Characterization of the complete chloroplast genome of Zephyranthes phycelloides (Amaryllidaceae,tribe Hippeastreae) from Atacama region of Chile

Sporadic rains in the Atacama Desert reveal a high biodiversity of plant species that only occur there. One of these rare species is the “Red añañuca” (Zephyranthes phycelloides), formerly known as Rhodophiala phycelloides. Many species of Zephyranthes in the Atacama Desert are dangerously threatened, due to massive extraction of bulbs and cutting of flowers. Therefore, studies of the biodiversity of these endemic species, which are essential for their conservation, should be conducted sooner rather than later. There are some chloroplast genomes available for Amaryllidaceae species, however there is no complete chloroplast genome available for any of the species of Zephyranthes subgenus Myostemma. The aim of the present work was to characterize and analyze the chloroplast of Z. phycelloides by NGS sequencing. The chloroplast genome of the Z. phycelloides consists of 158,107 bp, with typical quadripartite structures: a large single copy (LSC, 86,129 bp), a small single copy (SSC, 18,352 bp), and two inverted repeats (IR, 26,813 bp). One hundred thirty-seven genes were identified: 87 coding genes, 8 rRNA, 38 tRNA and 4 pseudogenes. The number of SSRs was 64 in Z. phycelloides and a total of 43 repeats were detected. The phylogenetic analysis of Z. phycelloides shows a distinct subclade with respect to Z. mesochloa. The average nucleotide variability (Pi) between Z. phycelloides and Z. mesochloa was of 0.02000, and seven loci with high variability were identified: psbA, trnS^GCU-trnG^UCC, trnD^GUC-trnY^GUA, trnL^UAA-trnF^GAA, rbcL, psbE-petL and ndhG-ndhI. The differences between the species are furthermore confirmed by the high amount of SNPs between these two species. Here, we report for the first time the complete cp genome of one species of the Zephyranthes subgenus Myostemma, which can be used for phylogenetic and population genomic studies.     

GA3和Spd对杜鹃开花期光合特性和抗氧化系统的影响

为探讨GA_3和Spd对杜鹃(Rhododendron simsii)开花花期和开花品质的影响,研究了外源GA_3和Spd对杜鹃开花期光合特性和抗氧化系统的变化。结果表明,外源GA_3对花期有显著的提前作用,Spd对花期有明显的延迟作用,但两者均使花期延长、花径增大且成花率提高。GA_3和Spd处理提高了花期叶片的光合色素含量和净光合速率(Pn)、气孔导度(Gs)和胞间CO_2浓度(Ci);GA_3处理提高了叶片的蒸腾速率(Tr),而Spd使叶片的Tr下降,两者均有效缓解了末花期叶绿素含量的下降。GA_3和Spd处理显著降低了花瓣MDA含量,提高了抗氧化酶SOD、POD和CAT活性,并减缓了末花期SOD的下降,有效延缓了衰老进程,延长花期。以1 600 mg L~(–1) GA_3和0.10 mmol L~(-1) Spd处理效果较好,能有效提高杜鹃花的观赏品质。     

钾肥类型对菜心(菜薹)生长、细胞保护酶和内源激素的影响

为探讨钾肥类型对菜心(Brassica campestris L. ssp. chinensis var. utilis Tsen et Lee)的作用效应,研究了不同钾肥类型和水平对菜心生长、细胞保护酶和内源激素的影响。结果表明,氯化钾或硫酸钾处理可提高菜心叶片的POD 和CAT 活性、IAA 和GA₃ 含量,降低MDA 含量,提高菜薹产量。随着钾水平的提高,叶片IAA 和GA₃ 含量、POD 和CAT 活性以及菜薹质量明显提高,MDA 含量降低。当施钾90 kg hm^-2 时,叶片的GA₃ 和IAA 含量显著下降,而POD 活性和菜薹产量没有显著变化。在相同水平下,氯化钾与硫酸钾对植株生长、菜薹产量、叶片GA₃ 含量的影响不显著。当施钾0~90 kg hm^-2 时,氯化钾处理的叶片POD 活性显著高于硫酸钾处理;而施钾135~180 kg hm^-2 时,氯化钾处理的叶片POD 活性则显著低于硫酸钾处理。除了90 kg hm^-2 氯化钾处理的CAT 活性和45 kg hm^-2 氯化钾处理的MDA 含量低于硫酸钾处理以及90 kg hm^-2 和180 kg hm^-2 氯化钾处理的IAA 含量高于硫酸钾处理的外,相同水平氯化钾和硫酸钾处理的CAT 活性、MDA 含量和IAA 含量没有显著差异。可见,钾肥类型对菜心的活性氧代谢系统及内源激素含量有一定的影响,但氯化钾与硫酸钾对菜心的施用效果相当,生产上可采用氯化钾代替硫酸钾以节约肥料成本,K₂O 施用量以90 kg hm^-2 为宜。     

Modelling the genetic architecture of flowering time control in barley through nested association mapping

Background

Barley, globally the fourth most important cereal, provides food and beverages for humans and feed for animal husbandry. Maximizing grain yield under varying climate conditions largely depends on the optimal timing of flowering. Therefore, regulation of flowering time is of extraordinary importance to meet future food and feed demands. We developed the first barley nested association mapping (NAM) population, HEB-25, by crossing 25 wild barleys with one elite barley cultivar, and used it to dissect the genetic architecture of flowering time.

Results

Upon cultivation of 1,420 lines in multi-field trials and applying a genome-wide association study, eight major quantitative trait loci (QTL) were identified as main determinants to control flowering time in barley. These QTL accounted for 64% of the cross-validated proportion of explained genotypic variance (p_G). The strongest single QTL effect corresponded to the known photoperiod response gene Ppd-H1. After sequencing the causative part of Ppd-H1, we differentiated twelve haplotypes in HEB-25, whereof the strongest exotic haplotype accelerated flowering time by 11 days compared to the elite barley haplotype. Applying a whole genome prediction model including main effects and epistatic interactions allowed predicting flowering time with an unmatched accuracy of 77% of cross-validated p_G.

Conclusions

The elaborated causal models represent a fundamental step to explain flowering time in barley. In addition, our study confirms that the exotic biodiversity present in HEB-25 is a valuable toolbox to dissect the genetic architecture of important agronomic traits and to replenish the elite barley breeding pool with favorable, trait-improving exotic alleles.

     

Effect of irrigation with saline magnetized water and different soil amendments on growth and flower production of Calendula officinalis L. plants

Global climate change and increased population caused significant depletion of freshwater especially in arid and semi-arid regions including Saudi Arabia. Saline water magnetization before irrigation may help in alleviating the adverse effects of salinity on plants. The current study aimed to examine the potential beneficial effects of water magnetization and soil amendments on growth, productivity, and survival of Calendula officinalis L. plants. Three types of water (tap water “control”, well water, and magnetized well water) and two types of soil amendments (Fe₂SO₄ and peat moss) were examined. Our results showed that irrigating C. officinalis plants with saline well water (WW) adversely affected growth and flowering as compared to tap water (TW). However, plants irrigated with magnetized water (MW) showed significant enhancement in all the studied vegetative and flowering growth parameters as compared to those irrigated with WW. Furthermore, mineral contents and survival of C. officinalis plants irrigated with MW were higher than those irrigated with TW. Irrigation with MW significantly reduced levels of NA⁺ and Cl⁻ ions in leaves of C. officinalis plants indicating the role of magnetization in alleviating harmful effects of salinity. The current study showed that water magnetization enhanced water quality and increased plant’s ability to absorb water and nutrients. Further studies are needed to examine the possibility of irrigating food crops with magnetized water.     

Growth, senescence and water use efficiency of spring oilseed rape (Brassica napus L. cv. Mozart) grown in a factorial combination of nitrogen supply and elevated CO2

Atmospheric CO₂ enrichment is expected to affect the resource use efficiency of C3 plants with respect to water, nutrients and light in an interactive manner. The responses of oilseed rape (OSR) to elevated CO₂ have not much been addressed. Since the crop has low nitrogen use efficiency, the interactive effects of CO₂ enrichment and nitrogen supply deserve particular attention.Spring OSR was grown in climate chambers simulating the seasonal increments of day length and temperature in South-Western Germany. Three levels of N fertilisation representing 75, 150 and 225 kg ha⁻¹ and two CO₂ concentrations (380 and 550 μmol mol⁻¹) were used to investigate changes in source-sink relationships, plant development and senescence, water use efficiency of the dry matter production (WUE_prod.), allocation patterns to different fractions, growth, yield and seed oil contents. Seven harvests were performed between 72 and 142 days after sowing (DAS).Overall, plant performance in the chambers was comparable to the development under field conditions. While CO₂ responses were small in the plants receiving lowest N-levels, several significant N × CO₂ interactions were observed in the other treatments. Increasing the N availability resulted in longer flowering windows, which were furthermore extended at elevated CO₂ concentrations. Nevertheless, significantly less biomass was allocated to reproductive structures under elevated CO₂, while the vegetative C-storing organs continued to grow. At the final harvest shoot mass of the CO₂ exposed plants had increased by 9, 8 and 15% in the low, medium and high N treatments. Root growth was increased even more by 17, 43 and 33%, respectively and WUE_prod. increased by 23, 42 and 35%. At the same time, seed oil contents were significantly reduced by CO₂ enrichment in the treatments with ample N supply.Obviously, under high N-supply, the CO₂ fertilisation induced exaggerated growth of vegetative tissues at the expense of reproductive structures. The interruption of source-sink relationships stimulated the formation of side shoots and flowers (branching out). While direct effects of elevated CO₂ on flowering can be excluded, we assume that the increased growth under high N and CO₂ supply created nutrient imbalances which hence affected flowering and seed set.Nevertheless, the final seed macronutrient concentrations were slightly increased by elevated CO₂, indicating that remobilisation of nutrients from the sources (leaves) to the sinks (seeds) remained effective. These findings were supported by the lower nitrogen concentrations in senescing leaves and probably increased N remobilisation to other plant parts under elevated concentrations of CO₂. All the same, CO₂ enrichment caused a decline in seed oil contents, which may translate into a reduced crop quality.     

Patterns of tree phenological diversity in dry tropics

Recent phenological studies in tropical deciduous forests revealed a mosaic of vegetation composed of several pheno-phases that are evolved as an adaptation by the species to overcome seasonal drought in different ways. These pheno-phases represent extent of annual deciduousness (～leaflessness) and triggering factors for buds break (e.g. vegetative and flower). Thus, studying patterns of various pheno-phases (phonological diversity) in tropical forest have been thought to provide a potential tool to address critical questions related to climate change modeling and monitoring. In tropics, tree species represent a gradient of deciduousness (from leaf-exchanging species to >6 months deciduous species) and flowering initiation (breaking of flower buds in various part of annual cycle). Both processes are mostly triggered by variation in day length and/or temperature during late dry season/autumn, and/or first significant rain during rainy season. In addition, few factors like drought induced leaf fall and sporadic winter rains are supposed to affect these processes temporarily. Besides, the abundances of pheno-phases (i.e. leafing and flowering) also vary among tropical deciduous forest trees. Presence of such variations in tropical tree pheno-phases and their abundances are reported to vary due to micro-climatic variables and has specific implications in tropical forests. Present paper discusses the existing information on various pheno-phases and their abundances in tropical forests and role of climatic factors on tree phonological diversity. Further, we emphasized the need to develop predicting understanding of impending climatic change (i.e. precipitation and temperature) on diversity of pheno-phases by collecting long-term data on tree pheno-phases through a network of phonological stations in dry tropics.     

Genotypic variation in the persistence of transgenerational responses to seasonal cues*

Phenotypes respond to environments experienced directly by an individual, via phenotypic plasticity, or to the environment experienced by ancestors, via transgenerational environmental effects. The adaptive value of environmental effects depends not only on the strength and direction of the induced response but also on how long the response persists within and across generations, and how stably it is expressed across environments that are encountered subsequently. Little is known about the genetic basis of those distinct components, or even whether they exhibit genetic variation. We tested for genetic differences in the inducibility, temporal persistence, and environmental stability of transgenerational environmental effects in Arabidopsis thaliana. Genetic variation existed in the inducibility of transgenerational effects on traits expressed across the life cycle. Surprisingly, the persistence of transgenerational effects into the third generation was uncorrelated with their induction in the second generation. Although environmental effects for some traits in some genotypes weakened over successive generations, others were stronger or even in the opposite direction in more distant generations. Therefore, transgenerational effects in more distant generations are not merely caused by the retention or dissipation of those expressed in prior generations, but they may be genetically independent traits with the potential to evolve independently.     

小桐子花的性别与开花时间的相互关系

通过对小桐子(Jatropha curcas L.)花序上小花的开花顺序和小花性别的观察,发现其聚伞花序中心花的性别与其开花时间相关联,同时还和周围其它小花的性别有很大的相关性.中心花若在整个花序开花的第一天开放,仅有23.2%的可能是雌花;若在第二天及以后开放,有85%以上的可能为雌花.而中心花的性别又与其它花的性别相关,中心花如为雌花,那么聚伞花序上的其它小花有80%的可能性为雌花;但中心花若为雄花,那么整个聚伞花序上将不会再有雌花.研究小桐子的开花行为及性别控制规律,对于进一步人工调控小桐子花的性别表达,提高小桐子的产量、培育高产稳产品种,具有重要的应用价值.