Two new gonad-infecting philometrids (Nematoda: Philometridae) from the yellowedge grouper Hyporthodus flavolimbatus (Serranidae) and the great northern tilefish Lopholatilus chamaeleonticeps (Malacanthidae) in the northern Gulf of Mexico

Based on light and scanning electron microscopical studies, two new gonad-infecting species of Philometra Costa, 1845 (Nematoda: Philometridae) are described from marine perciform fishes in the northern Gulf of Mexico: P. hyporthodi n. sp. from the ovary of the yellowedge grouper Hyporthodus flavolimbatus (Poey) (Serranidae) and P. lopholatili n. sp. from the ovary of the great northern tilefish Lopholatilus chamaeleonticeps Goode & Bean (Malacanthidae). Philometra hyporthodi is mainly characterised by the body length of both the males (3.62–4.07 mm) and gravid female (105 mm), the length of the spicules (135–138 μm) and the presence of dorsal transverse lamella-like structures on the distal portion of the gubernaculum. Philometra lopholatili is distinguished by the presence of a distinct dorsal protuberance consisting of two dorsolateral lamellated parts separated from each other by a smooth median field, an uninterrupted mound on the male caudal extremity, the length of the spicules (165–189 μm) and the body length of the males (2.19–2.34 mm) and gravid female (280 mm). Philometra lopholatili is the first representative of the genus and the second philometrid species reported from fishes of the family Malacanthidae.     

66 Architectural role of HMO1 in bending,bridging, and compacting DNA

HMO1 proteins are abundant Saccharomyces cerevisiae (yeast) High Mobility Group Box (HMGB) protein (Kamau, Bauerla & Grove, 2004). HMGB proteins are nuclear proteins which are known to be architectural proteins (Travers, 2003). HMO1 possesses two HMGB box domains. It has been reported that double box HMGB proteins induce strong bends upon binding to DNA. It is also believed that they play an essential role in reorganizing chromatin and, therefore, are likely to be involved in gene activation. To characterize DNA binding we combine single molecule stretching experiments and AFM imaging of HMO1 proteins bound to DNA. By stretching DNA bound to HMO1, we determine the dissociation constant, measure protein induced average DNA bending angles, and determine the rate at which torsional constraint of the DNA is released by the protein. To further investigate the local nature of the binding, AFM images of HMO1-DNA complexes are imaged, and we probe the behavior of these complexes as a function of protein concentration. The results show that at lower concentrations, HMO1 preferentially binds to the ends of the double helix and links to the separate DNA strands. At higher concentrations HMO1 induces formation of a complex network that reorganizes DNA. Although HMG nuclear proteins are under intense investigation, little is known about HMO1. Our studies suggest that HMO1 proteins may facilitate interactions between multiple DNA molecules.     

Protist Biodiversity and Biogeography in Lakes From Four Brazilian River–Floodplain Systems

The biodiversity and biogeography of protists inhabiting many ecosystems have been intensely studied using different sequencing approaches, but tropical ecosystems are relatively under‐studied. Here, we sampled planktonic waters from 32 lakes associated with four different river–floodplains systems in Brazil, and sequenced the DNA using a metabarcoding approach with general eukaryotic primers. The lakes were dominated by the largely free‐living Discoba (mostly the Euglenida), Ciliophora, and Ochrophyta. There was low community similarity between lakes even within the same river–floodplain. The protists inhabiting these floodplain systems comprise part of the large and relatively undiscovered diversity in the tropics.     

Using the nucleotide substitution rate matrix to detect horizontal gene transfer

Background  

Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conferring antibiotic resistance, improved detection of horizontally transferred genes from sequence data would be an important advance. Existing sequence-based methods for detecting HGT focus on changes in nucleotide composition or on differences between gene and genome phylogenies; these methods have high error rates.     

The struggle for safety: effectiveness of caterpillar defenses against bird predation

The effectiveness of anti‐predator traits, such as warning signals and camouflage, has rarely been quantified from a phylogenetic community ecology perspective. Here we use a phylogenetic comparative analysis to test the association between several putative anti‐predator traits and bird predation risk in an assemblage of caterpillar species. We synthesize eight years of field and laboratory study of a temperate forest community, including a four‐year bird exclusion experiment that provided comparative measures of bird predation risk for 38 caterpillar species from a phylogenetic community. We then conducted a phylogenetic generalized least‐squares and information‐theoretic model selection analysis of warning signals (aposematism or mimicry), camouflage (crypsis or masquerade), and behavioral responses to physical attack as predictors of bird predation, while also accounting for putatively important effects of the abundance, mean body size, and phenology of caterpillar species. The most behaviorally specialized caterpillar species possessing warning signals experienced the lowest bird predation risk, supporting aposematism theory and highlighting the role of prey behavior in the visual signaling of predators. Among the camouflaged caterpillar species, those with the greatest latency to detection by human proxy predators experienced the lowest bird predation risk, supporting camouflage theory. Caterpillar behavioral responses to physical attack, however, predicted increased bird predation risk among camouflaged caterpillars. Although caterpillar abundance, body size, and phenology were expected to be important based on inference from optimal foraging theory and previous field observations, these factors had limited predictive power. This study provides methodologically unique evidence for the importance of morphological and behavioral components of primary, visual defenses of caterpillars against their avian predators in a natural community.     

Extreme weather conditions correspond with localised vegetation death at Cradle Mountain,Tasmania

A chance observation of a drought‐related plant mortality event in early 2014 in a normally wet and cool alpine area was matched with local weather data providing a unique insight into this event. The observed plant death was largely indiscriminate in areas that were topographically predisposed to being susceptible to drought. The weather conditions surrounding this event included 5 weeks with very little rain, an extreme heatwave and subsequent brief periods where warm temperatures and dry air combined to produce highly evaporative conditions. Extreme weather conditions such as this are expected to occur with increasing frequency as a result of climate change. Observing and reporting on real‐world examples of how extreme weather events affect native vegetation is integral to improved climate change risk assessment and to inform future management actions.     

<Emphasis Type="Italic">Empruthotrema longipenis</Emphasis> n. sp. (Monogenoidea: Monocotylidae: Merizocotylinae) from the olfactory sacs of the smooth butterfly ray <Emphasis Type="Italic">Gymnura micrura</Emphasis> (Bloch &amp; Schneider) (Myliobatiformes: Gymnuridae) in the Gulf of Mexico

A new species of Empruthotrema Johnston & Tiegs, 1922 is described based on specimens collected from the olfactory sacs of smooth butterfly rays Gymnura micrura (Bloch & Schneider) captured in Mobile Bay (northcentral Gulf of Mexico), Alabama, USA. Empruthotrema longipenis n. sp. is most similar to the type-species Empruthotrema raiae (MacCallum, 1916) Johnston & Tiegs, 1922 by having 12 marginal and two interhamular loculi with members of haptoral hook pair 1 located midway along the periphery of each interhamular loculus and those of hook pair 2 located at the marginal termini of the bilateral septa flanking the interhamular loculi. Empruthotrema longipenis n. sp. differs from E. raiae by having a much longer male copulatory organ and from its remaining congeners by the sinistral and extracecal ejaculatory bulb flanking the pharynx, the number of interhamular and marginal septa, and the distribution of hook pairs 1 and 2 along the haptoral margin. This is the first report of a monocotylid from the smooth butterfly ray and from Mobile Bay. The diversity of haptoral morphotypes among the currently accepted species of Empruthotrema is detailed and discussed in the context of monophyly of the genus.