Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci

To study the role of type III-secreted effectors in the host adaptation of the tobacco ( Nicotiana sp.) pathogen Pseudomonas syringae pv. tabaci , a selection of seven strains was first characterized by multilocus sequence typing (MLST) to determine their phylogenetic affinity. MLST revealed that all strains represented a tight phylogenetic group and that the most closely related strain with a completely sequenced genome was the bean ( Phaseolus vulgaris ) pathogen P. syringae pv. phaseolicola 1448A. Using primers designed to 21 P. syringae pv. phaseolicola 1448A effector genes, it was determined that P. syringae pv. phaseolicola 1448A shared at least 10 effectors with all tested P. syringae pv. tabaci strains. Six of the 11 effectors that failed to amplify from P. syringae pv. tabaci strains were individually expressed in one P. syringae pv. tabaci strain. Although five effectors had no effect on phenotype, growth in planta and disease severity of the transgenic P. syringae pv. tabaci expressing hopQ1-1 _Pph1448A were significantly increased in bean, but reduced in tobacco. We conclude that hopQ1-1 has been retained in P. syringae pv. phaseolicola 1448A, as this effector suppresses immunity in bean, whereas hopQ1-1 is missing from P. syringae pv. tabaci strains because it triggers defences in Nicotiana spp. This provides evidence that fine-tuning effector repertoires during host adaptation lead to a concomitant reduction in virulence in non-host species.     

Phenotypic variation in male and worker encapsulation response in the bumblebee Bombus terrestris

Abstract.  1. Life-history traits such as immunity are often characterised by the presence of large phenotypic variation, but it often remains unclear how and why this variation is maintained by selection.
2. Here an annual social insect, the bumblebee Bombus terrestris , was used to study variation in encapsulation response of males and workers. Bumblebees are a suitable system to study offspring immunity because they are host to a broad variety of different parasites. Bumblebee males, in particular, have a long lifespan compared with other social insect males and their immunity should therefore be an important element for colony reproductive success.
3. Encapsulation response, which was used here as a measurement for the generalised immune defence capacity of an individual, was found to be a highly variable trait. High levels of worker response correlated with low levels of colony parasitism rates.
4. Encapsulation response was found to be (a) lower in males compared with sister workers, and (b) lower in late-produced cohorts compared with early ones.
5. In colonies with delayed sexual reproduction, males had a lower encapsulation response. Thus, investments into immunity seemed reduced in later male cohorts and those eclosing later in the season, perhaps because males had a shorter expected remaining time to acquire matings. The results presented add further evidence that immune defence is a key variable defining colony fitness in social insects.     

Geographic patterns of diversification: an example with ectoparasitic insects

On any spatial scale, the species composition of a taxonomic group often departs from a phylogenetically random subset drawn from the pool of species available on a higher scale. Analysis of the uneven representation of related lineages in different assemblages can reveal the action of various forces shaping their diversification. For any assemblage, unequal diversification among lineages can be estimated using diversity skewness, an index of the balance of a phylogenetic tree whose values increase with increasing differences in diversification rates among tree branches. We tested for geographical patterns in the diversity skewness of flea assemblages parasitic on small mammals in 26 distinct geographic localities from the Palaearctic and 15 from the Nearctic. Overall, diversity skewness of the Nearctic flea assemblage was unexpectedly high compared to that of the global flea fauna, whereas that of the Palaearctic did not depart from the expectations of a null model. On a smaller scale, the diversity skewness of local flea assemblages was sometimes lower, sometimes higher, but, in most of the 41 localities, it did not differ significantly from that of random subsets taken from the species pool available on the larger spatial scale (either the world fauna or that of the biogeographical realm, i.e. Palaearctic or Nearctic). More importantly, among Palaearctic assemblages, diversity skewness increased with increasing latitude and/or decreasing mean air temperatures. The different patterns observed in the Palaearctic and Nearctic may be in part due the fact that flea diversification appears to have been more intense in the former than the latter, and to differences between them in relief and glacial history. Temperature‐driven speciation rates may well explain the latitudinal gradient in diversity skewness in the Palaearctic. The results illustrate the action of various biogeographical processes in shaping the uneven differentiation of flea lineages on different spatial scales. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 95 , 807–814.     

Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights

Comprehensive taxonomic sampling can vastly improve the accuracy of phylogenetic reconstruction. Here, we present the most inclusive phylogenetic analysis of Arvicolinae (Mammalia, Rodentia) to date, combining all published cytochrome  b gene sequences of greater than 1097 bp and new sequences from two monotypic genera. Overall, the phylogenetic relationships between 69 species of voles and lemmings, representing 18 genera and 10 tribes, were studied. By applying powerful modern approaches to phylogenetic reconstruction, such as maximum likelihood and Bayesian analysis, we provide new information on the early pulse of evolution within the Arvicolinae. While the position of two highly divergent lineages, Phenacomys and Ondatra , could not be resolved, the tribe Lemmini, appeared as the most basal group of voles. The collared lemmings (Dicrostonychini) grouped together with all of the remaining tribes. The two previously unstudied monotypic genera Dinaromys and Prometheomys form a moderately well-supported monophyletic clade, possibly a sister group to Ellobius (Ellobiusini). Furthermore, with one exception, all tribes ( sensu Musser & Carleton, 2005) proved to be monophyletic and can thus be regarded as meaningful evolutionary entities. Only the tribe Arvicolini emerged as paraphyletic in both analyses because of the unresolved phylogenetic position of Arvicola terrestris . Steppe voles of the genus Lagurus were solidly supported as a sister group to the Microtus and allies clade.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 825–835.     

Functional and Structural Chromosome Analyses in Autotetraploid Silene latifolia

Recent immunocytological and molecular data show that heterochromaticnuclear regions, both constitutive and facultative, are modifieddifferently (cytosine hypermethylation and histone hypoacetylation)and late replicating, when compared to euchromatin. Intrusiveand/or additive (supernumerary) DNA sequences are often functionallysilenced; this is accompanied by their heterochromatinization.In this work we present a number of karyological studies onautotetraploid female cells of Silene latifolia (syn. Melandriumalbum). Immunofluorescence analyses do not indicate any globaldifferences in DNA methylation, histone H4 acetylation, andchromosome replication patterns which could arise as a consequenceof the duplication of the whole chromosome set of the originaldiploid genome. Similarly, the number of silver-positive nucleoliroughly correlates to the ploidy level. Early replication andH4 hyperacetylation have been detected at all subterminal chromosomeregions. This, together with cDNA in situ hybridization patterns,indicates the localization of gene-rich regions. DNA methylationand chromosome replication patterns, but not histone H4 acetylation,show differences among the four X chromosomes present: one tothree X chromosomes were observed as hypermethylated and/orlate replicating. Taken together, the data demonstrate thatthere is no overall silencing of the additional two sets ofautosomes in the tetraploid cells, but the X chromosomes couldbe subject to an irregular dosage compensation. Copyright 1999Annals of Botany Company DNA methylation, histone acetylation, polyploidy, replication patterns, sex chromosomes, Silene latifolia (syn.Melandrium album ).