Short-term propamocarb exposure induces hepatic metabolism disorder associated with gut microbiota dysbiosis in adult male zebrafish

Propamocarb (PM) is a pesticide that is widely used to protect cucumbers and other plants from downy mildew.Recently,some studies indicated that PM exposure had potential toxic effects in animals.In this study,adult male zebrafish were exposed to 100 and 1000 μg/l PM for 7 days to assess its effects on metabolism and the gut microbiota.We observed a significant decrease in triglyceride (TG) in the livers of zebrafish that were exposed to 1000 μg/l PM for 7 days.At the same time,some genes related to glycolysis and lipid metabolism in the livers of zebrafish,including hexokinase-1 (HK1),pyruvate kinase (PK),acyi-CoA oxidase (Aco),peroxisome proliferator activated receptor alpha (Ppar-α),apolipoprotein A-Ⅳ-like (Apo),Acetyl CoA carboxylase-1 (Acc1),diacylglycerol acyltransferase (Dgat),and fatty acid synthase (Fas),were also decreased significantly after PM exposure.Based on GC-MS metabolomics analysis,a total of 48 metabolites changed significantly in the 1000 μg/l PM treatment group in comparison with the control group.These altered metabolites were mainly associated with the glycolysis,amino acid metabolism,and lipid metabolism pathways.Interestingly,we further found that the 1000 μg/l PM treatment group also showed significant elevations in Proteobacteria,Bacteroidetes,and Firmicutes at the phylum level.Sequencing of the 16S rRNA gene in the V3-V4 region also showed a significant change in the abundance and diversity of the gut microbiota in the 1000 μg/l PM treatment group.Our results indicated that exposure to PM for a short time could induce hepatic metabolic disorders and gut microbiota dysbiosis in adult male zebrafish.     

Comparison of tree sprouting in three regeneration stages of an evergreen broadleaved forest in a karst landscape, SW China

Little is known about the role of tree sprouting in the regeneration of karst forest communities. In Shilin Stone Forest Geographical Park, southwestern China, all genets with the largest stem ?3 cm DBH (diameter at breast height) and/or stumps ?3 cm BD (basal diameter) were identified and number of sprouts counted in 10 transects (10 m × 100 m) in each of three evergreen broadleaved forest stands representing three regeneration stages (about 10, 20, and 30 years old). Species with >10 genets accounted for 72.4% of the 76 species, and all of them showed evidence of sprouting. One-third to two-thirds of the genets in the three forests were sprouting, with an average of 4.0–5.7 sprouts per sprouting genet. Sprouting capability (sprouting genets/total genets) and intensity (sprouts per sprouting genet) differed significantly among the three forest stages. More than 90% of the damaged genets were sprouting. The number of sprouts in a non-damaged genet was determined by intrinsic sprouting ability, and the number of sprouts in damaged genets was determined by stump size. As the forest developed, percentage of damaged genets increased, the portion of shoots ≥3 cm DBH co-existing in a genet decreased, and the portion of shoots <3 cm DBH sprouted from damaged genet increased. Thus the role of sprouting changed from contributing recruitment in the young stage to persistence in the later stage.     

Simulating the rice yield change in the middle and lower reaches of the Yangtze River under SRES B2 scenario

As one of the most important crops in China, rice accounts for 18% of the country’s total cultivated area. Increasing atmospheric CO₂ concentration and associated climate change may greatly affect the rice productivity. Therefore, understanding the impacts of climate change on rice production is of great significance. This paper aims to examine the potential impacts of future climate change on the rice yield in the middle and lower reaches of the Yangtze River, which is one of the most important food production regions in China. Climate data generated by the regional climate Model PRECIS for the baseline (1961–1990) and future (2021–2050) period under IPCC SRES B2 scenario were employed as the input of the rice crop model ORYZA2000. Four experimental schemes were carried out to evaluate the effects of future climate warming, CO₂ fertilization and water managements (i.e., irrigation and rain-fed) on rice production. The results indicated that the average rice growth duration would be shortened by 4 days and the average rice yield would be declined by more than 14% as mean temperature raised by 1.5 °C during the rice growing season in 2021–2050 period under B2 scenario. This negative effect of climate warming was more obvious on the middle and late rice than early rice, since both of them experience higher mean temperature and more extreme high temperature events in the growth period from July to September. The significance effect of the enhanced CO₂ fertilization to rice yield was found under elevated CO₂ concentrations in 2021–2050 period under B2 scenario, which would increase rice yield by more than 10%, but it was still not enough to offset the negative effect of increasing temperature. As an important limiting factor to rice yield, precipitation contributed less to the variation of rice yield than either increased temperature or CO₂ fertilization, while the spatial distribution of rice yield depended on the temporal and spatial patterns of precipitation and temperature. Compared to the rain-fed rice, the irrigated rice generally had higher rice yield over the study area, since the irrigated rice was less affected by climate change. Irrigation could increase the rice yield by more than 50% over the region north of the Yangtze River, with less contribution to the south, since irrigation can relieve the water stress for rice growing in the north region of the study area. The results above indicated that future climate change would significantly affect the rice production in the middle and lower reaches of the Yangtze River. Therefore, the adverse effect of future climate change on rice production will be reduced by taking adaptation measures to avoid disadvantages. However, there is uncertainty in the rice production response prediction due to the rice acclimation to climate change and bias in the simulation of rice yield with uncertainty of parameters accompanied with the uncertainty of future climate change scenario.     

Physiological foundation for the differences of long-term water use efficiency among Populus deltoides clones

With randomized complete block design, long-term water use efficiency (WUE_L), photosynthetic parameters (net photosynthetic rate Pn, transpiration rate Tr, stomatal conductance Gs, instantaneous water use efficiency WUE_i, maximum photosynthetic rate P max, light saturation pointLSP, carboxylic efficiency Ce), stomatal properties (frequency, size, superior/inferior stoma amount ratio) and root/shoot ratio of twelve Populus deltoids clones were studied under water stress in a greenhouse. Four water treatments were designed, namely, well-watered condition, slight water stress, moderate water stress, and severe water stress. Although the volumes of irrigated water for different treatments were the same, the irrigation intervals were strictly controlled. The results showed that long-term water use efficiency (WUE_L) differences among tested clones were obvious and became greater with the increase in water stress. J₂, J₆, J₇, J₈, and J₉ were excellent clones with high WUE_L. Stomatal frequency, stomatal size, Gs, Tr, Pn, and root/shoot ratio of J₂et al were moderate, whereas the superior/inferior ratio, P_max, LSP, Ce of J2et al were higher than other clones. The interrelations between WUE_L and the physiological parameters were analyzed. The results revealed that the WUE_L differences were induced by a series of physiological parameters, and clones with higher WUE_L always had strong photosynthetic capacity, higher WUE_i, and optimum root/shoot ratio.     

Changes of 5＇ Terminal Nucleotides of PCR Primers Causing Variable T-A Cloning Efficiency

T-A cloning takes advantage of the unpaired adenosyl residue added to the 3＇ terminus of amplified DNAs by Taq and other thermostable DNA polymerase and uses a Ilnearlzed plasmld vector with a protruding 3＇ thymldylate residue at each of Its 3＇ termini to clone polymerase chain reaction （PCR）-derived DNA fragments. It Is a simple, reliable, and efficient Ilgatlon-dependent cloning method for PCR products, but the drawback of variable cloning efficiency occurs during application. In the present work, the relationship between variable T-A cloning efficiency and the different 5＇ end nucleotlde base of primers used In PCR amplification was studied. The results showed that different cloning efficiency was obtained with different primer pairs containing A, T, C and G at the 5＇ terminus respectively. The data shows that when the 5＇ end base of primer pair was adenosyl, more white colonies could be obtained In cloning the corresponding PCR product In comparison with other bases. And the least white colonies were formed when using the primer pair with 5＇ cytldylate end. The gluanylate end primers resulted In almost the same cloning efficiency In the white colonies amount as the thymldylate end primer did, and this efficiency was much lower than that of adenosyl end primers. This presumably is a consequence of variability In 3＇dA addition to PCR products mediated by Taq polymerase. Our results offer instructions for primer design for researchers who choose T-A cloning to clone PCR products.     

Locomotion of Gymnarchus Niloticus： Experiment and Kinematics

In addition to forward undulatory swimming, Gymnarchus niloticus can swim via undulations of the dorsal fin while the body axis remains straight; furthermore, it swims forward and backward in a similar way, which indicates that the undulation of the dorsal fin can simultaneously provide bidirectional propulsive and maneuvering forces with the help of the tail fin. A high-resolution Charge-Coupled Device （CCD） imaging camera system is used to record kinematics of steady swimming as well as maneuvering in G. niloticus. Based on experimental data, this paper discusses the kinematics （cruising speed, wave speed, cycle frequency, amplitude, lateral displacement） of forward as well as backward swimming and maneuvering. During forward swimming, the propulsive force is generated mainly by undulations of the dorsal fin while the body axis remains straight. The kinematic parameters （wave speed, wavelength, cycle frequency, amplitude） have statistically significant correlations with cruising speed. In addition, the yaw at the head is minimal during steady swimming. From experimental data, the maximal lateral displacement of head is not more than 1% of the body length, while the maximal lateral displacement of the whole body is not more than 5% of the body length. Another important feature is that G. niloticus swims backwards using an undulatory mechanism that resembles the forward undulatory swimming mechanism. In backward swimming, the increase of lateral displacement of the head is comparatively significant; the amplitude profiles of the propulsive wave along the dorsal fin are significantly different from those in forward swimming. When G. niloticus does fast maneuvering, its body is first bent into either a C shape or an S shape, then it is rapidly unwound in a travelling wave fashion. It rarely maneuvers without the help of the tail fin and body bending.     

A developmentally regulated hydroxyproline-rich glycoprotein in maize pericarp cell walls

We have studied the accumulation of peptidyl hydroxyproline in the pericarp of developing maize (Zea mays L., Golden cross Bantam sweet corn) kernels. Although this hydroxyproline accumulates throughout development, it is most soluble and its content per milligram dry weight greatest at midmaturation stages of development. Salt-soluble proteins containing this hydroxyproline from isolated cell walls of developing kernels were fractionated on a CsCl density gradient and on a Chromatofocusing column, resulting in the purification of an hydroxyproline-rich glycoprotein, PC-1. PC-1 is a basic protein of approximately 65 to 70 kilodaltons in molecular weight with an isoelectric point of at least 10.2 and a density of 1.38 to 1.39 in CsCl. Amino acid composition data indicate that it is rich in hydroxyproline, threonine, proline, lysine, and glycine. Its relation to dicot extensin is discussed.