b are the potent sensitive as AChE and BuChE inhibitors respectively, and the inhibition of hAChE is about 10-fold greater than that of BuChE.     

Antibacterial properties of recombinant human non-pancreatic secretory phospholipase A2

Human non-pancreatic secretory phospholipase A₂ (hnpsPLA₂) is a group IIA phospholipase A₂ which plays an important role in the innate immune response. This enzyme was found to exhibit bactericidal activity toward Gram-positive bacteria, but not Gram-negative ones. Though native hnpsPLA₂ is active over a broad pH range, it is only highly active at alkaline conditions with the optimum activity pH of about 8.5. In order to make it highly active at neutral pH, we have obtained two hnpsPLA₂ mutants, Glu89Lys and Arg100Glu that work better at neutral pH in a previous study. In the present study, we tested the bactericidal effects of the native hnpsPLA₂ and the two mutants. Both native hnpsPLA₂ and the two mutants exhibit bactericidal activity toward Gram-positive bacteria. Furthermore, they can also kill Escherichia coli, a Gram-negative bacterium. The two mutants showed better bactericidal activity for E. coli at neutral pH than the native enzyme, which is consistent with the enzyme activities. As hnpsPLA₂ is highly stable and biocompatible, it may provide a promising therapy for bacteria infection treatment or other bactericidal applications.     

Introduction: A Close Look at the Vacuolar ATPase

The vacuolar ATPases (V-type ATPases) are a family of ATP-dependent ion pumps and found in two principal locations, in endomembranes and in plasma membranes. This family of ATPases is responsible for acidification of intracellulare compartments and, in certain cases, ion transport across the plasma membrane of eucaryotic cells. V-ATPases are composed of two distinct domains: a catalytic V₁ sector, in which ATP hydrolysis takes place, and the membrane-embedded sector, V₀, which functions in ion conduction. In the past decade impressive progress has been made in elucidating the properties structure, function and moleculare biology. These knowledge sheds light also on the evolution of V-ATPases and their related families of A-(A₁A₀-ATPase) and F-type (F₁F₀-ATPases)ATPases.     

Assessing the Impact of Advected African Dust on Air Quality and Health in the Eastern United States

Large quantities of African dust are carried into the southeastern United States each summer with concentrations typically in the range of 10 to 100?µg m^?3. Because approximately one-third to one-half of the dust mass is in the size range under 2.5?µm diameter, the advection of African dust has implications for the EPA's newly implemented standard for PM_2.5 particulate matter and for the assessment of human health effects. It will be difficult to assess the impact of African dust events on air quality because they occur during the summer (maximum in July) when photochemical pollution events are frequent and intense in the eastern United States. Indeed, the presence of dust could affect the evolution of photochemical dust events. In order to assess the role of African dust in air quality in the United States, it will be necessary to develop a set of diagnostic indicators; it appears that dust mineralogy and elemental composition might be useful for this purpose. Various satellite products can be used to characterize the spatial coverage of dust events and, when coupled with meteorological tools, to predict impact regions.     

Earthworm effects on gaseous emissions during vermifiltration of pig fresh slurry

Treatment of liquid manure can result in the production of ammonia, nitrous oxide and methane. Earthworms mix and transform nitrogen and carbon without consuming additional energy. The objective of this paper is to analyse whether earthworms modify the emissions of NH₃, N₂O, CH₄ and CO₂ during vermifiltration of pig slurry.The experiment used mesocosms of around 50 L, made from a vermifilter treating the diluted manure of a swine house. Three levels of slurry were added to the mesocosms, with or without earthworms, during one month, in triplicate. Earthworm abundance and gas emissions were measured three and five times, respectively.There was a decrease in emissions of ammonia and nitrous oxide and a sink of methane in treatments with earthworms. We suggest that earthworm abundance can be used as a bioindicator of low energy input, and low greenhouse gas and ammonia output in systems using fresh slurry with water recycling.     

Crystal structure of the archaeal A1Ao ATP synthase subunit B from Methanosarcina mazei Gö1: Implications of nucleotide-binding differences in the major A1Ao subunits A and B

The A1Ao ATP synthase from archaea represents a class of chimeric ATPases/synthases, whose function and general structural design share characteristics both with vacuolar V1Vo ATPases and with F1Fo ATP synthases. The primary sequences of the two large polypeptides A and B, from the catalytic part, are closely related to the eukaryotic V1Vo ATPases. The chimeric nature of the A1Ao ATP synthase from the archaeon Methanosarcina mazei G?1 was investigated in terms of nucleotide interaction. Here, we demonstrate the ability of the overexpressed A and B subunits to bind ADP and ATP by photoaffinity labeling. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry was used to map the peptide of subunit B involved in nucleotide interaction. Nucleotide affinities in both subunits were determined by fluorescence correlation spectroscopy, indicating a weaker binding of nucleotide analogues to subunit B than to A. In addition, the nucleotide-free crystal structure of subunit B is presented at 1.5 A resolution, providing the first view of the so-called non-catalytic subunit of the A1Ao ATP synthase. Superposition of the A-ATP synthase non-catalytic B subunit and the F-ATP synthase non-catalytic alpha subunit provides new insights into the similarities and differences of these nucleotide-binding ATPase subunits in particular, and into nucleotide binding in general. The arrangement of subunit B within the intact A1Ao ATP synthase is presented.