A Comparison of the Chemical Composition of Injured Leaves in Contrast to Uninjured Leaves of Victoria amazonica (Nymphaeaceae)

The object of this paper is to describe chemical and mineralogicalchanges in Victoria leaves that have sustained insect damage. Of 44 elements detected in various plant parts of Victoria amazonica(Poeppig) J. de C. Sowerby (V. regia auctt) Nymphaeaceae, only15 elements showed statistically significant differences inconcentration between insect-damaged leaves and whole (undamaged)leaves of the same plants. Two different types of insect damagewere noted: one was clearly recent, while the other was clearlyolder, probably not differing in time more than three weeks.Mg, Ca, Al, Si, S, Fe, Mn, Li and Ce were significantly moreconcentrated in the damaged leaf sections than in undamagedleaves of the mature plants with unopened buds. In the caseof preflowering plants, Na, Mg, Ca, Al, Si, S, Cl, Fe and Mnwere more prevalent in the damaged tissue than in the unattackedleaves of the same plants. In the former case, Na, K, Cl andP are rapidly lost when damage occurs, while plants that havehad a chance to recover from the damage, as in the case of thepreflowering plant leaves, begin to make up the difference inelemental concentration between the damaged and undamaged leaves. Mineralogical investigation showed that the amount of calcite(CaCO₃), the calcium oxalates weddellite and whewellite, andthe siliceous minerals - low-form cristobalite opal, low-formtridymite opal and quartz-was higher in the recently injuredleaves than in those that had been injured some time previouslyor than in the uninjured leaves. It is hypothesized that theincreased precipitation of minerals resulting from injury ispart of the plants' defence mechanism against further attackby insects or animals. Insect injury, Victoria, leaves, inorganic composition, mineralogy     

A highly conserved nuclear gene for low-level phylogenetics: elongation factor-1 alpha recovers morphology-based tree for heliothine moths

Molecular systematists need increased access to nuclear genes. Highly conserved, low copy number protein-encoding nuclear genes have attractive features for phylogenetic inference but have heretofore been applied mostly to very ancient divergences. By virtue of their synonymous substitutions, such genes should contain a wealth of information about lower-level taxonomic relationships as well, with the advantage that amino acid conservatism makes both alignment and primer definition straightforward. We tested this postulate for the elongation factor-1 alpha (EF-1 alpha) gene in the noctuid moth subfamily Heliothinae, which has probably diversified since the middle Tertiary. We sequenced 1,240 bp in 18 taxa representing heliothine groupings strongly supported by previous morphological and allozyme studies. The single most parsimonious gene tree and the neighbor-joining tree for all nucleotides show almost complete concordance with the morphological tree. Homoplasy and pairwise divergence levels are low, transition/transversion ratios are high, and phylogenetic information is spread evenly across gene regions. The EF-1 alpha gene and presumably other highly conserved genes hold much promise for phylogenetics of Tertiary age eukaryote groups.      

Chick embryo fibroblasts produce two forms of hyaluronidase

Cultured chick embryo fibroblasts derived from skin and skeletal muscle exhibit hyaluronidase activity both associated with the cell layer and secreted into the medium. Although both forms of the enzyme have a number of similar characteristics (R.W. Orkin and B.P. Toole, 1980, J. Biol. CHem. 255), they differ in thermal stability at neutral pH and in behavior on ion-exchange chromatography. Both forms of the enzyme are equally stable at acidic pH for long intervals, but the cell-associated hyaluronidase is significantly less stable than the secreted froms at neutral pH and at temperatures more than or equal to 30 degrees C. Neither the presence of proteases nor inhibitors of hyaluronidase appear to be involved in the cell-asspcoated enzyme. Chromatography of the two forms of hyaluronidase on carboxymethyl cellulose reveals that most (60-90 percent) of the secreted form of the enzyme elutes at a lower ionic strength than the cell- associated enzyme. Treatment of the secreted form of hyaluronidase with neuraminidase shifts its elution profile on carboxymethyl cellulose toward that of the cell-associated form, and also decreases its thermal stability at neutral pH. In contrast, treatment of the secreted form of hyaluronidase with alkaline phosphatase has no detectable effect. These data suggest that the secreted hyaluronidase differs from the cellular form in possessing additional sialic acid residues which endow the former with increased stability in the extracellular milieu.     

Biological staining: mechanisms and theory

New staining techniques continue to be introduced, and older ones continue to be used and improved. Several factors control specificity, selectivity and visibility of the end product in any procedure using dyes, fluorochromes, inorganic reagents or histochemical reactions applied to sections or similar preparations. Local concentration of the tissue target often determines the intensity of the observed color, as does the fine structure within the object being stained, which may facilitate or impede diffusion of dyes and other reagents. Several contributions to affinity control the specificity of staining. These include electrical forces, which result in accumulation of dye ions in regions of oppositely charged tissue polyions. Weaker short-range attractions (hydrogen bonding, van der Waals forces or hydrophobic bonding, depending on the solvent) hold dyes ions and histochemical end products in contact with their macromolecular substrates. Nonionic forces can also increase visibility of stained sites by causing aggregation of dye molecules. Covalent bonds between dye and tissue result in the strongest binding, such as in methods using Schiff's reagent and possibly also some mordant dyes. The rate at which a reagent gains access to or is removed from targets in a section or other specimen affect what is stained, especially when more then one dye is used, together or sequentially. Rate-controlled staining is greatly influenced by the presence and type of embedding medium, such as a resin, that infiltrates the tissue. The rates of chemical reactions are major determinants of outcome in many histochemical techniques. Selective staining of different organelles within living cells is accomplished mainly with fluorochromes and is controlled by mechanisms different from those that apply to fixed tissues. Quantitative structure-activity relations (QSAR) of such reagents can be derived from such molecular properties as hydrophilic-hydrophobic balance, extent of conjugated bond systems, acid-base properties and ionic charge. The QSAR correlates with staining of endoplasmic reticulum, lysosomes, mitochondria, DNA, or the plasma membranes of living cells.     

MAGI: Methylation analysis using genome information

By incorporating annotation information into the analysis of next-generation sequencing DNA methylation data, we provide an improvement in performance over current testing procedures. Methylation analysis using genome information (MAGI) is applicable for both unreplicated and replicated data, and provides an effective analysis for studies with low sequencing depth. When compared with current tests, the annotation-informed tests provide an increase in statistical power and offer a significance-based interpretation of differential methylation.     

The chemical composition of Astragalus: a comparison of seleniferous and non-seleniferous plants growing side by side

COWGILL, U. M. & LANDENBERGER, B.D., 1992. The chemical composition of Astragalus: a comparison of seleniferous and non-seleniferous plants growing side by side. This paper describes how non-seleniferous plant species coexist with seleniferous ones and what chemical changes occur in non-seleniferous species that allow the toleration of large quantities of volatilized Se-bearing compounds. These compounds are known for their phytotoxicity as well as for their toxicity to mammals and insects. Twenty-three sites (Colorado, Utah, New Mexico, U.S.A.) were examined over a 6-year period. Plants collected from these sites were divided into four groups: seleniferous astragali, seleniferous Brassicaceae, non-seleniferous astragali and non-seleniferous associated genera. Furthermore, it was possible to categorize these sites: Type 1 sites supported all four groups of plants, Type 2 sites contained only seleniferous astragali, whereas Type 3 sites sustained only non-seleniferous astragali. When concentrations of Cu, Zn (P <0.0001), Si (P<0.02), As, Pb (P<0.03) and Cs (P<0.05) were measured, the values for those seleniferous astragali that coexisted with other species were significantly different from the values found for those seleniferous astragali that grew alone. There were four areas that in some years supported all four groups of plants (Type 1 site) and in other years contained only seleniferous astragali. In this way, the latter may be used as a chemical control for the former. The seleniferous astragali collected at Type 1 sites always contained more Cu, As, Si and Pb than the solitary astragali of Type 2 sites. When seleniferous astragali of Type 1 sites that support all four groups of plants develop in a year where the usually associated species of past years are absent, they contain in their tissues concentrations of Cu, As, Si, Pb, Zn and Cs typical of Type 2 sites where the seleniferous astragali grew alone. Non-seleniferous astragali of Type 1 sites that support all four groups of plants have a chemical composition that differs significantly in the quantity of 15 elements from non-seleniferous astragali of Type 3 sites where the latter grew alone. Since allelochemicals such as phenolic acids and flavonoids are well known to be able to alter mineral absorption by plants and since the astragali are known to produce such substances, it is suggested that the possible production of phenolic acids and flavonoids may permit coexistence of seleniferous plants with non-seleniferous ones and thus explain the chemical differences among the plants of the four types of sites.