Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae)

Polymerase chain reaction (PCR) products corresponding to 803 bp of the cytochrome oxidase subunits I and II region of mitochondrial DNA (mtDNA COI-II) were deduced to consist of multiple haplotypes in three Sitobion species. We investigated the molecular basis of these observations. PCR products were cloned, and six clones from one individual per species were sequenced. In each individual, one sequence was found commonly, but also two or three divergent sequences were seen. The divergent sequences were shown to be nonmitochondrial by sequencing from purified mtDNA and Southern blotting experiments. All seven nonmitochondrial clones sequenced to completion were unique. Nonmitochondrial sequences have a high proportion of unique sites, and very few characters are shared between nonmitochondrial clones to the exclusion of mtDNA. From these data, we infer that fragments of mtDNA have been transposed separately (probably into aphid chromosomes), at a frequency only known to be equalled in humans. The transposition phenomenon appears to occur infrequently or not at all in closely related genera and other aphids investigated. Patterns of nucleotide substitution in mtDNA inferred over a parsimony tree are very different from those in transposed sequences. Compared with mtDNA, nonmitochondrial sequences have less codon position bias, more even exchanges between A, G, C and T, and a higher proportion of nonsynonymous replacements. Although these data are consistent with the transposed sequences being under less constraint than mtDNA, changes in the nonmitochondrial sequences are not random: there remains significant position bias, and probable excesses of synonymous replacements and of conservative inferred amino acid replacements. We conclude that a proportion of the inferred change in the nonmitochondrial sequences occurred before transposition. We believe that Sitobion aphids (and other species exhibiting mtDNA transposition) may be important for studying the molecular evolution of mtDNA and pseudogenes. However, our data highlight the need to establish the true evolutionary relationships between sequences in comparative investigations.      

Using wavelet analysis to examine bark microrelief

Key Message

An improved quantification of variations in bark microrelief is presented that uses wavelets on a circular domain from data acquired using the LaserBark? automated tree measurement system.

Abstract

An important metric of canopy structure, bark microrelief affects both the hydrology and biogeochemistry of forests. Increased bark microrelief leads to reduced stemflow volumes and higher concentrations of stemflow leachates and nutrient-ions. Consequently, an improved representation of bark microrelief would be useful to describe the influence of various tree species on water and solute contributions to the forest floor. Most existing methods to quantify bark microrelief are ‘global’ measures; that is, they provide a single number that represents the overall bark microrelief of the entire perimeter of the tree. To remedy this, wavelet analysis of LaserBark? automated tree measurement system data is proposed and described to quantify variations in bark microrelief around the perimeter of the tree. This measure describes the spatial differences in bark microrelief and allows representation of trees that exhibit directional variability in bark microrelief due to natural or anthropogenic effects. The results show that wavelet analysis is effective in quantifying both bark microrelief and large-scale tree asymmetry. The radial component highlights changes in the depth of bark microrelief while the tangential component relates to the distance between bark furrows in the bark cross section. Thus, wavelet analysis may be a useful tool for comparing bark structure that varies, for example, within- and between-tree species, at different stages of tree growth, and among trees grown under different environmental conditions.     

Phragmites australis root secreted phytotoxin undergoes photo-degradation to execute severe phytotoxicity

Our study organism, Phragmites australis (common reed), is a unique invader in that both native and introduced lineages are found coexisting in North America. This allows one to make direct assessments of physiological differences between these different subspecies and examine how this relates to invasiveness. Recent efforts to understand plant invasive behavior show that some invasive plants secrete a phytotoxin to ward-off encroachment by neighboring plants (allelopathy) and thus provide the invaders with a competitive edge in a given habitat. Here we show that a varying climatic factor like ultraviolet (UV) light leads to photo-degradation of secreted phytotoxin (gallic acid) in P. australis rhizosphere inducing higher mortality of susceptible seedlings. The photo-degraded product of gallic acid (hereafter GA), identified as mesoxalic acid (hereafter MOA), triggered a similar cell death cascade in susceptible seedlings as observed previously with GA. Further, we detected the biological concentrations of MOA in the natural stands of exotic and native P. australis. Our studies also show that the UV degradation of GA is facilitated at an alkaline pH, suggesting that the natural habitat of P. australis may facilitate the photo-degradation of GA. The study highlights the persistence of the photo-degraded phytotoxin in the P. australis''s rhizosphere and its inhibitory effects against the native plants.Key words: ultraviolet, gallic acid, mesoxalic acid, novel weapons, invasive species, Phragmites australis     

Individual and time-varying tree-ring growth to climate sensitivity of Pinus tabuliformis Carr. and Sabina przewalskii Kom. in the eastern Qilian Mountains, China

Individual tree-ring width chronologies and mean chronologies from Pinus tabuliformis Carr. (Chinese pine) and Sabina przewalskii Kom. (Qilian juniper) tree cores were collected and analyzed from two sites in the eastern Qilian Mountains of China. The chronologies were used to analyze individual and time-varying tree-ring growth to climate sensitivity with monthly mean air temperature and total precipitation data for the period 1958–2008. Climate–growth relationships were assessed with correlation functions and their stationarity and consistency over time were measured using moving correlation analysis. Individuals’ growth–climate correlations suggested increased percentages of individuals are correlated with certain variables (e.g., current June temperature at the P. tabuliformis site; previous June, December and current May temperature and May precipitation at the S. przewalskii site). These same climatic variables also correspond to the mean chronology correlations. A decreased percentage of individuals correlated with these climatic variables indicates a reduced sensitivity of the mean chronology. Moving correlation analysis indicated a significant change over time in the sensitivity of trees to climatic variability. Our results suggested: (1) that individual tree analysis might be a worthwhile tool to improve the quality and reliability of the climate signal from tree-ring series for dendroclimatology research; and (2) time-dependent fluctuations of climate growth relationships should be taken into account when assessing the quality and reliability of reconstructed climate signals.     

A simple method for studying whole sections of rice grain

We developed a new and simple method to collect sections of a whole brown rice kernel for investigation of histological properties. A single kernel of rice was dehydrated through a graded ethanol series, transferred to xylene, and embedded in paraffin. During sectioning of the blocks using a rotary microtome, we used a special adhesive tape to collect and place the sections on slides so they remained flat. The use of the adhesive tape technique combined with autofluorescence characteristics allowed us to visualize cell walls throughout an entire longitudinal or transverse section of a whole rice kernel. We obtained scanning electron microscopy images of the sections to determine section quality.     

Initial verification of the resistance management strategy for Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae) in Australia

Shortly after the initial detection of western flower thrips (WFT), Frankiniella occidentalis (Pergande), in Australia during 1993 a resistance management strategy based on the alternation of chemical groups was implemented. This study aimed to verify this strategy by field testing α-cypermethrin against WFT with and without chemical alternation. Up to 114 times α-cypermethrin resistance (at LC50) was detected and resistance increased with and without chemical alternation; however, chemical alternation did significantly reduce numbers of thrips compared with a nonalternation strategy. Resistance has the potential to undermine the sustainable use of those chemicals to which there is no current detectable resistance. Consequently, chemicals with a high frequency and level of resistance against WFT need to be identified through monitoring and quickly eliminated from WFT chemical control recommendations.     

Evaporation of intercepted precipitation from fruit litter of Liquidambar styraciflua L. (sweetgum) in a clearing as a function of meteorological conditions

Interception of precipitation by fruit litter is a poorly understood component of the hydrologic cycle in forested ecosystems. Even less well understood is the effect of meteorological conditions on the evaporation of precipitation intercepted by forest litter. This study sought to examine the influence of meteorological conditions on the evaporation of intercepted precipitation by fruit litter from Liquidambar styraciflua L. (sweetgum) by deriving and calibrating a regression model to estimate evaporation from the fruit litter that may be of potential use to forest and watershed managers. Data on evaporative losses from the fruit litter used to derive and calibrate the statistical model were acquired through a larger field experiment conducted from mid November 2002 through April 2003. Results from the forward stepwise least squares multiple regression model demonstrated that evaporative losses from the fruit litter were estimated with a high degree of accuracy based on the amount of water stored, solar radiation inputs, and vapor pressure deficit (adjusted R²=0.836, F=82.28, P<0.00001). The amount of water stored in the fruit litter explained the highest proportion of variance in the regression model. Storm to storm comparisons also highlighted the importance of solar radiation and wind speed in determining evaporation from the fruit litter. The regression model potentially may be used in conjunction with a canopy interception model to predict interception losses from L. styraciflua dominated forests and plantations.