Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses

Cassava is infected by numerous geminiviruses in Africa and India that cause devastating losses to poor farmers. We here describe the molecular diversity of seven representative cassava mosaic geminiviruses (CMGs) infecting cassava from multiple locations in Tanzania. We report for the first time the presence of two isolates in East Africa: (EACMCV-[TZ1] and EACMCV-[TZ7]) of the species East African cassava mosaic Cameroon virus, originally described in West Africa. The complete nucleotide sequence of EACMCV-[TZ1] DNA-A and DNA-B components shared a high overall sequence identity to EACMCV-[CM] components (92% and 84%). The EACMCV-[TZ1] and -[TZ7] genomic components have recombinations in the same genome regions reported in EACMCV-[CM], but they also have additional recombinations in both components. Evidence from sequence analysis suggests that the two strains have the same ancient origin and are not recent introductions. EACMCV-[TZ1] occurred widely in the southern part of the country. Four other CMG isolates were identified: two were close to the EACMV-Kenya strain (named EACMV-[KE/TZT] and EACMV-[KE/TZM] with 96% sequence identity); one isolate, TZ10, had 98% homology to EACMV-UG2Svr and was named EACMV-UG2 [TZ10]; and finally one isolate was 95% identical to EACMV-[TZ] and named EACMV-[TZ/YV]. One isolate of African cassava mosaic virus with 97% sequence identity with other isolates of ACMV was named ACMV-[TZ]. It represents the first ACMV isolate from Tanzania to be sequenced. The molecular variability of CMGs was also evaluated using partial B component nucleotide sequences of 13 EACMV isolates from Tanzania. Using the sequences of all CMGs currently available, we have shown the presence of a number of putative recombination fragments that are more prominent in all components of EACMV than in ACMV. This new knowledge about the molecular CMG diversity in East Africa, and in Tanzania in particular, has led us to hypothesize about the probable importance of this part of Africa as a source of diversity and evolutionary change both during the early stages of the relationship between CMGs and cassava and in more recent times. The existence of multiple CMG isolates with high DNA genome diversity in Tanzania and the molecular forces behind this diversity pose a threat to cassava production throughout the African continent.     

A horizon scan of global conservation issues for 2012

Our aim in conducting annual horizon scans is to identify issues that, although currently receiving little attention, may be of increasing importance to the conservation of biological diversity in the future. The 15 issues presented here were identified by a diverse team of 22 experts in horizon scanning, and conservation science and its application. Methods for identifying and refining issues were the same as in two previous annual scans and are widely transferable to other disciplines. The issues highlight potential changes in climate, technology and human behaviour. Examples include warming of the deep sea, increased cultivation of perennial grains, burning of Arctic tundra, and the development of nuclear batteries and hydrokinetic in-stream turbines.     

Behaviour of Phytophthora cinnamomi Zoospores on Roots of Four Avocado Cultivars

Scanning electron microscopy was used to study the behaviour of Phytophthora cinnamomi zoospores on the roots of three tolerant avocado cultivars. Duke 7, G6 and Martin Grande, and a susceptible Edranol cultivar. Zoospores were attracted to the region of cell elongation and encysted on the roots of all cultivars studied. Adhesion of the zoospores appeared to be aided by root slime. Cysts usually produced one germ tube which penetrated the root directly, or formed an appressorium-like swelling before penetration occurred. Extensive growth of germ tubes occurred where zoospores germinated some distance behind the region of elongation. Cysts germinating behind this region often formed branched germ tubes and more than one appressorium-like swelling. There were no clear differences in the type of pre-penetration structures, formed by zoospore cysts, on the roots of the different avocado cultivars.     

Scanning Electron Microscopy of Conidium Formation of Stemphylium vesicarium on Onion Leaves

Onion leaves were inoculated with conidia of Stemphylium vesicarium and the development and morphology of conidiophores and conidia on the leaf surface were examined using scanning electron microscopy. Solitary, but usually fasciculate conidiophores emerged through the epidermis. Hyphae growing on or above the leaf surface also differentiated into conidiophores. Conidiophores were straight or flexuous, simple, smooth or verrucose and cylindrical but enlarged apically at the site of conidiumproduction. Smooth, round, bud-like conidial initials were produced singly at the apex of the verrucose conidiophores. As conidia matured, they became oblong to ovoid and densely verrucose. Once the mature conidium seceded, a small pore was visible at the, apex of the conidiogenous cell. Conidiophores proliferated percurrently at the distal region, forming secondary conidiophores and conidia.