Recovery of methanotrophs from disturbance: population dynamics,evenness and functioning

Biodiversity is claimed to be essential for ecosystem functioning, but is threatened by anthropogenic disturbances. Prokaryotes have been assumed to be functionally redundant and virtually inextinguishable. However, recent work indicates that microbes may well be sensitive to environmental disturbance. Focusing on methane-oxidizing bacteria as model organisms, we simulated disturbance-induced mortality by mixing native with sterilized paddy soil in two ratios, 1:4 and 1:40, representing moderate and severe die-offs. Disturbed microcosms were compared with an untreated control. Recovery of activity and populations was followed over 4 months by methane uptake measurements, pmoA-qPCR, pmoA-based terminal restriction fragment length polymorphism and a pmoA-based diagnostic microarray. Diversity and evenness of methanotrophs decreased in disturbed microcosms, but functioning was not compromised. We consistently observed distinctive temporal shifts between type I and type II methanotrophs, and a rapid population growth leading to even higher cell numbers comparing disturbed microcosms with the control. Overcompensating mortality suggested that population size in the control was limited by competition with other bacteria. Overall, methanotrophs showed a remarkable ability to compensate for die-offs.     

Sodium dependence of growth and methane formation in Methanobacterium thermoautotrophicum

Methanobacterium thermoautotrophicum was found to require sodium for growth and for CO₂ reduction to methane. The dependence of the rate of growth and methane formation on the sodium concentration was hyperbolic with an apparent K _s for sodium of approximately 1 mM. The findings indicate that sodium has a specific function in the energy metabolism of this bacterium.     

Methanotrophs of the Psychrophilic Microbial Community of the Russian Arctic Tundra

In tundra, at a low temperature, there exists a slowly developing methanotrophic community. Methane-oxidizing bacteria are associated with plants growing at high humidity, such as sedge and sphagnum; no methanotrophs were found in polytrichous and aulacomnious mosses and lichens, typical of more arid areas. The methanotrophic bacterial community inhabits definite soil horizons, from moss dust to peat formed from it. The potential ability of the methanotrophic community to oxidize methane at 5°C enhances with the depth of the soil profile in spite of the decreasing soil temperature. The methanotrophic community was found to gradually adapt to various temperatures due to the presence of different methane-oxidizing bacteria in its composition. Depending on the temperature and pH, different methanotrophs occupy different econiches. Within a temperature range from 5 to 15°C, three morphologically distinct groups of methanotrophs could be distinguished. At pH 5–7 and 5–15°C, forms morphologically similar to Methylobacter psychrophilus predominated, whereas at the acidic pH 4–6 and 10–15°C, bipolar cells typical of Methylocella palustris were mostly found. The third group of methanotrophic bacteria growing at pH 5–7 and 5–10°C was represented by a novel methanotroph whose large coccoid cells had a thick mucous capsule.     

Reduction in hypoxia-reoxygenation-induced myocardial mitochondrial damage with exogenous methane

Albeit previous experiments suggest potential anti-inflammatory effect of exogenous methane (CH₄) in various organs, the mechanism of its bioactivity is not entirely understood. We aimed to investigate the potential mitochondrial effects and the underlying mechanisms of CH₄ in rat cardiomyocytes and mitochondria under simulated ischaemia/reperfusion (sI/R) conditions. Three-day-old cultured cardiomyocytes were treated with 2.2% CH₄-artificial air mixture during 2-hour-long reoxygenation following 4-hour-long anoxia (sI/R and sI/R + CH₄, n = 6-6), with normoxic groups serving as controls (SH and SH + CH₄; n = 6-6). Mitochondrial functions were investigated with high-resolution respirometry, and mitochondrial membrane injury was detected by cytochrome c release and apoptotic characteristics by using TUNEL staining. CH₄ admixture had no effect on complex II (CII)-linked respiration under normoxia but significantly decreased the complex I (CI)-linked oxygen consumption. Nevertheless, addition of CH₄ in the sI/R + CH4 group significantly reduced the respiratory activity of CII in contrast to CI and the CH₄ treatment diminished mitochondrial H₂O₂ production. Substrate-induced changes to membrane potential were partially preserved by CH₄, and additionally, cytochrome c release and apoptosis of cardiomyocytes were reduced in the CH₄-treated group. In conclusion, the addition of CH₄ decreases mitochondrial ROS generation via blockade of electron transport at CI and reduces anoxia-reoxygenation-induced mitochondrial dysfunction and cardiomyocyte injury in vitro.     

Decrease of the hydraulic conductivity of sand columns by Methanosarcina barkeri

The extent to which a methanogen can clog sand columns was examined: two permeameters packed with clean quartz sand were sterilized, saturated with water, inoculated with Methanosarcina barkeri and percolated under upward flow conditions. After approx. 5 months, the hydraulic conductivity of the sand had decreased to 3% and 25% of the highest values measured earlier. At that point, gas-filled regions in the sand were clearly visible through the transparent walls of the permeameters, and methane bubbles were continuously released from the columns into the effluent. Scanning electron microscopy observations and biomass assays indicated that cell mass accumulation did not contribute significantly to the observed decrease of the hydraulic conductivity. This decrease was therefore attributed to pore blocking due to the entrapment of methane bubbles.D. Sanchez de Lozada and P. Baveye are with the Department of Soil, Crop and Atmospheric Sciences, Bradfield Hall, Cornell University, Ithaca, NY 13853, USA; P. Vandevivere is with the College of Marine Studies, University of Delaware, Lewes, DE 19958, USA. S. Zinder is with the Department of Microbiology, Rice Hall, Cornell University, Ithaca, NY 14853, USA.     

Diel methane emission patterns from Scirpus lacustris and Phragmites australis

In mature Phragmites australis and Scirpus lacustris vegetated sediment methane was emitted almost exclusively by plant-mediated transport, whereas in unvegetated, but otherwise identical sediment, methane was emitted almost exclusively by ebullition. Diel variations in methane emission, with highest emission rates at daytime and emission peaks following sunrise, were demonstrated for Phragmites and Scirpus. The diel difference and magnitude of the emission peaks were much smaller for Scirpus than for Phragmites. In contrast to Phragmites, methane concentrations within Scirpus stems did not change significantly over the diel period. These patterns are consistent with a two-way transport mechanism for Phragmites (convective at daytime and diffusive at night-time) and an all day diffusive mechanism for Scirpus. The patterns could not be accounted for by diel variation in air and sediment temperature, plant transpiration, or photosynthetically coupled methane production. Comparison of the experimentally derived ratio of methane emission in helium and nitrogen under light and dark conditions with the theoretical derived ratio (calculated according to the kinetic theory of gases) confirmed the exploitation of the different transport mechanism for Phragmites and Scirpus. Methane emission from Phragmites correlated significantly with incident light, which probably drove the pressure differential associated with thermally induced convection. Decrease of the radial resistance of Scirpus stems for methane transport under light compared to dark conditions, in combination with morphological characteristics of the plant species, suggested that stomatal aperture, regulated by light, controls methane emission from Scirpus. Diel variation in bubble emission from the non-vegetated sediment coincided with sediment temperature changes. The results have important implications for sampling and scaling strategies for estimating methane emission from wetlands.     

A convenient method of isoflavonone synthesis

Reaction of 2-hydroxydeoxybenzoins with bis(dimethylamino)methane in ethanol results in isoflavonones.     

不饱和土壤CH4的吸收与氧化

不饱和土壤是已知唯一的 CH4 生物壑。综述了不饱和土壤 CH4 的吸收、氧化过程及其影响因素。不饱和土壤中 CH4 氧化的临界浓度低 ,因而甲烷氧化菌可氧化大气 CH4 并将其当作唯一的碳源和能源。土壤 CH4 吸收率与土壤湿度通常呈负相关关系。土壤湿度过高 ,大气 CH4 和 O2 向土壤中扩散受阻 ;或土壤湿度过低引起水分胁迫均导致甲烷氧化菌活性下降。NH 4对土壤中 CH4 氧化的抑制作用可归结为 NH3和 CH4 在甲烷单氧酶水平上的竞争、由氧化作用向硝化作用的转移以及 NH 4氧化生成的 NO- 2 的毒性。NH 4对 CH4 氧化的抑制作用与土壤有效氮含量成正比。各类氮肥对 CH4 氧化抑制作用 :化肥 >有机肥 ;铵态氮肥 >尿素。 NO- 3对 CH4 氧化没有抑制效应。阳离子代换量 (CEC)高的土壤 NH 4对 CH4 氧化的抑制作用轻。 CH4 氧化菌对大气 CH4 的高亲和力及 CH4 氧化所需较低的活化能导致其温度系数 Q1 0 较小。地温较低时 ,土壤氧化 CH4 的能力随温度升高而升高。当地温高于 CH4 氧化的最佳温度时 ,CH4 氧化菌难以与硝化细菌及其它微生物竞争利用土壤空气中的 O2 ,导致其活性降低。甲烷氧化菌对 p H值变化不敏感。团粒结构较好的壤土可保护 CH4 氧化菌免受干扰。未受干扰的森林土壤 CH4 氧化率的峰值一般出现在亚表     

糖蜜酒精废液厌氧生物降解性能的BMP分析

在中温条件下,对pH值和营养比例两个影响因素进行了糖蜜酒精废液的BMP分析,探讨酒精废液在厌氧消化过程中产甲烷量、COD浓度的变化情况,以及COD去除率与产气量、pH值之间的关系。研究结果表明,厌氧处理法能够使糖蜜酒精废液的有机负荷大大降低,CODcr去除率最高可达90．6％;在调节营养比例的条件下,pH=8．5时甲烷菌活性最佳,其中COD．P=300：1的产甲烷量最高。     

不同土壤水分含量下高寒草地CH4释放的比较研究

2003年6月30日～9月4日,利用密闭箱-气相色谱法,对发育于不同水分状况下的灌丛草甸(GC)、矮嵩草草甸(AC)、藏嵩草草甸(ZC)和季节性湿地(SD)的CH4释放速率进行了比较研究.结果表明,观测期间,季节性湿地处于淹水状态,其它三种土壤平均水分含量分别为39.6%(GC)、38.4%(AC)、65.9%(ZC),而CH4平均释放速率分别为-0.031±0.030(GC)、-0.026±0.018(AC)、1.103±0.240(ZC)和6.922±4.598 mg·m-2·h-1(SD),随着土壤水分含量的增加,高寒草地土壤CH4释放由吸收转为排放,表现出与土壤湿度很好的一致性.矮嵩草草甸不同处理CH4吸收强度AC＜AJ＜AL,它们之间的差异除与土壤水分有关,还可能与处理引起的CH4传输途径不同有关.实验期间,矮嵩草草甸和灌丛草甸土壤-植物系统分别吸收CH438.69和46.13 mg·m-2,是大气温室气体CH4的弱汇,藏嵩草草甸和季节性湿地则是大气温室气体CH4的源,分别排放CH4 1.641和10.30 g·m-2.