Evaluation of the sample size used for the rapid bioassessment of rivers using macroinvertebrates

Experiments were designed to investigate selective predation by medium (40–55 mm carapace width: CW) and large (55–70 mm CW) Carcinus maenas when feeding on four bivalves of contrasting shell morphology. Size-selection was examined by presenting individual crabs with a wide size range of Mytilus edulis, Ostrea edulis, Crassostrea gigas and Cerastoderma edule. Medium-sized crabs preferred mussels 5–15 mm shell length (maximum shell dimension: SL) and cockles 5–10 mm SL, whereas large crabs preferred mussels 15–25 mm and cockles 10–20 mm SL. Crabs generally showed no preference for any particular size of either oyster species. Species-selection was examined by presenting individual crabs with paired combinations of the four bivalves in various proportions. When offered mussels and oysters simultaneously, both size categories of crabs consistently selected mussels, and food choice was independent of prey relative abundance. By contrast, C. maenas selected mussels and cockles as expected by the frequency in which each size category of crab encountered the preferred size ranges of prey. Crab preference clearly paralleled the rank order of prey profitability, which in turn was mainly determined by prey biomass, suggesting that active selection takes place at some point of the predation cycle. Experiments with epoxy resin models showed that initial reluctance of crabs to attack oysters was not associated with the ultimate energy reward. Moreover, they suggest that foraging decisions are partly based on evaluations of overall prey shape and volume, and that the minimum dimension of the shell constitutes an important feature which crabs recognise and associate with prey value.     

Rapid assessment of rivers using macroinvertebrates: the role of experience, and comparisons with quantitative methods

We assessed rapid biological assessment (RBA) of macroinvertebrate communities in comparison with quantitative sampling at 18 pairs of river sites in south-eastern Australia. One member of each pair served as a reference site and the other was affected by mild to moderate human disturbance from a point or diffuse source (fish farm effluents, small municipal sewage discharges, a dam, agriculture and grazing). Samples were taken from riffles, stream edges and rocks in pools, mostly using hand nets (RBA) and Hess samplers (quantitative). Macroinvertebrates in RBA samples were always subsampled by live-picking by eye on site for 30 min. Comparisons were made between novice operators (university undergraduates) and experienced river biologists in the application of RBA, including sample identification. Quantitative samples were collected only by experienced river biologists, preserved and picked under stereomicroscopes in the laboratory, either in their entirety or after mechanical subsampling. Specimens were identified to family level for both methods. Novices recorded slightly fewer families than experts and misidentified some specimens, and expert data for the same site and habitat were on average more consistent than novice data. Nevertheless, Procrustes analysis of ordinations showed that differences between RBA and quantitative data did not depend on the type of RBA operator. And regardless of the operator, RBA data were better than quantitative data at discriminating between reference and disturbed sites for all three habitat types. We conclude that this type of RBA is sensitive and cost-effective, and we recommend improvements to inter-operator consistency.     

Detecting invertebrate species in archived collections using next‐generation sequencing

Invertebrate biodiversity measured at mostly family level is widely used in biological monitoring programmes to assess anthropogenic impacts on ecosystems. However, next‐generation sequencing (NGS) could allow development of new more sensitive biomonitoring tools by allowing rapid species identification. This could be accelerated if archived invertebrate collections and environmental information from past programmes are used to understand species distributions and their environmental responses. In this study, we take archived macroinvertebrate samples from two sites collected on multiple occasions and test whether NGS can successfully detect species. Samples had been stored in 70% ethanol at room temperature for up to 12 years. Three amplicons ranging from 197 to 274 bps within the DNA barcode region were amplified from samples and compared to DNA barcoding libraries to identify species. We were able to amplify partial DNA barcodes from most samples, and species were often detected with multiple amplicons. However, some singletons and taxa poorly covered by DNA barcoding were missed. This suggests additional DNA barcodes will be required to fill ‘gaps’ in current DNA barcode libraries for aquatic macroinvertebrates and/or that it may not be possible to detect all taxa in a sample. Furthermore, older samples often detected fewer taxa and were less reliable for amplification, suggesting NGS is best used on samples within 8 years of collection. Nevertheless, many common taxa with existing DNA barcodes were reliably identified with NGS and were often present at sites across multiple years, showing the potential of NGS for detecting common and abundant species in archived material.     

Biological Objectives for the Protection of Rivers and Streams in Victoria, Australia

This paper presents the approach and methods used, and the outputs generated, in the derivation of numeric biological objectives for the protection of rivers and streams across Victoria, Australia. Biological objectives have been designed for inclusion in State government legislation for the protection of the State’s waterways. The objectives were developed using data from extensive macroinvertebrate sampling of multiple reference sites across the State. Regional variations are incorporated into the objective-setting process by using an a priori, macroinvertebrate-based regionalisation of the State. The objectives consist of four separate components, including a measure of diversity, two biotic indices and a measure of community composition. The objectives are designed for use across broad regions and any attempt to extend the system to subregional levels would require a careful consideration of the influence of scale upon the grouping of reference sites.     

Can the Detection of Salinity and Habitat Simplification Gradients using Rapid Bioassessment of Benthic Invertebrates be Improved through Finer Taxonomic Resolution or Alternative Indices?

Benthic macroinvertebrates are commonly used in rapid bioassessment programs of rivers and streams with a few standard measures used to assess condition. These include AUSRIVAS predictive models, indices such as SIGNAL and EPT and a simple measure of taxa richness, number of families. Data in these programs are usually identified to family level. Until recently, there has been no assessment of the performance of these standard measures to specific environmental gradients. In addition, the level of identification remains contentious, with family level considered adequate in broadscale assessments whereas finer levels of resolution may be preferable in other situations. We tested whether finer levels of taxonomic resolution (of all taxa and just EPTs) improved detection of two environmental gradients – salinity and habitat simplification (through increased sandiness) – and also whether alternative indices enhanced detection of these gradients. Multivariate techniques demonstrated that different invertebrate communities were readily apparent for the salinity gradient (measured as electrical conductivity at the time of sampling) but less so for the habitat simplification gradient (measured as %sand in the riffle). By contrast, the standard measures (listed above) had low r ² values with EC (<0.34) for the salinity dataset but higher r ² values with %sand (up to 0.72) in the habitat simplification dataset. Species level data and species EPT data did not account for much more variation in the data than their family level equivalents. Reformulating the EPT data from numbers of taxa to % of the community improved these relationships in some cases. Alternative indices based on Crustacea and Mollusca showed strong relationships to the salinity gradient but not to habitat simplification. These findings are discussed regarding the application of the RBA data to specific disturbances and the need to develop more diagnostic indices.     

A comparison of diatom and macroinvertebrate classification of sites in the Kiewa River system, Australia

Diatoms and macroinvertebrates are both commonly used for biological assessment of stream condition. As the use of biological assessment techniques increases, resource managers will need to make decisions on which biological tool to use for a particular study. In a study of the Kiewa River, Victoria, Australia we assessed these two components of the biota—macroinvertebrates and diatoms—using indices and pattern analysis, and comparing them with an a priori landscape classification. We also assessed the relationship exhibited between the biological results and environmental variables which are usually significant in stream ecosystems. To make the data comparable we used categorical abundances for both data sets. The pattern analyses showed complementary results, with diatoms more closely related to water quality variables, whereas macroinvertebrates were primarily related to catchment and habitat features. An analysis of a combined data set (diatoms plus macroinvertebrates) showed no extra information was gained. Using categorisation to create consistency between data sets was shown to reduce the information and affect results from the diatom analyses. The results suggested that the locally derived bioassessment models and indices provided a more accurate assessment of the sites than the overseas-derived diatom index. The outcomes are complicated by issues of data weighting, whereby a presence/absence diatom index may have performed better than abundance-weighted indices due to strong dominance of one or two species at a site. Future comparisons will benefit from an increase in the knowledge of regional diatom taxonomy and autecology.     

The influences of climatic variation and vegetation on stream biota: lessons from the Big Dry in southeastern Australia

Aquatic biodiversity faces increasing threats from climate change, escalating exploitation of water and land use intensification. Loss of vegetation in catchments (= watersheds) has been identified as a substantial problem for many river basins, and there is an urgent need to better understand how climate change may interact with changes in catchment vegetation to influence the ecological condition of freshwater ecosystems. We used 20 years of biological monitoring data from Victoria, southeastern Australia, to explore the influences of catchment vegetation and climate on stream macroinvertebrate assemblages. Southeastern Australia experienced a severe drought from 1997 to 2009, with reductions of stream flows >50% in some areas. The prolonged drying substantially altered macroinvertebrate assemblages, with reduced prevalence of many flow‐dependent taxa and increased prevalence of taxa that are tolerant of low‐flow conditions and poor water quality. Stream condition, as assessed by several commonly used macroinvertebrate indices, was consistently better in reaches with extensive native tree cover in upstream catchments. Prolonged drought apparently caused similar absolute declines in macroinvertebrate condition indices regardless of vegetation cover, but streams with intact catchment and riparian vegetation started in better condition and remained so throughout the drought. The largest positive effects of catchment tree cover on both water quality and macroinvertebrate assemblages occurred above a threshold of ca. 60% areal tree cover in upstream catchments and in higher rainfall areas. Riparian tree cover also had positive effects on macroinvertebrate assemblages, especially in warmer catchments. Our results suggest that the benefits of extensive tree cover via improved water quality and in‐channel habitat persist during drought and show the potential for vegetation management to reduce negative impacts of climatic extremes for aquatic ecosystems.