庞泉沟国家自然保护区森林群落木本植物种间关系的分析

应用基于二元数据的χ²检验、方差比率法和基于数量数据的Pearson相关系数检验及Spearman秩相关系数检验等数量方法,研究了庞泉沟国家级自然保护区(东经111°22′～111°33′,北纬37°45′～37°55′）森林群落（海拔1 600～2 430 m）21个优势种的种间关系。结果表明：研究区域内森林群落优势种群的种间关系较为松散（χ²_0.95N＜W＜χ²_0.05N）,种的分布相对独立,森林群落总体处于稳定阶段;但局部地段优势种群间存在着一定程度的竞争。位于山体中下部的群丛组Ⅰ、群丛组Ⅱ的总体关联性存在一定程度的负关联,但未达到显著水平; 位于山体上部的群丛组Ⅲ的总体关联性为无关联,种间关系较为松散。随着海拔的升高,三个群丛组的联结指数(VR)呈上升趋势,χ²检验显著率和Spearman秩相关检验的正负关联比有所增加,负显著率都明显下降,正显著率有升高的趋势,说明随着海拔的升高,种间关系表现为无关联,森林群落也趋于稳定。应用方差比率法与χ2检验、Pearson相关系数检验和Spearman秩相关系数检验较为清晰地揭示了庞泉沟自然保护区森林群落的种间关系。这四种方法可以互相弥补彼此的不足,结合使用效果更好。本研究结果支持随着群落演替进程的发展,群落结构及其种类组成将逐渐趋于完善和稳定,群落种群总体种间关系也将向着无关联发展的观点。     

Effects of dietary crude protein on fertility: Meta-analysis and meta-regression

Studies used to evaluate effects of dietary intervention on fertility may be subject to confounding because modification of one nutritional input requires a change in at least one other input. Meta-analytical modeling allows examination of a main intervention for a series of studies, but also an examination of a series of related effects through use of meta-regression. Effects of dietary crude protein (CP) on fertility were examined using this approach. We obtained 21 studies containing 32 comparisons that had pregnancy or conception data and met the eligibility criteria for meta-analysis of randomized controlled experiments providing information on diets used. Publications that contained data on prospective, randomized controlled experiments examining effects of dietary CP, either concentrations or degradability, or effects of a specific feed ingredient intervention on fertility were identified. Details on dietary formulation and diet intake were extracted from the publications, as were measures of urea in blood or plasma. Estimated fixed and random effects relative risks showed that risk of conception was lower in cows fed higher CP or more degradable CP diets (fixed effect (Mantel-Haenszel Relative Risk) = 0.91 (95% CI 0.84-0.98); P=0.019). This effect was homogenous (I² = 0) and not influenced by difference in blood urea N, duration of intervention, breed, parity, milk production or type of diet delivery. Significant associations among CP components of the diet and carbohydrate fractions supported the hypothesized potential for confounding, but only the amount of soluble CP eaten was a significant meta-regression covariate that reduced risk of conception. There was no evidence that the significant reduction in fiber or non-fiber carbohydrate (NFC) fractions of the diets associated with increased concentration of CP, soluble CP or rumen degradable fractions or soyabean products content of the diet influenced conception rates. Results support findings of experiments showing that increased intake of soluble CP reduced conception rates, and provides strong evidence that increased concentrations of CP or increased degradability of CP, within the ranges evaluated in the studies contributing to this meta-analysis, reduce the risk of conception in lactating dairy cattle.     

新疆艾比湖湿地自然保护区植物的生态分组

应用列联表的χ~2检验和Spearman相关系数研究了艾比湖湿地自然保护区植物的种间联结性和相关性.依据测定结果,将艾比湖湿地自然保护区的植物划分为4个生态种组:梭梭+盐节木+白麻+盐爪爪+琵琶柴+碱蓬+花花柴+骆驼刺+绢蒿+白刺+芦苇、小獐茅+多枝柽柳+滨藜+小叶碱蓬+盐豆木+鹅绒藤+盐穗木、胡杨+白梭梭、奶浆草+甘草+西北天门冬+赖草+罗布麻.各生态种组内,物种间具备最大的种问联结性和相关性.长期的演替过程使各生态种组对生境有最大的适应能力,各自分别生活于过渡带的盐化平原低地、湖滨盐沼地、荒漠和荒漠优势种间的阳斑.今后在艾比湖湿地自然保护区植物的保护和恢复中,以整个生态种组的角度出发较单个植物的保护和恢复更为有效.     

动物学定量与定性资料分析中的常见错误

合理选择正确的统计方法是提高科研工作质量和可信度的关键.然而有些科研工作所采用的统计方法往往不合理,甚至是错误的.例如,常常忽视定量资料中t-检验和方差分析的前提条件--正态性、方差齐性.对单因素多水平的定量资料直接使用组间两两比较的t-检验;对定性资料中列联表的分析一律通用Pearson χ~2检验,包括对Pearson χ~2检验结果的理解出现偏差,从而做出错误的推论.本文对国内一些动物学研究论文中所采用的具体统计方法提出辨析.     

Pro-inflammatory cytokine gene polymorphisms and threat for coronary heart disease in a North Indian Agrawal population

The association of IFN-γ (+ 874 A/T; rs2430561), TNF-α (− 308 G/A; rs1800629) and TNF-β (+ 252 A/G; rs909253) with Coronary Heart Disease (CHD) has not been rigorously tested in Indian population. In the present study we sought to examine the role of these cytokines in the causation of CHD and their association with conventional CHD risk factors. A total of 138 case and 187 unrelated healthy controls aged 35 to 80 years, matched on ethnicity and geography were collected from North Indian Agrawal population. Single nucleotide polymorphisms at the promoter TNF-α − 308 G/A and the intronic IFN-γ + 874 A/T were analyzed by allele-specific PCR, and the intronic TNF-β + 252 A/G was analyzed by RFLP. Of the three selected polymorphisms, genotypic distribution of IFN-γ + 874 A/T and TNF-β + 252 A/G polymorphisms was significantly different between patients and controls in the present study. OR revealed statistically significant risk for CHD with respect to IFN-γ + 874 T allele, whereas OR for TNF-β + 252 A/G showed three fold risk in homozygous condition though not significant. No such trend could be observed for TNF-α − 308 G/A polymorphism. Multivariate logistic regression after adjusting for all the confounders showed significant risk for CHD with the genotypes and genotypic combinations of all the three markers (albeit not significant with TNF-α). Increased risk for CHD was likely to be associated with interaction of IFN-γ with diastolic hypertension, TNF-α with diabetes and BMI, and TNF-β with serum triglyceride and very low density lipoprotein (VLDL) levels. The results suggest that these selected cytokine polymorphisms could possibly serve as potential bio-markers for CHD in conjunction with specific conventional risk factors.     

A thin-layer model for viscoelastic, stress-relaxation testing of cells using atomic force microscopy: do cell properties reflect metastatic potential?

Atomic force microscopy has rapidly become a valuable tool for quantifying the biophysical properties of single cells. The interpretation of atomic force microscopy-based indentation tests, however, is highly dependent on the use of an appropriate theoretical model of the testing configuration. In this study, a novel, thin-layer viscoelastic model for stress relaxation was developed to quantify the mechanical properties of chondrosarcoma cells in different configurations to examine the hypothesis that viscoelastic properties reflect the metastatic potential and invasiveness of the cell using three well-characterized human chondrosarcoma cell lines (JJ012, FS090, 105KC) that show increasing chondrocytic differentiation and decreasing malignancy, respectively. Single-cell stress relaxation tests were conducted at 2 h and 2 days after plating to determine cell mechanical properties in either spherical or spread morphologies and analyzed using the new theoretical model. At both time points, JJ012 cells had the lowest moduli of the cell lines examined, whereas FS090 typically had the highest. At 2 days, all cells showed an increase in stiffness and a decrease in apparent viscosity compared to the 2-h time point. Fluorescent labeling showed that the F-actin structure in spread cells was significantly different between FS090 cells and JJ012/105KC cells. Taken together with results of previous studies, these findings indicate that cell transformation and tumorigenicity are associated with a decrease in cell modulus and apparent viscosity, suggesting that cell mechanical properties may provide insight into the metastatic potential and invasiveness of a cell.     

Association study of AGER gene polymorphism and hypertension in Han Chinese population

Background

Advanced glycation end products (AGEs) are produced by non-enzymatic glycation or glycoxidation of proteins, lipids and nucleic acids. The bond of AGEs and the receptor of AGE (AGER) in a pro-oxidant environment could induce immune and inflammation reaction involved in progress of microvascular disease. Accumulated evidence warrant further study on AGE–AGER pathway and genetic susceptibility to hypertension (HT).

Methods

We designed a two-stage association study to evaluate the association of AGER polymorphism and HT. In stage 1, seven tagSNPs were tested in 524 cases and 531 controls and the significant SNPs (P < 0.05) would enter into stage 2 including 807 cases and 869 controls. Furthermore, joint analysis was performed for all 2731 subjects including 1331 cases and 1400 controls, and meta-analysis was applied to evaluate combined estimations from the subgroups of stage 1 and stage 2.

Results

In stage 1, rs204994 had significant association with HT (P < 0.05) and enter stage 2. Neither joint analysis nor meta-analysis found statistical association of rs204994 with HT after adjusted for the covariates in the whole population. However, further stratification analysis found that rs204994 was significantly associated with HT in < 50 years and ≥ 50 years groups, ORs (95%CI) of dominant model were 1.623 (1.054–2.500) and 0.721 (0.546–0.952) respectively. No significant correlation was found between blood pressure and the polymorphisms of rs204994.

Conclusions

Our data suggests that age might modulate the genetic effects of variation of rs204994 in AGER on HT and further replications in other populations and functional studies should be warranted.     

Trypanosoma cruzi: Impact of dual-clone infections on parasite biological properties in BALB/c mice

Herein, we have analyzed major biological properties following dual-clone Trypanosoma cruzi infections in BALB/c mice. Eight T. cruzi clonal stocks, two of each principal genotype, including genotype 19 and 20 (T. cruzi I), hybrid genotype 39 (T. cruzi) and 32 (T. cruzi II) were combined into 24 different dual-clone infections. Special attention was given to characterize biological parameters assayed including: prepatent period, patent period, maximum of parasitemia, day of maximum parasitemia, area under the parasitemia curve, infectivity, mortality, and hemoculture positivity. Our findings clearly demonstrated that features resultant of dual-clone infections of T. cruzi clonal stocks did not display either the characteristics of the corresponding monoclonal infections or the theoretical mixture based on the respective monoclonal infections. Significant changes in the expected values were observed in 4.2-79.2% of the mixtures considering the eight biological parameters studied. A lower frequency of significant differences was found for mixtures composed by phylogenetically distant clonal stocks. Altogether, our data support our hypothesis that mixed T. cruzi infections have a great impact on the biological properties of the parasite in the host and re-emphasizes the importance of considering the possible occurrence of natural mixed infections in humans and their consequences on the biological aspects of ongoing Chagas' disease.     

Monitoring indoor pollen over two years

The present study monitored a private apartment for pollen that had settled on the floor. Pollen was sampled and analysed from two rooms over a period of two years. The study showed that pollen accumulations indoors are dominated by wind-pollinated species reflecting the current flowering season. The adjacent vegetation and the cleaning activities influenced the pollen content. Pollen from zoophilous plants mostly originated from ornamental plants within the flat. Similarities and differences between the two rooms and the two years were observed. These findings have implications for forensic investigations as well as allergological research.     

Association study of CRP gene polymorphism and hypertension in Han Chinese population

Background

Serum C-reactive protein (CRP) and genetic variation of CRP gene have been reported as a strong, independent predictor of myocardial infarction and stroke. But there is rare association evidence of CRP genetic variation and hypertension (HT).

Methods

A community-based case–control study including 1331 cases with HT and 1400 controls was used to evaluate the association of tagSNPs covered CRP gene, CRPP1 gene and 40 kb upstream with HT in a Chinese Han population. Haplotypes and stratification analysis were applied to further evaluate relationships between the screened SNPs and HT and general linear model (GLM) was applied to compare blood pressure levels between genotypes.

Results

In stage 1, five SNPs had positive association with HT (P < 0.05) and entered stage 2 and two SNPs rs876537 and rs10737175 polymorphisms showed significant association with HT in joint sample. Haplotype analysis showed that comparing with common haplotype T–C which was constructed by rs6677719 and rs10737175, haplotype T–T significantly associated with HT after adjusted covariates. Stratification analysis found significant associations of HT for rs876537, rs2808630, rs6677719 and rs10737175 in ≥ 50 years group, rs876537, rs10737175 in female, rs876537 and rs10737175 in non-smoking and non-drinking populations as well as rs2808630 in non-drinking population. Furthermore, quantitative trait analysis indicated significant differences of SBP and DBP between the genotypes of rs10737175, rs876537 and rs2808630 in non-treatment hypertensive cases and control population.

Conclusions

The findings of this study support that CRP gene polymorphisms have significant association with genetic susceptibility of HT and quantitative traits of blood pressure.