Expectancy controlled sampling decisions in Vimba elongata

Synopsis Experimental data on snapping behavior of laboratory reared zährte, Vimba elongata, indicate that this species chooses between different food searching methods. If visibility is good, mainly directed snaps are employed for immediate food location. However, under conditions of reduced visibility undirected snapping and sampling methods are adopted. In the field, zährte may use sampling to acquire foraging benefits from stochastically distributed, hidden resources, like sediment dwelling prey. In the experiments this species continued to sample the bottom even in situations without any chance of prey detection. It is therefore concluded that zährte's searching decisions, apart from incorporating external information on prey occurrence, are controlled by internal expectations of long term benefits derived from sampling.     

Monitoring plant community change: an application of quadrat classification + discriminant analysis

A procedure for monitoring plant community change was described using data from 189 quadrats (each 0.09 m² in area) from or near 11 Carex exserta meadow sites in the high Sierra Nevada, California, USA. Initially the quadrats were agglomerated into five clusters by the flexible clustering strategy (beta=–0.25) with the standard absolute distance resemblance function. Data for each quadrat were cover percentages for C. exserta, other plants, litter, soil, gravel, and rock. The five clusters appeared to define a cover gradient, from quadrats with mostly gravel and rock to those with mostly C. exserta, and were accordingly designated pioneer, low seral, mid-seral, high seral, and climax.Classification functions (from discriminant analysis) are used with values of the variables to classify individual quadrats on sites used to monitor change. A site is characterized at repeated observations by the proportions of quadrats in each class. Within-class (low seral vs. low seral) rather than between-class (pioneer vs. low seral) tests are made for presence of change. Confidence intervals for differences in proportions of quadrats or individual quadrat probabilities of class membership are computed. If the confidence intervals do not cover zero, values for time one versus time two differ significantly.     

Flexible Analytic Wavelet Transform Based Features for Physical Action Identification Using sEMG Signals

ObjectivesElectromyography (EMG) is recording of the electrical activity produced by skeletal muscles. The classification of the EMG signals for different physical actions can be useful in restoring some or all of the lost motor functionalities in these individuals. Accuracy in classifying the EMG signal indicates efficient control of prosthesis.Material and methodsThe flexible analytic wavelet transform (FAWT) is used for classification of surface electromyography (sEMG) signals for identification of physical actions. FAWT is an efficient method for decomposition of sEMG signal into eight sub-bands, features namely neg-entropy, mean absolute value (MAV), variance (VAR), modified mean absolute value type 1 (MAV1), waveform length (WL), simple square integral (SSI), Tsallis entropy, integrated EMG (IEMG) are extracted from the sub-bands. Extracted features are fed into an extreme learning machine (ELM) classifier with sigmoid activation function.ResultsComprehensive experiments are conducted on the input sEMG signals and the accuracy, sensitivity and specificity scores are used for performance measurement. Experiments showed that among all sub-bands, the seventh sub-band provided the best performance where the recorded accuracy, sensitivity and specificity values were 99.36%, 99.36% and 99.93%, respectively. The comparison results showed best efficiency of proposed method as compared to other methods on the same dataset.ConclusionThis paper investigates the usage of the FAWT and ELM on sEMG signal classification. The results show that the proposed method is quite efficient in classification of the sEMG signals. It is also observed that the seventh sub-band of the FAWT provides the best discrimination property. In the future works, recent wavelet transform methods will be used for improving the classification performance.     

Numerical Models for the Simulation of Flexible Artificial Heart Valves: Part I - Computational Methods

Abstract

A numerical model of the coupled motion of a flexing surface in a high Reynolds number flow is presented for the simulation of flexible polyurethane heart valves in the aortic position. This is achieved by matching a Lagrangian dynamic leaflet model with a panel method based flow solver. The two models are coupled via the time-dependent pressure field using the unsteady Bernoulli equation.

Incorporation of sub-cycling in the dynamic model equations and fast pre conditioning techniques in the panel method solver yields efficient convergence and near real-time simulations of valve motion. The generality of dynamic model allows different material properties and/or geometries to be studied easily and interactively. This interactivity is realized by embedding the models within a design environment created using the software IRIS Explorer ^TM.

Two flow domains are developed, an infinite domain and an internal domain using conformal mapping theory. In addition bending stress on the valve is computed using a simple stress model based on spline and circle equation techniques.     

A Robust Water Potential Parameterisation

Abstract

We compare molecular dynamics simulation results for the properties of liquid water predicted by four novel water potential models. These models are designed as a combination of parameters taken from the dedicated but brittle TIP3P water potential, and the more flexible but less accurate parameterisations such as the Dreiding and Universal force fields. We find that a hybrid of Dreiding and TIP3P delivers the best results, yielding a density, diffusion coefficient and radial distribution function in good agreement with experiment, performing in some respects even better than the dedicated reference TIP3P model. Another Dreiding based force field predicts semi-quantitative results for the water structure and dynamics while the Universal force field based models are incapable of simulating a condensed phase of water at all, continuing to expand indefinitely. These observations are useful for selecting and designing robust water force field parameterisations that can be used for general simulation purposes.     

The Interference of Flexible Working Times with the Circadian Temperature Rhythm—a Predictor of Impairment to Health and Well‐Being?

In order to analyze whether impairments to health and well‐being under flexible working hours can be predicted from specific characteristics of the work schedules, periodic components in flexible working hours and their interference with the circadian temperature rhythm were analyzed applying univariate and bivariate spectrum analyses to both time series. The resulting indicators of spectral power and phase shift of these components were then related to reported health impairments using regression analysis. The results show that a suppression of both the 24 and the 168 h components in the work schedules (i.e., a lack of periodicity) can be used to predict reported health impairments, and that if there are relatively strong 24 and 168 h components left in the work schedules, their phase difference with the temperature rhythm (as an indicator of the interference between working time and the circadian rhythm) further predicts impairment. The results indicate that the periodicity of working hours and the amount of (circadian) desynchronization induced by flexible work schedules can be used for predicting the impairing effects of flexible work schedules on health and well‐being. The results can thus be used for evaluating and designing flexible shift rosters.     

Active site closure facilitates juxtaposition of reactant atoms for initiation of catalysis by human dUTPase

Human dUTPase, essential for DNA integrity, is an important survival factor for cancer cells. We determined the crystal structure of the enzyme:alpha,beta-imino-dUTP:Mg complex and performed equilibrium binding experiments in solution. Ordering of the C-terminus upon the active site induces close juxtaposition of the incoming nucleophile attacker water oxygen and the alpha-phosphorus of the substrate, decreasing their distance below the van der Waals limit. Complex interactions of the C-terminus with both substrate and product were observed via a specifically designed tryptophan sensor, suitable for further detailed kinetic and ligand binding studies. Results explain the key functional role of the C-terminus.     

Role of the 207-218 peptide region of Moloney murine leukemia virus integrase in enzyme catalysis

X-ray diffraction data on a few retroviral integrases show a flexible loop near the active site. By sequence alignment, the peptide region 207-218 of Mo-MLV IN appears to correspond to this flexible loop. In this study, residues H208, Y211, R212, Q214, S215 and S216 of Mo-MLV IN were mutated to determine their role on enzyme activity. We found that Y211A, R212A, R212K and Q214A decreased integration activity, while disintegration and 3′-processing were not significantly affected. By contrast H208A was completely inactive in all the assays. The core domain of Mo-MLV integrase was modeled and the flexibility of the region 207-216 was analyzed. Substitutions with low integration activity showed a lower flexibility than wild type integrase. We propose that the peptide region 207-216 is a flexible loop and that H208, Y211, R212 and Q214 of this loop are involved in the correct assembly of the DNA-integrase complex during integration.     

A new organic-inorganic hybrid framework containing octahedral hexarhenium cluster and its transformation by ligand exchange

A new organic-inorganic hybrid solid with 3-D framework, [Mn(DMF)₃]₂[Re₆Se₈(CN)₆] (1), has been synthesized and transformed to [H][Mn(salen)]₃[Re₆Se₈(CN)₆] (2) by a ligand exchange. Hexarhenium chalcocyanide clusters are closest packed in cubic symmetry for 1 and rhombohedral symmetry for 2. The manganese complexes in the interstitial sites are three-coordinated to the rhenium cluster in 1 and two-coordinated in 2.     

Two-dimensional Cu and first Pb coordination polymers based on a flexible 1,4-cyclohexanedicarboxylate ligand displaying different conformations and coordination modes

Two novel metal-organic hybrid coordination polymers {[Cu(bpo)(chdc)(H₂O)](H₂O)_0.5}_n (1) and [Pb(chdc)(H₂O)]_n (2) have been synthesized under different conditions and structurally characterized by single-crystal X-ray diffraction technique, where H₂chdc refers to a flexible 1,4-cyclohexanedicarboxylic acid ligand and bpo is 2,5-bis(4-pyridyl)-1,3,4-oxadiazole. Complex 1 has a two-dimensional (2-D) grid-like [11.28 × 13.63 Å²] framework in which the Cu^II centers are extended via bidentate bridging ligands bpo and e,e-trans-chdc along two directions, exhibiting large porous cavities. Coordination polymer 2 represents the first Pb^II complex of H₂chdc in which the larger Pb^II centers are connected by e,a-cis-chdc anions to afford a 2-D close-knit structure.