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Anshuman Mishra Sheikh Nizamuddin Geethika Arekatla Satya Prakash Hemlata Dewangan Abishai Dominic Abhishek Mishra Digumarthi V. S. Sudhakar Narasimha R. Parine Nitin C. Tupperwar Kumarasamy Thangaraj 《PloS one》2015,10(5)
BackgroundVisceral leishmaniasis (VL) is a multifactorial disease, where the host genetics play a significant role in determining the disease outcome. The immunological role of anti-inflammatory cytokine, Interleukin 10 (IL10), has been well-documented in parasite infections and considered as a key regulatory cytokine for VL. Although VL patients in India display high level of IL10 in blood serum, no genetic study has been conducted to assess the VL susceptibility / resistance. Therefore, the aim of this study is to investigate the role of IL10 variations in Indian VL; and to estimate the distribution of disease associated allele in diverse Indian populations.MethodologyAll the exons and exon-intron boundaries of IL10 were sequenced in 184 VL patients along with 172 ethnically matched controls from VL endemic region of India.
Result and Discussion
Our analysis revealed four variations; rs1518111 (2195 A>G, intron), rs1554286 (2607 C>T, intron), rs3024496 (4976 T>C, 3’ UTR) and rs3024498 (5311 A>G, 3’ UTR). Of these, a variant g.5311A is significantly associated with VL (χ2=18.87; p =0.00001). In silico approaches have shown that a putative micro RNA binding site (miR-4321) is lost in rs3024498 mRNA. Further, analysis of the above four variations in 1138 individuals from 34 ethnic populations, representing different social and linguistic groups who are inhabited in different geographical regions of India, showed variable frequency. Interestingly, we have found, majority of the tribal populations have low frequency of VL (‘A’ of rs3024498); and high frequency of leprosy (‘T’ of rs1554286), and Behcet’s (‘A’ of rs1518111) associated alleles, whereas these were vice versa in castes. Our findings suggest that majority of tribal populations of India carry the protected / less severe allele against VL, while risk / more severe allele for leprosy and Behcet’s disease. This study has potential implications in counseling and management of VL and other infectious diseases. 相似文献2.
Mushtaq Hussain Syeda Qamarunnissa Saboohi Raza Javed Qureshi Abdul Wajid Sheikh A. Rasool 《Biologia》2009,64(5):852-858
DNA photolyase is perhaps the most ancient and direct arsenal in curing the UV-induced dimers formed in the microbial genome.
Out of two cofactors of the enzyme, catalytic and light harvesting, differences in the latter have provided basis for categorizing
photolyases of prokaryotes as folate and deazaflavin types. In the present study, the homology modeling of DNA photolyase
of Enterococcus faecalis was undertaken. The predicted models were structurally compared with the crystal structure coordinates of photolyases from
Escherichia coli (folate type) and Anacystis nidulans (deazaflavin type). Discrepancies present in the multiple sequence alignment and tertiary structures, particularly at the
light harvesting cofactor (methenyltetrahydrofolic acid, MTHF; 8-hydroxy-5-deazaflavin, 8-HDF) binding sites indicated the
mechanistic nature of enterococcal photolyase. Concisely, despite the greater holistic homology with folate-type photolyase,
enterococcal photolyase was characterized as deazaflavin-type. The presence of 8-HDF binding sites and groove architecture
of substrate binding sites were also found supportive in this regard. The inter cofactor distance and/or orientation also
implied to the efficient energy transfer in photolyase of Enterococcus in comparison with E. coli. In addition, we observed relatively high protein deformability in the enterococcal genome, which may favors the repair action
of photolyase. The findings are expected to provide molecular insights into the difference in sunlight inactivation rate of
two important fecal contamination indicators, namely Enterococcus and E. coli. 相似文献
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Abstract: The subunit structure of brain glutamate decarboxylase in cerebellum was investigated by using gel electrophoresis and antisera that specifically recognize the individual isoforms of brain glutamate decarboxylase (termed GAD65 and GAD67 ). The antisera were prepared against peptides that corresponded to amino acid sequences specific to each isoform. Each antiserum reacted specifically with the appropriate peptide in an ELISA and with the appropriate form of GAD on immunoblots. Nondenaturing gradient gel electrophoresis indicated that GAD is principally multimeric with monomeric forms comprising <3% of the total. Immunoprecipitation and immunoaffinity chromatography experiments were performed with antisera W624 and W883, which were prepared against peptides specific to GAD65 and GAD67 , respectively. Immunoprecipitates prepared from cerebellar supernatants with W624 contained both GAD65 and GAD67 , whereas some GAD67 was left in the supernatant. In a similar manner, immunoprecipitates prepared with W883 contained both GAD65 and GAD67 , whereas some GAD65 remained in the supernatant. In addition, immunoaffinity columns prepared with either W624 or W883 retained both GAD65 and GAD67 even after extensive washing. These results are consistent with the presence of heteromultimers of GAD65 and GAD67 in cerebellum in addition to homomers of each form. 相似文献
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Heidari Reza Farajzadeh Sheikh Ahmad Hashemzadeh Mohammad Farshadzadeh Zahra Salmanzadeh Shokrollah Saki Morteza 《Molecular biology reports》2022,49(5):3811-3822
Molecular Biology Reports - This study was aimed to evaluate the antibiotic resistance, biofilm formation, and genetic diversity of carbapenem-resistant Pseudomonas aeruginosa (CRPA) strains... 相似文献