mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species

Reconstructions of the human-African great ape phylogeny by using mitochondrial DNA (mtDNA) have been subject to considerable debate. One confounding factor may be the lack of data on intraspecific variation. To test this hypothesis, we examined the effect of intraspecific mtDNA diversity on the phylogenetic reconstruction of another Plio- Pleistocene radiation of higher primates, the fascicularis group of macaque (Macaca) monkey species. Fifteen endonucleases were used to identify 10 haplotypes of 40-47 restriction sites in M. mulatta, which were compared with similar data for the other members of this species group. Interpopulational, intraspecific mtDNA diversity was large (0.5%- 4.5%), and estimates of divergence time and branching order incorporating this variation were substantially different from those based on single representatives of each species. We conclude that intraspecific mtDNA diversity is substantial in at least some primate species. Consequently, without prior information on the extent of genetic diversity within a particular species, intraspecific variation must be assessed and accounted for when reconstructing primate phylogenies. Further, we question the reliability of hominoid mtDNA phylogenies, based as they are on one or a few representatives of each species, in an already depauperate superfamily of primates.      

Phylogeny of families in the Pectinoidea (Mollusca: Bivalvia): importance of the fossil record

The Triassic fossil record points to the monophyly of the Pectinoidea (scallops), all members of which have a triangular resilium with a nonmineralized medial core that functions below the hinge line. The elastic properties of this resilium in extant taxa predict that the initial adaptation of the Pectinoidea was to swimming. This is indeed corroborated by the shell form of Pernopecten , the earliest known pectinoidean genus, which ranged from late Devonian to earliest Triassic. The new family Entolioididae, a largely Triassic group, provides the missing link between the Pernopectinidae and the families Propeamussiidae, Entoliidae, and Pectinidae, all of which originated by the Middle Triassic and survive to the present day. A new Triassic genus Filamussium shows that the Propeamussiidae originated from the Entolioididae, not directly from the Pernopectinidae as previously supposed. Evidence from morphology, the fossil record, and molecular genetics indicates that the family Spondylidae originated in the Middle Jurassic from an ancestor within the Pectinidae, possibly the genus Spondylopecten , which was already present in the Late Triassic. Journal compilation © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 148 , 313–342. No claim to original US government works     

Rising concentrations of atmospheric CO2 have increased growth in natural stands of quaking aspen (Populus tremuloides)

As atmospheric CO₂ levels rise, temperate and boreal forests in the Northern Hemisphere are gaining importance as carbon sinks. Quantification of that role, however, has been difficult due to the confounding effects of climate change. Recent large‐scale experiments with quaking aspen (Populus tremuloides), a dominant species in many northern forest ecosystems, indicate that elevated CO₂ levels can enhance net primary production. Field studies also reveal that droughts contribute to extensive aspen mortality. To complement this work, we analyzed how the growth of wild aspen clones in Wisconsin has responded to historical shifts in CO₂ and climate, accounting for age, genotype (microsatellite heterozygosity), and other factors. Aspen growth has increased an average of 53% over the past five decades, primarily in response to the 19.2% rise in ambient CO₂ levels. CO₂‐induced growth is particularly enhanced during periods of high moisture availability. The analysis accounts for the highly nonlinear changes in growth rate with age, and is unaffected by sex or location sampled. Growth also increases with individual heterozygosity, but this heterozygote advantage has not changed with rising levels of CO₂ or moisture. Thus, increases in future growth predicted from previous large‐scale, common‐garden work are already evident in this abundant and ecologically important tree species. Owing to aspen's role as a foundation species in many North American forest ecosystems, CO₂‐stimulated growth is likely to have repercussions for numerous associated species and ecosystem processes.     

Control of coffee berry disease*

Field experiments comparing six spraying programmes and two fungicides for control of coffee berry disease were carried out at three sites during 1968. These established that protection of the crop by sprays applied throughout the long rains (February–July) gave the best control and increased yields threefold. Early season spray programmes, which reduced the sporulating capacity of the pathogen in coffee twigs, but which ceased before the end of the rainy season, gave no disease control in the late crop (harvested October-December) and yields were less than in unsprayed controls. All programmes which gave protection at the onset of the rains gave some disease control in the early crop (harvested June-August). Captafol (‘Ortho-Difolatan’ 80 WP) was better than a 50% copper formulation (‘Perenox’). Conditions suitable for infection, as determined from meteorological records, occurred frequently during both rainy seasons. Estimates of sporulating capacity and data from spore trappings showed that although inoculum from the bark might initiate an epidemic, subsequent disease progress was more dependent upon spores derived from diseased berries; these accounted for most of the inoculum dispersed during the greater part of the season. Removal of the early crop, which was very small, had no detectable effect on disease in the late crop. Although losses were greatest with early season spray programmes, these did nevertheless delay the onset of the epidemic. However, the subsequent rate of disease increase was greatest and ‘scab’ lesion formation least in these treatments. ‘Scab’ lesions were most abundant in those treatments which caused least delay; in unsprayed coffee, it appeared that early exposure to infection resulted in ‘scab’ lesion formation which subsequently retarded the rate of disease progress. Tree height was positively correlated with disease incidence, but there was little effect of tree aspect. Crop density had a small effect on disease incidence within branches.     

An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1

The Ser/Thr protein kinase PINK1 phosphorylates the well‐folded, globular protein ubiquitin (Ub) at a relatively protected site, Ser65. We previously showed that Ser65 phosphorylation results in a conformational change in which Ub adopts a dynamic equilibrium between the known, common Ub conformation and a distinct, second conformation wherein the last β‐strand is retracted to extend the Ser65 loop and shorten the C‐terminal tail. We show using chemical exchange saturation transfer (CEST) nuclear magnetic resonance experiments that a similar, C‐terminally retracted (Ub‐CR) conformation also exists at low population in wild‐type Ub. Point mutations in the moving β5 and neighbouring β‐strands shift the Ub/Ub‐CR equilibrium. This enabled functional studies of the two states, and we show that while the Ub‐CR conformation is defective for conjugation, it demonstrates improved binding to PINK1 through its extended Ser65 loop, and is a superior PINK1 substrate. Together our data suggest that PINK1 utilises a lowly populated yet more suitable Ub‐CR conformation of Ub for efficient phosphorylation. Our findings could be relevant for many kinases that phosphorylate residues in folded protein domains.     

From recommendation to action: psychosocial factors influencing physician intention to use Health Technology Assessment (HTA) recommendations

Background

The Evidence-Based Practice (EBP) Project has been investigating the implementation of evidence-based mental health practices (Assertive Community Treatment, Family Psychoeducation, Integrated Dual Diagnosis Treatment, Illness Management and Recovery, and Supported Employment) in state public mental health systems in the United States since 2001. To date, Project findings have yielded valuable insights into implementation strategy characteristics and effectiveness. This paper reports results of an effort to identify and classify state-level implementation activities and strategies employed across the eight states participating in the Project.

Methods

Content analysis and Greenhalgh et al's (2004) definition of innovation were used to identify and classify state-level activities employed during three phases of EBP implementation: Pre-Implementation, Initial Implementation and Sustainability Planning. Activities were coded from site visit reports created from documents and notes from key informant interviews conducted during two periods, Fall 2002 – Spring 2003, and Spring 2004. Frequency counts and rank-order analyses were used to examine patterns of implementation activities and strategies employed across the three phases of implementation.

Results

One hundred and six discreet implementation activities and strategies were identified as innovative and were classified into five categories: 1) state infrastructure building and commitment, 2) stakeholder relationship building and communications, 3) financing, 4) continuous quality management, and 5) service delivery practices and training. Implementation activities from different categories were employed at different phases of implementation.

Conclusion

Insights into effective strategies for implementing EBPs in mental health and other health sectors require qualitative and quantitative research that seeks to: a) empirically test the effects of tools and methods used to implement EBPs, and b) establish a stronger evidence-base from which to plan, implement and sustain such efforts. This paper offers a classification scheme and list of innovative implementation activities and strategies. The classification scheme offers potential value for future studies that seek to assess the effects of various implementation processes, and helps establish widely accepted standards and criteria that can be used to assess the value of innovative activities and strategies.     

Some epidemiological aspects of post-bloom fruit drop disease (Colletotrichum gloeosporioides) in citrus

Fluctuations in the incidence and amount of post-bloom fruit drop disease of citrus caused by Colletotrichum gloeosporioides in Belize prevent economic disease control. During the cooler drier months of the year when blossom infection is common there are variations in the incidence of rainfall and associated climatic parameters, and in the pattern of flowering. Large amounts of disease develop when periods of rain followed by prolonged wetness occur during peak blossoming periods. Blossoms are most susceptible during the open flower stage and infection of terminal flowers invariably results in infection of all other flowers on the spike. Disease incidence is greater in the lower parts of the trees, but flowering is greater in the upper regions. Large numbers of Colletotrichum spores are produced during wet conditions from apparently healthy leaves and from diseased flowers, but these rapidly lose viability when dried. Few spores are produced from old persistent calices (buttons). Although spores from leaves were a less potent inoculum source than those from flowers, they could provide the initial inoculum to commence flower infection when blossoming starts.