Bovine liver dihydropyrimidine amidohydrolase: pH dependencies of inactivation by chelators and steady-state kinetic properties

Dihydropyrimidine amidohydrolase (EC 3.5.2.2) catalyzes the reversible hydrolysis of 5,6-dihydropyrimidines to the corresponding beta-ureido acids. Previous work has shown that incubation of this Zn2+ metalloenzyme with 2,6-dipicolinic acid, 8-hydroxyquinoline-5-sulfonic acid, or o-phenanthroline results in inactivation by Zn2+ removal by a reaction pathway involving formation of a ternary enzyme-Zn2+-chelator complex which subsequently dissociates to yield apoenzyme and the Zn2+-chelate (K. P. Brooks, E. A. Jones, B. D. Kim, and E. G. Sander, (1983) Arch. Biochem. Biophys. 226, 469-483). In the present work, the pH dependence of chelator inactivation is studied. The equilibrium constant for formation of the ternary complex is strongly pH dependent and increases with decreasing pH for all three chelators. There is a positive correlation between the value of the equilibrium constant observed for each chelator and the value of its stability constant for formation of Zn2+-chelate. The affinity of the chelators for the enzyme increases in the order 8-hydroxyquinoline-5-sulfonic acid greater than o-phenanthroline greater than 2,6-dipicolinic acid. The first-order rate constant for breakdown of the ternary complex to yield apoenzyme and Zn2+-chelate is invariant with pH for a given chelator but is different for each chelator, increasing in the reverse order. The pH dependence of the inactivation shows that two ionizable groups on the enzyme are involved in the inactivation. On the other hand, the steady-state kinetic behavior of the enzyme is well-described by ionization of a single group with a pK of 6.0 in the free enzyme. The basic form of the group is required for catalysis; protonation of the group decreases both Vmax and the apparent affinity for substrate. Conversely, binding of substrate decreases the pK of this group to about 5. L-Dihydroorotic acid is shown to be a competitive inhibitor of dihydropyrimidine amidohydrolase. Binding of L-dihydroorotic acid increases the pK of the ionizable group to 6.5. The agreement between the pK in the enzyme-L-dihydroorotic acid complex and the higher pK observed in the pH dependence of inactivation by chelators suggests that the same group is involved in the binding of acid, and chelators. The different effects of substrate and L-dihydroorotic acid on the pK suggest that the binding modes of these two ligands may be different and suggest a structural basis for the mutally exclusive substrate specificities of dihydropyrimidine amidohydrolase and dihydroorotase.     

Assessing the risk of invasive success in Pinus and Banksia in South African mountain fynbos

Abstract. South African mountain fynbos has been severely invaded by trees and shrubs introduced from other mediterranean-climate regions. Management of these invasions should involve controlling current invaders and screening future introductions. Invasion windows are described and functional groups are defined for pines based on life history attributes important for invasion in the fire-prone mountain fynbos. The most successful invasive pines here (Pinus halepensis, P. pinaster and P. radiata) are fire-resilient and have small seeds, low seed-wing loadings, short juvenile periods, moderate to high degrees of serotiny and relatively poor fire-tolerance as adults. Other species with these attributes, especially from mediterranean-climate regions, wouldbe high-risk introductions. Taxa in other functional groups have not become major weeds even with widespread man-aided dissemination. Experience with pine invaders was used to define functional groups in western Australian Banksia species (Proteaceae), shrubs and trees which include taxa with similar attributes to fynbos invaders (e.g. Hakea and Pinus spp.). Banksias have only recently been introduced to the Cape, and are likely to be increasingly cultivated for the cut flower market. Tall serotinous shrubs with many small seeds per plant, short juvenile periods and low fire tolerance were identified as high risk introductions. This group includes thicket-forming species which maintain very large viable seed banks, e.g. Banksia burdettii, B. hookeriana and B. leptophylla. Low sprouting shrubs with few large seeds per plant and long juvenile periods are unlikely to become invasive in mountain fynbos. The approach of defining functional groups based on life history attributes and invasion windows is valuable for predicting the probability of invasive success. Chance interactions suchas an opportunistic dispersal mutualism between Pinus pinea and an introduced squirrel sometimes confound these predictions and underscore the idiosyncracies inherent in biological invasions.     

The comparison of selected life-history characteristics of Mesembryanthema species occurring on and off Mima-like mounds (heuweltjies) in semi arid southern Africa

Selected life-history characteristics of Mesembryanthema species occurring on and off mima-like mounds (heuweltjies) were compared at Tierberg in the southern Succulent Karoo, South Africa. Seed production, the number of seeds retained in seed capsules and germination behaviour were measured in fourteen species of Mesembryanthema which were representatives of two sub-families: the Ruschioideae and the Mesembryanthemoideae. Species occurring onheuweltjies had low overall germination and high seed retention compared with those species occurring offheuweltjies. A strong negative correlation was found between the degree of seed retention and maximum germination. It was proposed that rapid germination and low seed dormancy in species occurring on the flats would be a viable strategy where competition for safe recruitment sites is strong. Species occurring on the flats are long-lived woody shrubs, thus the resulting high levels of seedling mortality probably do not have a major impact on population dynamics.Heuweltjies are sites of intense disturbance. Plant species that occur onheuweltjies can also occur offheuweltjies in disturbed vegetation. Opportunistic life-history characteristics allow these species to colonise disturbed areas.Heuweltjie species thus act as pioneers in a successional process which results ultimately in the re-colonisation of the long-lived flats species. Phylogenetic factors may also determine the species distributions. Members of the Mesembryanthemoideae did not occur offheuweltjies in undisturbed areas. Most Ruschioideae were found on the flats but the few species that occurred onheuweltjies shared similar characteristics with the Mesembryanthemoideae. The primitive life-history characteristics exhibited by the Mesembryanthemoideae enable them to exploit disturbed conditions.     

Coexistence of Banksia species in southwestern Australia: the role of regional and local processes

Abstract. 60 of the 75 Banksia species are confined to southwestern Australia where five or six species often coexist. We explored the role of regional species richness, niche differentiation, and habitat specialization in structuring banksia assemblages. The diversity of growth forms and categories of seed production and response to fire were assessed in actual assemblages at 40 sites throughout southwestern Australia. Diversity indices at each site were compared with those from null communities assembled on the basis of the abundance and sociability of taxa in regional species pools. The relationship between local and regional species richness suggests that processes at the scale of 100-m² quadrats limit local richness and therefore coexistence. However, there was no consistent evidence that taxa are differentiated by growth form or regeneration strategy. No particular biological profile makes a banksia adept at coexisting with a wide range of other taxa. Habitat specialization is an important factor contributing to lower local richness than would be predicted from niche differentiation of taxa in regional pools. There is recent empirical evidence of several mechanisms whereby the number of coexisting banksias is increased beyond the limits suggested by simple niche theories. Variability in the fire regime also provides a mechanism for maintaining local species richness because different fires favour recruitment of different taxa.     

Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex

Two regions of the genome, a 1-kbp portion of the zeste locus and a 1.1- kbp portion of the yolk protein 2 locus, were sequenced in six individuals from each of four species: Drosophila melanogaster, D. simulans, D. mauritiana, and D. sechellia. The species and strains were the same as those of a previous study of a 1.9-kbp region of the period locus. No evidence was found for recent balancing or directional selection or for the accumulation of selected differences between species. Yolk protein 2 has a high level of amino acid replacement variation and a low level of synonymous variation, while zeste has the opposite pattern. This contrast is consistent with information on gene function and patterns of codon bias. Polymorphism levels are consistent with a ranking of effective population sizes, from low to high, in the following order: D. sechellia, D. melanogaster, D.mauritiana, and D. simulans. The apparent species relationships are very similar to those suggested by the period locus study. In particular, D. simulans appears to be a large population that is still segregating variation that arose before the separation of D. mauritiana and D. sechellia. It is estimated that the separation of ancestral D. melanogaster from the other species occurred 2.5-3.4 Mya. The separations of D. sechellia and D. mauritiana from ancestral D. simulans appear to have occurred 0.58- 0.86 Mya, with D. mauritiana having diverged from ancestral D. simulans 0.1 Myr more recently than D. sechellia.      

Profiling a besieged flora: endemic and threatened plants of the Cape Peninsula, South Africa

The Cape Peninsula (area: 471 km²), situated at the south-western extremity of the Cape Floristic Region, has exceptionally high plant species richness (2285 species and infraspecific taxa) and numbers of endemic (90; 88 species and two infraspecific) and threatened (141; 138 species and three infraspecific) taxa (termed species from here on). This biodiversity is threatened by urban development and the spread of invasive alien plants. Peninsula endemics are concentrated in a few, predominantly species-rich families and these correspond well with endemic-rich families in other areas of the Cape Floristic Region. A high level of similarity exists between families with threatened and families with endemic species. A frequency analysis of the biological traits of both endemic and threatened species shows that low growing, ant-dispersed shrubs are over-represented in both groups. Endemics are most likely to be non-sprouters, but threatened plants do not have a specific post-fire regeneration strategy. Threatened species have higher frequencies of geophytes, sprouters and wind-dispersed species compared to endemic species. Numbers of endemic and threatened species are not randomly distributed with regard to occurrence in vegetation types and patterns are similar for both groups. The habitat and biological profiles of both endemic and threatened species suggest that they are highly vulnerable to extinction as a result of increasing rates of alien plant infestation, urbanization and inappropriate fire regimes.     

Non-linearities, synergisms and plant extinctions in South African fynbos and Australian kwongan

This paper explores the determinants of extinction of endemic plant taxa in mediterranean-climate regions in South Africa and southwestern Australia. Major threats to biodiversity in these areas include agriculture, deforestation, fragmentation, invasive alien organisms and urbanization. Case studies from the two regions show that synergisms between factors can lead to discontinuous, or non-linear, responses that have increased extinction rates (or threaten to) beyond predictions based on simple deterministic processes.     

HLA patterns in pernicious anaemia.

The pattern of HLA antigens was studied in 127 patients with Addisonian pernicious anaemia. The pattern in the whole group of patients differed significantly from that in 586 controls. But different subgroups of the patients had different HLA antigens. Among 27 patients with anaemia associated with endocrine disease there was an increased frequency of HLA-B8, B18, and BW15. The remaining 100 patients, who did not have endocrine disease, showed increased frequencies of HLA-B7 and B12. The positive association with HLA-B12 among this subgroup was confined to 62 patients with severly impaired vitamin B12 absorption, including 13 patients with vitamin B12 neuromyelopathy, who had the highest frequencies of HLA-B7 and B12. The significant heterogeneity in HLA patterns in different clinical subgroups of these patients indicates genetic heterogeneity in pernicious anaemia and explains previous discrepancies in the associations between HLA antigens and pernicious anaemia.