On blocking rules for the bootstrap with dependent data

We address the issue of optimal block choice in applicationsof the block bootstrap to dependent data. It is shown that optimalblock size depends significantly on context, being equal ton^1/3, n^1/4 and n^1/5 in the cases of variance or bias estimation,estimation of a onesided distribution function, and estimationof a two-sided distribution function, respectively. A clearintuitive explanation of this phenomenon is given, togetherwith outlines of theoretical arguments in specific cases. Itis shown that these orders of magnitude of block sizes can beused to produce a simple, practical rule for selecting blocksize empirically. That technique is explored numerically.     

In Vitro Culture of Orobanche aegyptiaca

Calli derived from seedlings of the parasitic plant Orobancheaegyptiaca were grown on enriched nutrient agar. Growth wasenhanced by the addition of 0.1 mg 1^–1 NAA and 5 % coconutmilk. The calli developed two kinds of elongated protrusions:thin ones which resemble the young root radicle and thick oneswhich resemble the adventitious roots of Orobanche plants. Bothformed pad-like structures when touching the substrate. In liquidculture, some of the calli were observed to surround isolatedcultured tomato roots. Orobanche aegyptiaca Pers., in vitro culture, germination, coconut milk, root parasite     

Physiological Color Changes in Reptiles

SYNOPSIS. The physiological regulation of color changes in reptilesas studied in the lizard, Anolis carolinensis, is discussed.In Anolis, the ability to adapt to a background is dependentupon the level of circulating MSH, therelease of which is dependenton information received through the eyes. Blinded (or intact)lizards are brown under conditions of strong illumination andgreen under conditions of lower light intensities, and, again,these color changes are regulated by MSH. According to Kleinholz,color changes in the blinded lizard are regulated by dermalphotoreceptors. High or low temperatures directly affect thecolor of Anolis skins and alter the rate at which skins respondto hormones. Aggregationof melanin granules within Anolis melanophoresin response to sympathomimetic stimulation is regulated throughalpha adrenergic receptors whereas dispersion of melanin granulesin response to such stimulation is controlled through beta adrenergicreceptorspossessed by the melanophores. Most Anolis melanophores possessboth alpha and beta adrenergic receptors, but some melanophorespossess only beta adrenergic receptors. In the normal physiologyof the lizard, under conditions of stress, stimulation of alphaadrenergic receptors by catecholamines leads to an "excitement—pallor"followedby an "excitement—darkening" resulting from stimulationof beta adrenergic receptors which causes dispersion of melaningranules within localized populations of melanophores. Thus,in Anolis, dispersion of melanin granules within melanophoresis regulated by both MSH and by catecholamines. Evidence ispresented that the intracellular level of cyclic 3', 5'-AMPwithin melanophores may be responsible for the regulation ofmovement of melanin granules.     

Species Diversity, Biogeography, and the Evolution of Biotas

SYNOPSIS. A central scientific problem for ecologists and systematistshas been to explain spatiotemporal patterns of species diversity.One aspect of this question is how to understand the taxonomicassembly of biotas and their included ecosystems and communities.Four processes add or subtract species from a region: speciation,extinction, biotic dispersion, and long-distance dispersal.Speciation and biotic dispersion are postulated to result inhistorically structured (hierarchical) species assemblages,whereas long-distance dispersal results in assemblages thatwould be expected to be historically unstructured (nonhierarchical).Continental biotas, as exemplified by the Australian avifauna,are historically structured: they are segregated into areasof endemism having hierarchical relationships that presumablyarose as a result of their history being dominated by cyclesof biotic dispersion and vicariance. It is also proposed thatthese latter two processes are necessary, and in many casesprobably sufficient, to explain the taxonomic composition ofcommunities within these areas of endemism. Long-distance dispersalappears to play a much more minor role in the assembly of eithercontinental biotas or their communities than current ecologicaltheory would predict.     

Total metal burdens in the freshwater amphipod Gammarus fasciatus: contribution of various body parts and influence of gut contents

1. The distribution of trace metals among body parts of the freshwater amphipod Gammarus fasciatus was investigated and the effect of depuration on the total body burden was assessed.
2. Concentrations of Cr, Fe, Mn and Ni were one order of magnitude higher in the gut contents than in the various body parts, accounting for 40–72% of the total body burdens of amphipods. Depuration caused a decrease of total metal concentrations of 35–88%.
3. Levels of Cd and Cu were higher in the hepatopancreas than in other body parts, whereas levels of Zn were relatively constant throughout the body. For Cd, Cu and Zn, depuration had no effect on mean body concentrations.
4. For Pb, an important fraction of the total body burden was associated with the exoskeleton; depuration caused a decrease in Pb body concentrations.
5. Regression between amphipod metal concentrations before and after depuration is a potential tool for correcting for the effect of gut contents. This correcting method was found to be promising for Cd, Cu, Mn and Zn, with R ² varying between 0.66 and 0.98. It was less efficient for Cr, Fe and Pb, and was useless for Ni.     

A reappraisal of the Palaeopantopoda with description of a species from the Jurassic

The Devonian fossil Palaeoisopus appears, in the light of recent evidence from newly found specimens, to be much nearer extant pycnogonids than previously surmised. The fossil record of the Pycnogonida is extended to the Jurassic on the basis of a long overlooked Solenhofen example. Most of the specimens ascribed to the common Solenhofen Phalangites cannot be pycnogonids, but it is possible that we are dealing with a complex of superficially similar fossils. A revision of the classification of the fossil pycnogonids (Order Palaeopantopoda) is suggested in the light of this new material.     

Resin Ducts in the Mango Fruit: A Defence System

The fruit of the mango (Mangifera indica L.) is characterizedby resin ducts in its exocarp. There is a significant correlationbetween various characters of these resin ducts and the resistanceof the fruit to the Mediterranean fruit fly (Ceratitis capitataL.). The mean number of ducts which are crossed by a randomline in a transverse section of the exocarp is greater thanone in the resistant varieties and less than one in the sensitivevarieties. The hypothesis that the duct system renders protectionto the fruit is consistent with these observations.     

Is realised connectivity among populations of aquatic fauna predictable from potential connectivity?

1. Effective management of aquatic fauna requires knowledge of the ways in which populations in different catchments and sub‐catchments are connected. A powerful way to estimate this is using genetic markers, which provide information on the average amount of genetic connectivity among populations over generations. Although many studies of genetic connectivity have appeared in the literature, there are innumerable species that have not been studied. 2. This study explores whether it is possible to make broad generalisations about population connectivity, based on readily available information in the form of species life history and architecture of the aquatic habitat. 3. A number of models have been proposed to explain the pattern of connectivity shown by aquatic species with different life‐history characteristics, for example, the stream hierarchy model, Isolation by Distance, the Death Valley Model, the headwater model and panmixia. 4. In this study, we propose a dichotomous key to assign species to different models of potential connectivity. The key is based on a few very simple questions about the life history of the species and the geographical arrangement of study sites. We then assessed the performance of the key with 109 data sets of Australian fish and macroinvertebrates, using genetic data to provide an estimate of realised connectivity. 5. The realised connectivity fitted the proposed potential connectivity model in over 70% of cases, and we suggest this might be a useful initial approach for managers where empirical data are lacking.     

Relative roles of dispersal dynamics and competition in determining the isotopic niche breadth of a wetland fish

1. The niche variation hypothesis predicts that among‐individual variation in niche use will increase in the presence of intraspecific competition and decrease in the presence of interspecific competition. We sought to determine whether the local isotopic niche breadth of fish inhabiting a wetland was best explained by competition for resources and the niche variation hypothesis, by dispersal of individuals from locations with different prey resources or by a combination of the two. We analysed stable isotopes of carbon and nitrogen as indices of feeding niche and compared metrics of within‐site spread to characterise site‐level isotopic niche breadth. We then evaluated the explanatory power of competing models of the direct and indirect effects of several environmental variables spanning gradients of disturbance, competition strength and food availability on among‐individual variation of the eastern mosquitofish (Gambusia holbrooki). 2. The Dispersal model posits that only the direct effect of disturbance (i.e. changes in water level known to induce fish movement) influences among‐individual variation in isotopic niche. The Partitioning model allows for only direct effects of local food availability on among‐individual variation. The Combined model allows for both hypotheses by including the direct effects of disturbance and food availability. 3. A linear regression of the Combined model described more variance than models limited to the variables of either the Dispersal or Partitioning models. Of the independent variables considered, the food availability variable (per cent edible periphyton) explained the most variation in isotopic niche breadth, followed closely by the disturbance variable (days since last drying event). 4. Structural equation modelling provided further evidence that the Combined model was best supported by the data, with the Partitioning and the Dispersal models only modestly less informative. Again, the per cent edible periphyton was the variable with the largest direct effect on niche variability, with other food availability variables and the disturbance variable only slightly less important. Indirect effects of heterospecific and conspecific competitor densities were also important, through their effects on prey density. 5. Our results support the Combined hypotheses, although partitioning mechanisms appear to explain the most diet variation among individuals in the eastern mosquitofish. The results also support some predictions of the niche variation hypothesis, although both conspecific and interspecific competition appeared to increase isotopic niche breadth in contrast to predictions that interspecific competition would decrease it. We think this resulted from high diet overlap of co‐occurring species, most of which consume similar macroinvertebrates.     

X-chromosome inactivation and escape

X-chromosome inactivation, which was discovered by Mary Lyon in 1961 results in random silencing of one X chromosome in female mammals. This review is dedicated to Mary Lyon, who passed away last year. She predicted many of the features of X inactivation, for e.g., the existence of an X inactivation center, the role of L1 elements in spreading of silencing and the existence of genes that escape X inactivation. Starting from her published work here we summarize advances in the field.