Simulating the effects of N availability, straw particle size and location in soil on C and N mineralization

Predicting the C and N mineralization of straw added to soil is important for forecasting subsequent soil N availability during and between crop growth cycles. The decomposition module of the STICS model, parameterized under optimal conditions, was used to predict straw decomposition in sub-optimal conditions, i.e. when contact between soil and residue was poor (due to large size residues or surface placement) or when mineral N availability was restricted. The data used in the simulations were obtained from published studies of effects of residue size, location and N availability on C and N mineralization from straw under controlled laboratory conditions. We selected studies in which the dynamics of C and N mineralization were measured simultaneously. The dynamics of straw mineralization could be well predicted by the model under optimal conditions with standard parameter values as derived from measured C/N ratios of the residues, but not under sub-optimal conditions which required a new parameterization. A good fit could be obtained on these treatments by a marked reduction in the rate constants of residue and microbial biomass decomposition and a marked increase in the microbial biomass C/N ratio. Our results show the need to include in decomposition models routines for simulating effects of spatial heterogeneity of residue distribution, different particle sizes and limiting N availability.     

Short-term immobilisation and crop uptake of fertiliser nitrogen applied to winter wheat: effect of date of application in spring

Previous studies on the fate of fertiliser nitrogen applied to winter wheat in temperate climates have shown that nitrogen (N) applied early, at tillering for wheat, was less efficiently taken up than N applied later in the growth cycle. We examined the extent to which the soil microbial N immobilisation varied during the wheat spring growth cycle and how microbial immobilisation and plant uptake competed for nitrogen. We set up a pulse-15N labelled field experiment in which N was applied at eight development stages from tillering (beginning of March) to anthesis (mid-June). Each application was 50 kg N ha-1 as 15N labelled urea except for the first application which was 25 kg N ha-1. The distribution of fertiliser 15N in shoots, roots, mineral and organic soil N was examined by destructive sampling 7 and 14 days after each 15N pulse. The inorganic 15N pool was almost depleted by day 14. The N uptake efficiency increased with later applications from 45% at tillering to 65% at flowering. N immobilisation was rather constant at 13–16% of N applied, whatever the date of application. The increase in plant 15N uptake resulted in an increase in the total 15N recovery in the plant-soil system (15N in soil +15N in plant), suggesting that gaseous losses were lower at the later application dates.     

Shifts between Nitrospira‐ and Nitrobacter‐like nitrite oxidizers underlie the response of soil potential nitrite oxidation to changes in tillage practices

Despite their role in soil functioning, the ecology of nitrite‐oxidizing bacteria, NOB, and their response to disturbances such as those generated by agricultural practices are scarcely known. Over the course of 17 months, we surveyed the potential nitrite oxidation, PNO, the abundance of the Nitrobacter‐ and Nitrospira‐like NOB (by quantitative PCR) and the community structure of the Nitrobacter‐like NOB (by PCR‐DGGE and cloning‐sequencing targeting the nxrA gene) in soils for four treatments: after establishment of tillage on a previously no‐tillage system, after cessation of tillage on a previously tillage system, and on control tillage and no‐tillage systems. Key soil variables (moisture, organic carbon content and gross mineralization – i.e. ammonification – measured by the ¹⁵N dilution technique) were also surveyed. PNO was always higher for the no‐tillage than tillage treatments. Establishment of tillage led to a strong and rapid decrease in PNO whereas cessation of tillage did not change PNO even after 17 months. PNO was strongly and positively correlated to the abundance of Nitrobacter‐like NOB and was also strongly related to gross mineralization, a proxy of N‐availability; in contrast, PNO was weakly and negatively correlated to the abundance of Nitrospira‐like NOB. Selection of a dominant population was observed under no‐tillage, and PNO was loosely correlated to the community structure of Nitrobacter‐like NOB. Our results demonstrate that Nitrobacter‐like NOB are the key functional players within the NOB community in soils with high N availability and high activity level, and that changes in PNO are due to shifts between Nitrospira‐like and Nitrobacter‐like NOB and to a weaker extent by shifts of populations within Nitrobacter‐like NOB.     

Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2O emissions

Simulation models are extensively used to predict agricultural productivity and greenhouse gas emissions. However, the uncertainties of (reduced) model ensemble simulations have not been assessed systematically for variables affecting food security and climate change mitigation, within multi‐species agricultural contexts. We report an international model comparison and benchmarking exercise, showing the potential of multi‐model ensembles to predict productivity and nitrous oxide (N₂O) emissions for wheat, maize, rice and temperate grasslands. Using a multi‐stage modelling protocol, from blind simulations (stage 1) to partial (stages 2–4) and full calibration (stage 5), 24 process‐based biogeochemical models were assessed individually or as an ensemble against long‐term experimental data from four temperate grassland and five arable crop rotation sites spanning four continents. Comparisons were performed by reference to the experimental uncertainties of observed yields and N₂O emissions. Results showed that across sites and crop/grassland types, 23%–40% of the uncalibrated individual models were within two standard deviations (SD) of observed yields, while 42 (rice) to 96% (grasslands) of the models were within 1 SD of observed N₂O emissions. At stage 1, ensembles formed by the three lowest prediction model errors predicted both yields and N₂O emissions within experimental uncertainties for 44% and 33% of the crop and grassland growth cycles, respectively. Partial model calibration (stages 2–4) markedly reduced prediction errors of the full model ensemble E‐median for crop grain yields (from 36% at stage 1 down to 4% on average) and grassland productivity (from 44% to 27%) and to a lesser and more variable extent for N₂O emissions. Yield‐scaled N₂O emissions (N₂O emissions divided by crop yields) were ranked accurately by three‐model ensembles across crop species and field sites. The potential of using process‐based model ensembles to predict jointly productivity and N₂O emissions at field scale is discussed.     

Vinasse organic matter quality and mineralization potential, as influenced by raw material, fermentation and concentration processes

Both dilute and concentrated vinasse can be spread on agricultural fields or used as organic fertilizer. The effects of different characteristics of the original raw material on the biochemical composition of vinasse and their C and N mineralization in soil were investigated. Vinasse samples were obtained from similar industrial fermentation processes based on the growth of microorganisms on molasses from different raw material (sugar beet or sugar cane) and vinasse concentration (dilute or concentrated). The nature of the raw material used for fermentation had the greatest effect on the nature and size of the resistant organic pool. This fraction included aromatic compounds originating from the raw material or from complex molecules and seemed to be quantitatively related to acid-insoluble N. Samples derived from sugar beet were richer in N compounds and induced greater net N mineralization. The effect of evaporation varied with the nature of the raw material. Concentration led to a slight increase in the abundance of phenolic compounds, acid-insoluble fraction, and a slight decrease in the labile fraction of vinasses partly or totally derived from sugar beet. The effect of the dilute vinasse from sugar cane was greater. The concentrated vinasse had a smaller labile fraction, induced N immobilization at the beginning of incubation, and exhibited greater N concentration in the acid-insoluble fraction than the dilute vinasse.     

The fate of labelled15N urea and ammonium nitrate applied to a winter wheat crop

Labelled urea or ammonium nitrate was applied to winter wheat growing on a loamy soil in Northern France. Two applications of fertilizer were given: 50 kg N ha^–1 at tillering (early March) and 110 kg N ha^–1 at the beginning of stem elongation (mid-April). The kinetics of urea hydrolysis, nitrification of ammonium and the disappearance of inorganic nitrogen were followed at frequent intervals. Inorganic nitrogen soon disappeared, mainly immobilized by soil microflora and absorbed by the crop. Net immobilization of fertilizer N occured at a very similar rate for urea and ammonium nitrate. Maximum immobilization (16 kg N ha¹) was found at harvest for the first dressing and at anthesis for the second dressing (23 kg N ha¹). During the nitrification period, the labelled ammonium pool was immobilized two to three times faster than the labelled nitrate pool. No significant net¹⁵N remineralization was found during the growth cycle.The actual denitrification and volatilization losses were probably more important than indicated from calculations made by extrapolation of fluxes measured over short intervals. However microbial immobilization was the most important of the processes which compete with plant uptake for nitrogen.     

Miscanthus × giganteus leaf senescence,decomposition and C and N inputs to soil

Energy crops are currently promoted as potential sources of alternative energy that can help mitigate the climate change caused by greenhouse gases (GHGs). The perennial crop Miscanthus × giganteus is considered promising due to its high potential for biomass production under conditions of low input. However, to assess its potential for GHG mitigation, a better quantification of the crop's contribution to soil organic matter recycling under various management systems is needed. The aim of this work was to study the effect of abscised leaves on carbon (C) and nitrogen (N) recycling in a Miscanthus plantation. The dynamics of senescent leaf fall, the rate of leaf decomposition (using a litter bag approach) and the leaf accumulation at the soil surface were tracked over two 1‐year periods under field conditions in Northern France. The fallen leaves represented an average yearly input of 1.40 Mg C ha^?1 and 16 kg N ha^?1. The abscised leaves lost approximately 54% of their initial mass in 1 year due to decomposition; the remaining mass, accumulated as a mulch layer at the soil surface, was equivalent to 7 Mg dry matter (DM) ha^?1 5 years after planting. Based on the estimated annual leaf‐C recycling rate and a stabilization rate of 35% of the added C, the annual contribution of the senescent leaves to the soil C was estimated to be approximately 0.50 Mg C ha^?1yr^?1 or 10 Mg C ha^?1 total over the 20‐year lifespan of a Miscanthus crop. This finding suggested that for Miscanthus, the abscised leaves contribute more to the soil C accumulation than do the rhizomes or roots. In contrast, the recycling of the leaf N to the soil was less than for the other N fluxes, particularly for those involving the transfer of N from the tops of the plant to the rhizome.     

The partitioning of fertilizer-N between soil and crop: Comparison of ammonium and nitrate applications

Field experiments were carried out in 1987 on winter wheat crops grown on three types of soil. ¹⁵N-labelled urea, ¹⁵NH₄NO₃ or NH₄ ¹⁵NO₃ (80 kg N ha^-1) was applied at tillering. The soils (chalky soil, hydromorphic loamy soil, sandy clay soil) were chosen to obtain a range of nitrogen dynamics, particularly nitrification. Soil microbial N immobilization and crop N uptake were measured at five dates. Shortly after fertilizer application (0–26 days), the amount of N immobilized in soil were markedly higher with labelled urea or ammonium than that with nitrate in all soils. During the same period, crop ¹⁵N uptake occurred preferentially at the expense of nitrate. Nitrification differed little between soils, the rates were 2.0 to 4.7 kg N ha^-1 day^-1 at 9°C daily mean temperature. The differences in immobilization and uptake had almost disappeared at flowering and harvest. ¹⁵N recovery in soil and crop varied between 50 and 100%. Gaseous losses probably occurred by volatilization in the chalky soil and denitrification in the hydromorphic loamy soil. These losses affected the NH₄ ⁺ and NO₃ ^- pools differently and determined the partitioning of fertilizer-N between immobilization and absorption.     

Relationship between rate of crop growth at date of fertiliser N application and fate of fertiliser N applied to winter wheat

To investigate the relationship between the timing of fertiliser N applications and the N use efficiency of wheat, three field experiments with ¹⁵N were set up on winter wheat, on three different soils in France. Different crop N demands on the day of fertiliser application were obtained by varying either crop densities or date of fertiliser application. Labelled ¹⁵NH₄ ¹⁵NO₃ was applied at tillering and during stem elongation. The ¹⁵N recovered from plant and soil at different dates after ¹⁵N addition and at maturity of wheat was measured. The fate of fertiliser N was rapidly determined, most of the fertiliser N accumulated in the wheat at maturity having been taken up within a few days of application. ¹⁵N recovery by the crop at final harvest (%) varied greatly (19–55% N applied) according to crop density, soil type and date of application. It was linearly related to the instantaneous crop growth rate calculated at the day of ¹⁵N application. The amount of fertiliser N immobilised in the soil was constant at 20 kg N ha⁻¹, for all soil types and crop densities. Because residual mineral ¹⁵N in the soil at harvest was negligible and immobilisation was constant, the level of total ¹⁵N measured in the different N pools (soil+plant) reflected the% ¹⁵N uptake by the plant. There was consequently a negative linear relationship between the percentage of ¹⁵N not recovered for measurement, and crop growth rate (i.e. crop N demand) at date of fertiliser application. These results suggest that crop N demand at the time of N application determines the ability of the crop to compete for N with other processes, and may be a major factor determining the division of N between soil and crop. This revised version was published online in June 2006 with corrections to the Cover Date.     

Carbon mineralization in soil of roots from twenty crop species,as affected by their chemical composition and botanical family

Background and aims

Plant growth-promoting rhizobacteria (PGPR) have been widely studied for agricultural applications. One aim of this study was to isolate cadmium (Cd)-tolerant bacteria from nodules of Glycine max (L.) Merr. grown in heavy metal-contaminated soil in southwest of China. The plant growth-promoting (PGP) traits and the effects of the isolate on plant growth and Cd uptake by legume and non-legume plants in Cd-polluted soil were investigated.

Methods

Cd-tolerant bacteria were isolated by selective media. The isolates were identified by 16S rRNA gene and phylogenetic analysis. The PGR traits of the isolates were evaluated in vitro. Cd in soil and plant samples was determined by ICP-MS.

Results

One of the most Cd-tolerant bacteria simultaneously exhibited several PGP traits. Inoculation with the PGPR strain had positive impacts on contents of photosynthesis pigments and mineral nutrients (Fe or Mg) in plant leaves. The shoot dry weights of Lolium multiflorum Lam. increased significantly compared to uninoculated control. Furthermore, inoculation with the PGPR strain increased the Cd concentrations in root of L. multiflorum Lam. and extractable Cd concentrations in the rhizosphere, while the Cd concentrations in root and shoot of G. max (L.) Merr. significantly decreased.

Conclusions

This study indicates that inoculation with Cd-tolerant PGPR can alleviate Cd toxicity to the plants, increase Cd accumulation in L. multiflorum Lam. by enhancing Cd availability in soils and plant biomass, but decrease Cd accumulation in G. max (L.) Merr. by increasing Fe availability, thus highlighting new insight into the exploration of PGPR on Cd-contaminated soil.