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基于HT-SELEX筛选的节球藻毒素-R适配体的鉴定
引用本文:欧阳生群,胡波,周蓉,李振钢,焦炳华,王梁华.基于HT-SELEX筛选的节球藻毒素-R适配体的鉴定[J].中国生物化学与分子生物学报,2018,34(1):69-76.
作者姓名:欧阳生群  胡波  周蓉  李振钢  焦炳华  王梁华
作者单位:(中国人民解放军海军军医大学基础医学院 生物化学与分子生物学教研室,上海200433)
基金项目:重大新药创制科技重大专项(No.2018ZX09J18112)资助
摘    要:节球藻毒素-R(nodularin-R,NOD-R)是具有强烈肝毒性的蓝藻毒素。然而,现有的NOD-R检测技术均存在一定的局限性,亟待开发一种新的检测方法。本文利用指数富集的配基系统进化(systematic evolution of ligands by exponential enrichment,SELEX)技术结合高通量测序(HT-SELEX),筛选出NOD-R特异的高亲和力适配体。生物膜干涉(biolayer interferometry,BLI)技术对适配体的鉴定结果表明,适配体H62与NOD-R之间的亲和力最高,达到了168 nM。而且,该适配体不与其他毒素结合,具有较高的特异性。以上结果表明,适配体H62有望作为NOD-R检测新方法——适配体生物传感器的分子识别元件。

关 键 词:高通量测序-指数富集的配基系统进化技术  节球藻毒素-R  适配体  生物膜干涉技术  
收稿时间:2017-11-09

The Characterization of Nodularin-R Specific Aptamer Obtained from HT-SELEX
OUYANG Sheng-Qun,HU Bo,ZHOU Rong,LI Zhen-Gang,JIAO Bing-Hua,WANG Liang-Hua.The Characterization of Nodularin-R Specific Aptamer Obtained from HT-SELEX[J].Chinese Journal of Biochemistry and Molecular Biology,2018,34(1):69-76.
Authors:OUYANG Sheng-Qun  HU Bo  ZHOU Rong  LI Zhen-Gang  JIAO Bing-Hua  WANG Liang-Hua
Institution:(Department of Biochemistry and Molecular Biology, College of Basic Medical Sciences, Naval Medical University, Shanghai 200433, China)
Abstract:Nodularin-R (NOD-R), a cyanophycean toxin, is a potent hepatotoxin. However, there are different limitations of the detection methods for NOD-R. As a result, there is still an urgent need to develop a novel approach for the detection of NOD-R. Here, we combined High Throughput Sequencing (HTS) with Systematic Evolution of Ligands by Exponential Enrichment (SELEX) method (HT-SELEX), and selected aptamer that bound with high affinity and specificity to NOD-R. Biolayer interferometry (BLI) assays showed that aptamer H62 was the best one targeting NOD-R. The binding affinity between aptamer H62 and NOD-R was as high as 168 nM. Furthermore, aptamer H62 bound with high specificity to NOD-R. These results indicate that aptamer H62 would be a new molecular recognition element and provide clues for the construction of aptasensor specializing in NOD-R detection.
Keywords:HT-SELEX  nodularin-R  aptamer  biolayer interferometry  
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