Making water flow: a comparison of the hydrodynamic characteristics of 12 different benthic biological flumes

Flume tanks are becoming increasingly important research tools in aquatic ecology, to link biological to hydrodynamical processes. There is no such thing as a “standard flume tank”, and no flume tank is suitable for every type of research question. A series of experiments has been carried out to characterise and compare the hydrodynamic characteristics of 12 different flume tanks that are designed specifically for biological research. These facilities are part of the EU network BioFlow. The flumes could be divided into four basic design types: straight, racetrack, annular and field flumes. In each facility, two vertical velocity profiles were measured: one at 0.05 m s⁻¹ and one at 0.25 m s⁻¹. In those flumes equipped with Acoustic Doppler Velocimeters (ADV), time series were also recorded for each velocity at two heights above the bottom: 0.05 m and 20% of the water depth. From these measurements turbulence characteristics, such as TKE and Reynolds stress, were derived, and autocorrelation spectra of the horizontal along-stream velocity component were plotted. The flume measurements were compared to two sets of velocity profiles measured in the field.Despite the fact that some flumes were relatively small, turbulence was fully developed in all channels. Straight and racetrack flumes generally produced boundary layers with a clearly definable logarithmic layer, similar to measurements in the field taken under steady flow conditions. The two annular flumes produced relatively thin boundary layers, presumably due to secondary flows developing in the curved channels. The profiles in the field flumes also differed considerably from the expected log profile. This may either have been due the construction of the flume, or due to unsteady conditions during measurement. Constraints imposed by the different flume designs on the suitability for different types of boundary layer research, as well as scaling issues are discussed.     

Environmental and behavioural factors affecting activity in the intertidal gastropod Hydrobia ulvae

Laboratory microcosms were used to investigate the mud snail Hydrobia ulvae (Pennant) bioturbation activities and behavioural changes in response to snail density, algal food, sediment moisture content, light regime and water cover conditions. Density-dependent kinetics of bioturbated muddy areas were described by von Bertalanffy equations, which provided reliable estimates of mud surface covering rates by snail tracks (m² h⁻¹ snail⁻¹). Snails need a wet habitat to be active either covered by seawater or by moving in fluid layers for low-tide conditions. Light and microphytobenthic biomass, which are less potent to affect snail activity, are positively interrelated to increase covering rates in the tested chl a concentrations within the range of 1-15 μg g⁻¹. Experimental results suggested us the relevance of microphytobenthos migration processes in affecting crawling activities of H. ulvae that appeared to adjust their foraging efforts in response to benthic algal biomass. Behavioural processes of H. ulvae, in terms of floating, crawling, burrowing and inactive snails, were described using a Markov model. Finally, an empirical model based on von Bertalanffy equations was proposed to describe kinetics of sediment covering by snail tracks under the influences of snail density, sediment moisture content, chl a concentrations and the four combinations of presence/absence of light and seawater. This model should provide a base for further development of a hydrosedimentary model to simulate the effects of H. ulvae bioturbation activities on the resuspension of the intertidal cohesive sediment-water interface for various in situ conditions.     

Influence of the mode of macrofauna-mediated bioturbation on the vertical distribution of living benthic foraminifera: First insight from axial tomodensitometry

We investigated the influence of bioturbation by macrofauna on the vertical distribution of living (stained) benthic foraminifera in marine intertidal sediments. We investigated the links between macrofaunal bioturbation and foraminiferal distribution, by sampling from stations situated on a gradient of perturbation by oyster-farming, which has a major effect on benthic faunal assemblages. Sediment cores were collected on the French Atlantic coast, from three intertidal stations: an oyster farm, an area without oysters but affected by oyster biodeposits, and a control station. Axial tomodensitometry (CT-scan) was used for three-dimensional visualization and two-dimensional analysis of the cores. Biogenic structure volumes were quantified and compared between cores. We collected the macrofauna, living foraminifera, shells and gravel from the cores after scanning, to validate image analysis. We did not investigate differences in the biogenic structure volume between cores. However, biogenic structure volume is not necessarily proportional to the extent of bioturbation in a core, given that many biodiffusive activities cannot be detected on CT-scans. Biodiffusors and larger gallery-diffusors were abundant in macrofaunal assemblage at the control station. By contrast, macrofaunal assemblages consisted principally of downward-conveyors at the two stations affected by oyster farming. At the control station, the vertical distribution of biogenic structures mainly built by the biodiffusor Scorbicularia plana and the large gallery-diffusor Hediste diversicolor was significantly correlated with the vertical profiles of living foraminifera in the sediment, whereas vertical distributions of foraminifera and downward-conveyors were not correlated at the station affected by oyster farming. This relationship was probably responsible for the collection of foraminifera in deep sediment layers (> 6 cm below the sediment surface) at the control station. As previously suggested for other species, oxygen diffusion may occur via the burrows built by S. plana and H. diversicolor, potentially increasing oxygen penetration and providing a favorable microhabitat for foraminifera in terms of oxygen levels. By contrast, the absence of living foraminifera below 6 cm at the stations affected by oyster farming was probably associated with a lack of biodiffusor and large gallery-diffusor bioturbation. Our findings suggest that the effect of macrofaunal bioturbation on the vertical distribution of foraminiferal assemblages in sediments depends on the effects of the macrofauna on bioirrigation and sediment oxidation, as deduced by Eh values, rather than on the biogenic structure volume produced by macrofauna. The loss of bioturbator functional diversity due to oyster farming may thus indirectly affect infaunal communities by suppressing favorable microhabitats produced by bioturbation.     

Fluff deposition on intertidal sediments: effects on benthic biota, ammonium fluxes and nitrification rates

The effects of fluff deposit on benthic biota,NH₄ ⁺ fluxes and nitrification was studied in thelaboratory using waterlogged and reflooded intertidal sediments fromMarennes-Oléron Bay, France. The fluff deposit was enriched inNH₄ ⁺ compared to underlying sediments, and promotedchanges of the sediment pH, E_h, C:N ratio, C:chla ratio and the NH₄ ⁺ efflux tooverlying water. Statistical analysis showed that pore waterNH₄ ⁺ concentrations were strongly influenced byinteractions between fluff, drying, depth and bioturbation. The fluff depositresulted in anoxia in the top sediments and moved the nitrification zone tosurface layers in fluff. However, the NH₄ ⁺ enrichment influff did not significantly change actual nitrification rates (range 0–1mmol m^–2 d^–1) or potentialnitrification rates (range 3–11 mmolNO₃ ^– m^–2d^–1).     

Secondary settlement of cockles Cerastoderma edule as a function of current velocity and substratum: a flume study with benthic juveniles

Some newly-settled bivalve molluscs can experience a second dispersal stage in the water column and colonize areas distant from initial settlement zone ('secondary settlement'). To document mechanisms involved in such a process, experiments were conducted in a recirculating 13-m flume, using juvenile cockles Cerastoderma edule (shell length between 0.8 and 5.7 mm). After 4 h and under current surface velocities of 10, 20 and 24 cm s^?1, all juveniles left the plexiglass substratum (site of initial introduction) and 42.4, 58.6 and 76.2% of juveniles, respectively, were retrieved from a downstream sand area (which only represented 7.7% of the total flume surface). Naked-eye observations showed that smaller individuals were borne within the water column, whereas larger individuals tended to roll or slip on the substratum. Byssus threads produced by the juveniles were often seen, sometimes covered in sand grains. These observations were confirmed by finding larger juveniles in the upstream part of the sand area. When sand was replaced by mud, a reduced proportion of cockles was retrieved in the experimental substratum (18.4, 20.0 and 16.4%, respectively). Observations showed that juveniles rarely succeeded in anchoring themselves in mud. When initially introduced on a favourable substratum (medium sand), more than 87% of juveniles were retrieved from that sand array at all flow velocities. This study shows that secondary settlement occurs for juvenile cockles up to 5.7 mm in shell length and depends not only on flow velocity but on substratum type.     

Noninvasive Doppler-derived myocardial performance index in rats with myocardial infarction: validation and correlation by conductance catheter

The rodent model of myocardial infarction (MI) is extensively used in heart failure studies. However, long-term follow-up of echocardiographic left ventricular (LV) function parameters such as the myocardial performance index (MPI) and its ratio with the fractional shortening (LVFS/MPI) has not been validated in conjunction with invasive indexes, such as those derived from the conductance catheter (CC). Sprague-Dawley rats with left anterior descending coronary artery ligation (MI group, n = 9) were compared with a sham-operated control group (n = 10) without MI. Transthoracic echocardiography (TTE) was performed every 2 wk over an 8-wk period, after which classic TTE parameters, especially MPI and LVFS/MPI, were compared with invasive indexes obtained by using a CC. Serial TTE data showed significant alterations in the majority of the noninvasive functional and structural parameters (classic and novel) studied in the presence of MI. Both MPI and LVFS/MPI significantly (P < 0.05 for all reported values) correlated with body weight (r = -0.58 and 0.76 for MPI and LVFS/MPI, respectively), preload recruitable stroke work (r = -0.61 and 0.63), LV end-diastolic pressure (LVEDP) (r = 0.82 and -0.80), end-diastolic volume (r = 0.61 and -0.58), and end-systolic volume (r = 0.46 and -0.48). Forward stepwise linear regression analysis revealed that, of all variables tested, LVEDP was the only independent determinant of MPI (r = 0.84) and LVFS/MPI (r = 0.83). We conclude that MPI and LVFS/MPI correlate strongly and better than the classic noninvasive TTE parameters with established, invasively assessed indexes of contractility, preload, and volumetry. These findings support the use of these two new noninvasive indexes for long-term analysis of the post-MI LV remodeling.     

Milk yield, residual milk, oxytocin and cortisol release during machine milking in Gir, Gir x Holstein and Holstein cows

This study evaluated the effect of exclusive machine milking on oxytocin (OT) and cortisol (CORT) release, and on milk yield and residual milk in Gir (group Gir), Holstein (group Hol) and crossbred animals (group GirHol). Six animals from each group were submitted to experimental milkings. As expected, milk yield was significantly higher in the Hol group than in the groups GirHol and Gir, and group GirHol produced more milk than the Gir group. In contrast, all groups exhibited significant but similar levels of OT, although OT increased more rapidly during milking for the groups Hol and GirHol than for the Gir group. In addition, CORT levels measured during and after milking were significantly influenced by the group. The Gir group showed higher levels of CORT than the groups GirHol and Hol. The lower performances of the Gir breed can not be explained by a less efficient milk ejection reflex because all cows studied released enough OT and had an effective milk ejection.     

Infection dynamics of Marteilia refringens in flat oyster Ostrea edulis and copepod Paracartia grani in a claire pond of Marennes-Oléron Bay

The protozoan parasite Marteilia refringens has been partly responsible for the severe decrease in the production of the European flat oyster Ostrea edulis Linnaeus in France since the 1970s. The calanoid copepod Paracartia grani Sars was recently found to be a host for M. refringens in French shallow-water oyster ponds ('claires'). This study reconsidered M. refringens transmission dynamics in the light of this finding, taking into account not only oyster infection dynamics and environmental factors but also data concerning the copepod host. P. grani population dynamics in the claire under study revealed that this species is the dominant planktonic copepod in this confined ecosystem. During winter, M. refringens overwintered in O. edulis, with P. grani existing only as resting eggs in the sediment. The increase in temperature in spring controlled and synchronized both the release of M. refringens sporangia in the oyster feces, and the hatching of the benthic resting eggs of the copepod. Infection of oysters by M. refringens was limited to June, July and August, coinciding with (1) the highest temperature recorded in the claire, and (2) the highest abundance of P. grani. PCR detection of M. refringens in P. grani during the summer period was linked to the release of parasite sporangia by the oyster. Our results are supported by previous results on the effective transmission of this parasite from the oyster to the copepod.     

Measurement of ingestion rate of Hydrobia ulvae (Pennant) on intertidal epipelic microalgae: the effect of mud snail density

The individual mean ingestion rate of Hydrobia ulvae was measured experimentally in controlled microcosms, in the dark to avoid primary production during measurement and at constant temperature. The experimental design was based on the addition of prelabelled epipelic microalgae to microcosms in a constant proportion with unlabelled diatoms, and in such a way that algal food availability was not a limiting factor within the range of tested densities (0.3 to 4.1 snails cm(-2)). Results show that the individual mean ingestion rate decreased significantly from 26.6+/-1.1 ng Chl a snail(-1) h(-1) to 22.4+/-1.0 ng Chl a snail(-1) h(-1) between 0.7 and 3 snails cm(-2). We hypothesize that this sharp decrease (the threshold density was between 1.4 and 2.5 snails cm(-2)) may account for a density-dependent effect. We have tested this hypothesis by using a simple random walk model including basic behavioural processes such as a break in feeding activity when two individuals contact each other. The model represents quantitatively well the threshold effect, suggesting that behavioural processes have to be taken into account for estimating a global feeding activity of H. ulvae populations.