Approaches to breeding for salinity tolerance - a case study on Porteresia coarctata

Cereals are the world's major source of food for human nutrition. Among these, rice (Oryza sativa) is the most prominent and represents the staple diet for more than two-fifths (2.4 billion) of the world's population, making it the most important food crop of the developing world (Anon., 2000a). Rice production in vast stretches of coastal areas is hampered due to high soil salinity. This is because rice is a glycophyte and it does not grow well under saline conditions. In order to increase rice production in these areas there is a need to develop rice varieties suited to saline environments. Research has shown that Porteresia coarctata, a highly salt tolerant wild relative of rice growing in estuarine soils, is an important material for transferring salt tolerant characteristics to rice. It is quite possible that Porteresia may be used as a parent for evolving better and truly salt resistant varieties. The inadequate results and the difficulties associated with conventional breeding techniques necessitate the use of the tools of crop biotechnology in unravelling some of the characteristics of Porteresia that have been highlighted in this report. In view of the limited resources available for increasing salinity tolerance to the breeders to wild rice germplasm, Porteresia is undoubtedly one of the key source species for elevating salinity tolerance in cultivated rice.     

A Note on the Growth of Thiobacillus ferrooxidans on Solid Medium

An iron oxidizing strain of Thiobacillus ferrooxidans has been grown on solid medium using purified agar, carrageenan (Type 1) and agarose. This strain produces isolated and transferable colonies after 7 d incubation. Growth (increase in viable cells) by the direct plating method has been followed in relation to iron oxidation. Acidity, agar concentration and phosphate influenced colony development on solid medium.     

The host range of Tobacco streak virus in India and transmission by thrips

Tobacco streak virus (TSV) recently caused an epidemic in peanut (= groundnut, Arachis hypogaea) crops in Andhra Pradesh, India. In the epidemic area TSV occurred in many widely distributed weeds of which Parthenium hysterophorus probably plays a major role in its spread by thrips. Three thrips species, Megalurothrips usitatus, Frankliniella schultzei and Scirtothrips dorsalis were vectors in the presence of infected pollen. Of crop species, Helianthus annuus (sunflower) and Tagetes patula (marigold) could act as sources of inoculum. In limited tests, the virus was not seed‐transmitted in the peanut cultivar JL‐24 or in the sunflower hybrids KBSH‐41, ‐42, ‐44, and ‐50, MSFH‐17 and ZSH‐976. Strategies adopted to reduce the incidence of TSV are discussed.     

Association of <Emphasis Type="Italic">ADAM33</Emphasis> gene polymorphisms with adult-onset asthma and its severity in an Indian adult population

ADAM33, a member of the ADAM (a disintegrin and metalloprotease) gene family, is an asthma susceptibility gene originally identified by positional cloning. In the present study, we investigated the possible association of five single-nucleotide polymorphisms (SNPs) in the ADAM33 (rs511898, rs528557, rs44707, rs597980 and rs2787094) with adult-onset asthma in an Indian population. The study included 175 patients with mild intermittent (n = 44), mild persistent (n = 108) or moderate persistent (n = 23) subgroups of asthma, and 253 nonasthmatic control individuals. SNPs were genotyped with the help of restriction fragment length polymorphism polymerase chain reaction (RFLP-PCR) method, and data were analysed using chi-square test and logistic regression model. Bonferroni’s correction for multiple comparisons was applied for each hypothesis. Genotypes and allele frequencies of SNPs rs511898 and rs528557 were significantly associated with adult-onset asthma (P = 0.010-<0.001). A significant association of the homozygous mutant genotype and mutant alleles of SNPs rs2787094, rs44707 and rs597980 with the asthma was also observed (P = 0.020-<0.001). A positive association between asthma and haplotypes AGCCT, GGCCT, AGACT, GCAGT, GGACT, ACCCC and AGACC were also found (P = 0.036-<0.001, OR = 2.07–8.49). Haplotypes AGCGT, GCAGC, ACAGC, ACAGT, GGAGC and GGCGT appear to protect against asthma (P = 0.013-<0.0001, OR = 0.34–0.10). Our data suggest that ADAM33 gene polymorphisms serve as genetic risk factors for asthma in Indian adult population.     

Isolation by environmental distance in mobile marine species: molecular ecology of franciscana dolphins at their southern range

The assessment of population structure is a valuable tool for studying the ecology of endangered species and drafting conservation strategies. As we enhance our understanding about the structuring of natural populations, it becomes important that we also understand the processes behind these patterns. However, there are few rigorous assessments of the influence of environmental factors on genetic patterns in mobile marine species. Given their dispersal capabilities and localized habitat preferences, coastal cetaceans are adequate study species for evaluating environmental effects on marine population structure. The franciscana dolphin, a rare coastal cetacean endemic to the Western South Atlantic, was studied to examine these issues. We analysed genetic data from the mitochondrial DNA and 12 microsatellite markers for 275 franciscana samples utilizing frequency‐based, maximum‐likelihood and Bayesian algorithms to assess population structure and migration patterns. This information was combined with 10 years of remote sensing environmental data (chlorophyll concentration, water turbidity and surface temperature). Our analyses show the occurrence of genetically isolated populations within Argentina, in areas that are environmentally distinct. Combined evidence of genetic and environmental structure suggests that isolation by distance and a process here termed isolation by environmental distance can explain the observed correlations. Our approach elucidated important ecological and conservation aspects of franciscana dolphins, and has the potential to increase our understanding of ecological processes influencing genetic patterns in other marine species.     

Effect of Aflatoxins on the Changes in Fats and Carbohydrates during Germination and on the Symbiotic Fixation of Nitrogen in Peanuts [Arachis hypogaea]

The rate of hydrolysis of fats during germination of peanuts decreased with the increase in the concentration of aflatoxins. Free-reducing sugars increased up to 96 h of germination, and thereafter their concentrations remained more or less constant. However, the rate of formation of free-reducing sugars decreased with increase in the concentration of aflatoxins. At all the stages of germination the rate of formation of sucrose decreased with increase in the concentration of aflatoxins. The aflatoxins stimulated the fixation of nitrogen during the preflowering stage, leading to an increase in the concentrations of soluble nitrogen in roots and protein in shoots: the maximum amount of total nitrogen fixed and that excreted into the soil was at a concentration of 2.5 μg/ml aflatoxins.