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Investigation on BRCA1 SNPs and its effects on mastitis in Chinese commercial cattle
Authors:Yuan Zhengrong  Li Junya  Li Jiao  Zhang Lupei  Gao Xue  Gao Hui Jiang  Xu Shangzhong
Institution:Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100193, People's Republic of China. zhengrong_yuan@yahoo.com.cn
Abstract:The main objective of this study was to investigate whether the bovine breast cancer 1 (BRCA1) gene was associated with mastitis resistance in Chinese commercial cattle. A total of 51 SNPs were screened from public data resources and DNA sequencing. Three SNPs (c.5682G>C,c.26198C>T and c.46126G>T) were genotyped by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and created restriction site PCR (CRS-PCR) methods and 21 combinations of these SNPs were observed. The single SNP and their genetic effects on somatic cell score (SCS) were evaluated and a significant association with SCS was found in c.46126G>T. The mean SCS of individuals with genotype KK was significantly lower than those of genotypes KL and LL. The results of combined genotypes analysis of three SNPs showed that HHLLNN genotype with the highest SCS was easily for the mastitis susceptibility, whereas GGKKMM genotype with the lowest SCS was favorable for the mastitis resistance. The information provided in the present study will be very useful for improving mastitis resistance in dairy cattle by marker-assisted selection (MAS).
Keywords:BRCA1  Breast cancer 1 gene  PCR-RFLP  Polymerase chain reaction-restriction fragment length polymorphism  CRS-PCR  Created restriction site PCR  SNPs  Single nucleotide polymorphisms  SCC  Somatic cell count  SCS  Somatic cell score  QTL  Quantitative trait loci  ESTs  Expressed sequence tags  STSs  Sequence tagged sites  WGS  Whole genome shotgun  GSS  Genome survey sequences  HTGS  High throughput genome sequences  SAS  Statistical analysis system  Tyr  Tyrosine acid  Asp  Aspartic acid  MAS  Marker-assisted selection
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