Substitution by Inosine at the 3��-Ultimate and Penultimate Positions of 16S rRNA Gene Universal Primers

Universal 16S rRNA gene primers (8F and 518R) bearing inosine substitutions at either the 3??-ultimate or the 3??-ultimate and penultimate base positions were exploited for the first time to study the bacterial community associated with coral polymicrobial Black Band Disease (BBD). Inosine-modified universal primer pairs display some shifting in the composition of 16S rRNA gene libraries, as well as expanding the observed diversity of a BBD bacterial community at the family/class level. Possible explanations for the observed shifts are discussed. These results thus point to the need for adopting multiple approaches in designing 16S rRNA universal primers for PCR amplification and subsequent construction of 16S rRNA gene libraries or pyrosequencing in the exploration of complex microbial communities.     

Electroretinographic study of the magnetic compass in European robins

Migratory birds are known to be sensitive to external magnetic field (MF). Much indirect evidence suggests that the avian magnetic compass is localized in the retina. Previously, we showed that changes in the MF direction could modulate retinal responses in pigeons. In the present study, we performed similar experiments using the traditional model animal to study the magnetic compass, European robins. The photoresponses of isolated retina were recorded using ex vivo electroretinography (ERG). Blue- and red-light stimuli were applied under an MF with the natural intensity and two MF directions, when the angle between the plane of the retina and the field lines was 0° and 90°, respectively. The results were separately analysed for four quadrants of the retina. A comparison of the amplitudes of the a- and b-waves of the ERG responses to blue stimuli under the two MF directions revealed a small but significant difference in a- but not b-waves, and in only one (nasal) quadrant of the retina. The amplitudes of both the a- and b-waves of the ERG responses to red stimuli did not show significant effects of the MF direction. Thus, changes in the external MF modulate the European robin retinal responses to blue flashes, but not to red flashes. This result is in a good agreement with behavioural data showing the successful orientation of birds in an MF under blue, but not under red illumination.     

Architecture of the cystic fibrosis transmembrane conductance regulator protein and structural changes associated with phosphorylation and nucleotide binding

We describe biochemical and structural studies of the isolated cystic fibrosis transmembrane conductance regulator (CFTR) protein. Using electron cryomicroscopy, low resolution three-dimensional structures have been obtained for the non-phosphorylated protein in the absence of nucleotide and for the phosphorylated protein with ATP. In the latter state, the cytosolic nucleotide-binding domains move closer together, forming a more compact packing arrangement. Associated with this is a reorganization within the cylindrical transmembrane domains, consistent with a shift from an inward-facing to outward-facing configuration. A region of density in the non-phosphorylated protein that extends from the bottom of the cytosolic regions up to the transmembrane domains is hypothesised to represent the unique regulatory region of CFTR. These data offer insights into the architecture of this ATP-binding cassette protein, and shed light on the global motions associated with nucleotide binding and priming of the chloride channel via phosphorylation of the regulatory region.     

Bacterial Consortium of Millepora dichotoma Exhibiting Unusual Multifocal Lesion Event in the Gulf of Eilat, Red Sea

Colonies of the hydrocoral Millepora dichotoma along the Gulf of Eilat are exhibiting unusual tissue lesions in the form of white spots. The emergence and rapid establishment of these multifocal tissue lesions was the first of its kind reported in this region. A characterization of this morphological anomaly revealed bleached tissues with a significant presence of bacteria in the tissue lesion area. To ascertain possible differences in microbial biota between the lesion area and non-affected tissues, we characterized the bacterial diversity in the two areas of these hydrocorals. Both culture-independent (molecular) and culture-dependent assays showed a shift in bacterial community structure between the healthy and affected tissues. Several 16S rRNA gene sequences retrieved from the affected tissues matched sequences of bacterial clones belonging to Alphaproteobacteria and Bacteroidetes members previously associated with various diseases in scleractinian corals.     

Fatty acid synthesis inTrichophyton rubrum

Analysis of the fatty acid content ofT. rubrum showed that the organism is capable of synthesizing a variety of saturated and unsaturated long-chain fatty acids (Kostiw, Vicher &Lyon, 1966). The present study was undertaken to determine the mechanism of synthesis of these fatty acids. Experimental data point to the presence of two mechanisms of fatty acid synthesis inT. rubrum:de novo synthesis and chain elongation. The presence of both mechanisms is suggested by the nature of the enzyme preparation, by the cofactor requirements for either pathway, and by the reaction products.University of Illinois at the Medical Center, and Chicago Medical School, Chicago, Illinois. Presented in part at the International Society of Mycology Meeting, New Orleans, Louisiana, August 1967.     

Cretaceous and Paleogene boundary strata in southern Tibet and their implication for the India-Eurasia collision

Recent stratigraphic studies in southern Tibet provide new information about the timing of the initial collision between the India and Eurasia continental blocks. The stratigraphic and paleontological evidence document dramatic changes in sedimentary facies and microfauna content across the Cretaceous-Paleogene (K/Pg) boundary. In the Zhongba and Gamba areas in southern Tibet, the K/Pg boundary is marked by a major disconformity, separating platform carbonates from overlying terrigenous conglomerates and sandstones. The stratigraphy of the boundary sequences has recently been improved with the recognition of three foraminiferal assemblages. They are: Maastrichtian Orbitoides-Omphalocyclus , Danian Rotalia-Smoutina-Lockhartia and Thanetian Miscellanea-Daviesina microfaunal assemblages. The K/Pg boundary at the Gamba area is placed between the Orbitoides-Omphalocyclus and Rotalia-Smoutina-Lockhartia faunas. In Tingri, Cretaceous Globotruncana and tertiary Globigerina-Globorotalia microfauna demark the position of the K/Pg boundary. The occurrence of terrigenous sandstones and boulder-size conglomerates in the early Paleocene is compelling evidence for tectonic uplift and emergence of the southern margin of the Lhasa block and of the northern margin of the Indian plate. Therefore, supported by biostratigraphic evidence, we argue that the uplift is caused by the onset of continental collision during the earliest Danian. Progressing plate collision resulted in deformation and fragmentation of the Paleocene carbonate platform and deposition of limestone breccias, which we consider as further evidence for tectonic compression as a result of early continental collision during the Thanetian, earlier than indicated by previous studies in the Himalayas. It is the change in the sedimentary facies and depositional environment that provides the earliest evidence and dating of the initiation of the collision process. From studies of sedimentary strata in southern Tibet, the collision of the India and Lhasa continental blocks was initiated at ~K/Pg boundary time (~65Ma). If that is the case, than the major lithofacies changes at the K/Pg boundary observed in the western Tethys, mostly referred to as intrinsic to the eustatic sea level change, has been driven by continental convergence and collision of the Indian and Eurasian plates.     

Functionally distinct PI 3-kinase pathways regulate myelination in the peripheral nervous system

The PI 3-kinase (PI 3-K) signaling pathway is essential for Schwann cell myelination. Here we have characterized PI 3-K effectors activated during myelination by probing myelinating cultures and developing nerves with an antibody that recognizes phosphorylated substrates for this pathway. We identified a discrete number of phospho-proteins including the S6 ribosomal protein (S6rp), which is down-regulated at the onset of myelination, and N-myc downstream-regulated gene-1 (NDRG1), which is up-regulated strikingly with myelination. We show that type III Neuregulin1 on the axon is the primary activator of S6rp, an effector of mTORC1. In contrast, laminin-2 in the extracellular matrix (ECM), signaling through the α6β4 integrin and Sgk1 (serum and glucocorticoid-induced kinase 1), drives phosphorylation of NDRG1 in the Cajal bands of the abaxonal compartment. Unexpectedly, mice deficient in α6β4 integrin signaling or Sgk1 exhibit hypermyelination during development. These results identify functionally and spatially distinct PI 3-K pathways: an early, pro-myelinating pathway driven by axonal Neuregulin1 and a later-acting, laminin–integrin-dependent pathway that negatively regulates myelination.