Sexual size dimorphism and morphometric sexing in a North African population of Laughing Doves Spilopelia senegalensis

Like the majority of Columbiformes, the Laughing Dove Spilopelia senegalensis is sexually monomorphic in plumage, but seems to be slightly dimorphic in size. However, due to the lack of studies little is known about the sexual size dimorphism in this species. In this work, we used morphometric data on a sample of 61 Laughing Doves from southern Tunisia, and sexed using a DNA-based method, to assess size differences between males and females and to determine a discriminant function useful for sex identification. The results showed that wing length was the most dimorphic trait, which could be due to the effects of sexual selection. The best function for the discrimination between sexes included wing length and head length, which is comparable with findings on other dove species. This discriminant function accurately classified 89% of birds, providing a rapid and accurate tool for sex identification in the studied population. Further data from different populations are needed for firmer conclusions about the extent of sexual size dimorphism and the reliability of the morphometric sexing approach in this dove species.     

Distribution-abundance relationship for passerines breeding in Tunisian oases: test of the sampling hypothesis

The positive relationship between local abundance and distribution of species is a widely recognized pattern in community ecology. However, it has been suggested that this relationship can simply be an artefact of sampling because locally rare species are less detectable then locally abundant ones, and hence their distribution can easily be underestimated. Here, we use count data to investigate the relationship between distribution and abundance of passerines breeding in a sample of oases from southern Tunisia, and we provide a test of the sampling artefact hypothesis. In particular, we checked for a difference in detection probability between localized and widespread species, and we tested if increasing the sampling effort affects the significance of the relationship. A significant positive relationship between the average local abundance of passerine species and the proportion of occupied oases was found. The use of a capture-recapture approach allowed us to estimate and to compare the detection probabilities of localized and widespread species subsets. We found that localized species were locally less detectable than widespread species, which is consistent with the main assumption of the sampling artefact hypothesis. However, increasing the detection probability of species by conducting more counts did not affect the significance of the relationship, which did not give support to the sampling artefact hypothesis. Our work implies that sampling contributed to the distribution-abundance relationship we found, but that it is unlikely that such a relationship could entirely be explained by an artefact of sampling. It also underlines the insight that can be gained by using probabilistic approaches of estimating species number and detection probability when attempting to disentangle sampling from ecological effects in community ecology studies.     

Steroid 21-hydroxylase gene mutational spectrum in 50 Tunisian patients: Characterization of three novel polymorphisms

Congenital adrenal hyperplasia (CAH) is an autosomal recessive disease of steroid biosynthesis in humans. More than 90% of all CAH cases are caused by mutations of the 21-hydroxylase gene (CYP21A2), and approximately 75% of the defective CYP21A2 genes are generated through an intergenic recombination with the neighboring CYP21A1P pseudogene. In this study, the CYP21A2 gene was genotyped in 50 patients in Tunisia with the clinical diagnosis of 21-hydroxylase deficiency. CYP21A2 mutations were identified in 87% of the alleles. The most common point mutation in our population was the pseudogene specific variant p.Q318X (26%). Three novel single nucleotide polymorphism (SNP) loci were identified in the CYP21A2 gene which seems to be specific for the Tunisian population. The overall concordance between genotype and phenotype was 98%. With this study the molecular basis of CAH has been characterized, providing useful results for clinicians in terms of prediction of disease severity, genetic and prenatal counseling.     

Diversity of waterbirds wintering in Douz wetlands (south Tunisia): factors affecting wetland occupancy and species richness

Understanding the environmental factors shaping wetland attractiveness for waterbirds is an important question in wetland ecology and for conservation purposes. However, detailed data from numerous North African wetlands, notably those situated in inland areas, are still lacking. Thus, the aim of this study was to identify the factors influencing wetland use by waterbirds wintering in one of such poorly known habitat systems, namely the Saharan wetland complex of Douz, in south-western Tunisia. Thirty-four waterbird species (20 wading birds and 14 waterfowl species) were found to winter in this area. Using discriminant function analyses, we found that wetland size was the unique variable discriminating between occupied and unoccupied sites for total waterbirds and wading birds, while waterfowl distribution was related to both wetland size and water depth. Wetland size also provided the strongest predictor of species richness of wading birds, waterfowl and total waterbirds. Overall, our findings highlight the importance of wetland size as a key factor determining the attractiveness of wetlands for waterbirds wintering in the Saharan wetland complex of Douz. The possible explanations of this wetland size effect are discussed.     

Bird nest predation in a southern Tunisian oasis habitat: No evidence of “edge effect”

Numerous ornithological studies conducted in patchy habitats have linked high intensity of nest predation with habitat edges. This “edge effect” hypothesis was primarily investigated in temperate, boreal and tropical fragmented forests, and there is a need for investigations from different habitat systems. Here we provide the results of one study on bird nest predation in relation to edge context in one oasis in southern Tunisia. Our aim was to assess the importance of nest predation as a source of nest failure in the studied oasis and to test if the edge effect hypothesis applies in this habitat system. We found that although predation represents an important source of nest failure in all studied species, the edge effect hypothesis does not seem to apply in the studied oasis. Indeed, daily nest predation rate did not vary with edge context for all studied species, which could be explained by the fact that nest predator guild is mainly composed of small species that use oasis interior and edges in similar ways. The effects of predators coming from the surrounding areas do not seem to significantly increase nest predation rates in oasis edges compared to oasis interior. We also found that nest predation rates were similar for all bird species, suggesting that among-species differences in nest concealment and nesting behaviour did not seem to account for nest survival in the studied oasis. However, further more detailed species-level studies are needed to test this hypothesis and to identify more accurately the determinants of nest predation in the oasis habitat.     

Broad-range PCR,cloning and sequencing of the full 16S rRNA gene for detection of bacterial DNA in synovial fluid samples of Tunisian patients with reactive and undifferentiated arthritis

Introduction

Broad-range rDNA PCR provides an alternative, cultivation-independent approach for identifying bacterial DNA in reactive and other form of arthritis. The aim of this study was to use broad-range rDNA PCR targeting the 16S rRNA gene in patients with reactive and other forms of arthritis and to screen for the presence of DNA from any given bacterial species in synovial fluid (SF) samples.

Methods

We examined the SF samples from a total of 27 patients consisting of patients with reactive arthritis (ReA) (n = 5), undifferentiated arthritis (UA) (n = 9), rheumatoid arthritis (n = 7), and osteoarthritis (n = 6) of which the latter two were used as controls. Using broad-range bacterial PCR amplifying a 1400 bp fragment from the 16S rRNA gene, we identified and sequenced at least 24 clones from each SF sample. To identify the corresponding bacteria, DNA sequences were compared to the EMBL (European Molecular Biology Laboratory) database.

Results

Bacterial DNA was identified in 20 of the 27 SF samples (74, 10%). Analysis of a large number of sequences revealed the presence of DNA from more than one single bacterial species in the SF of all patients studied. The nearly complete sequences of the 1400 bp were obtained for most of the detected species. DNA of bacterial species including Shigella species, Escherichia species, and other coli-form bacteria as well as opportunistic pathogens such as Stenotrophomonas maltophilia and Achromobacter xylosoxidans were shared in all arthritis patients. Among pathogens described to trigger ReA, DNA from Shigella sonnei was found in ReA and UA patients. We also detected DNA from rarely occurring human pathogens such as Aranicola species and Pantoea ananatis. We also found DNA from bacteria so far not described in human infections such as Bacillus niacini, Paenibacillus humicus, Diaphorobacter species and uncultured bacterium genera incertae sedis OP10.

Conclusions

Broad-range PCR followed by cloning and sequencing the entire 16S rDNA, allowed the identification of the bacterial DNA environment in the SF samples of arthritic patients. We found a wide spectrum of bacteria including those known to be involved in ReA and others not previously associated with arthritis.     

Deletion of late cornified envelope genes,LCE3C_LCE3B-del,is not associated with psoriatic arthritis in Tunisian patients

A deletion of two genes from the late cornified envelope (LCE), LCE3B and LCE3C within epidermal differentiation complex on chromosome 1 was shown to be associated with both psoriasis and psoriatic arthritis (PsA) in several populations. To assess whether this deletion may contribute to the genetic predisposition to PsA in Tunisia, a total of 73 patients with PsA and 120 healthy matched controls were screened for the deletion, LCE3C_LCE3B-del, and its tag SNP, rs4112788. We also evaluated a possible relationship between PSORS1 and LCE3C_LCE3B-del through genotyping two proxy markers to HLA-C (rs12191877 and rs2073048). Our results did not provide evidence for association between the LCE3C_LCE3B-del nor the rs4112788 and the PsA. Similarly, no significant epistatic effect was observed. Our data suggest that The LCE deletion, previously identified in patients with psoriasis, is not of a major importance in the development of PsA in Tunisian patients supporting the current perception that different genetic risk factors contribute to skin and joint disease. However, these results need to be confirmed by additional large-scale studies of Tunisian PsA patients and controls.     

Wintering waterbird assemblages in the central part of the Gulf of Gabès in southern Tunisia

Although the Gulf of Gabès is recognised as an Important Bird Area, several aspects of the ecology of waterbirds inhabiting this area still need to be investigated. We observed how waterbird foraging guilds varied among habitats. In total, 49 species belonging to 16 families were recorded. Winter visitors accounted for 73% of counts. The avifauna was dominated by shorebirds (52% of records), followed by large wading birds (25%), open-water birds (18%) and waterfowl (5%). However, the structure of local waterbird communities and their composition in terms of foraging guilds varied according to habitat type. The bird communities of sandy beaches were dominated by open-water birds, whereas large mudflats were dominated by shorebirds, and wadi estuaries showed a more even representation of foraging guilds. Locally rare species had narrow distributions, whereas locally abundant species were found widely within the gulf. For four species the 1% population level criterion of the Ramsar Convention was exceeded. Overall, our results show that the Gulf of Gabès hosts important numbers of waterbirds with different ecological requirements, which confirms the importance of this gulf as a wintering area for Palearctic waterbirds.     

Distribution and abundance patterns of a newly colonizing species in Tunisian oases: the Common Blackbird Turdus merula

We investigated distribution and abundance patterns of a recently arrived species in the oases of southern Tunisia: the Common Blackbird Turdus merula . In this system, we expected that the vegetation structure and geographical locations of oases would have played an important part in shaping the patterns of oasis occupancy and local abundance. Using data collected at 53 oases during two breeding seasons, we found that Blackbird occurrence in a given oasis depended mainly on its presence at neighbouring oases. However, vegetation structure did not prove to be a relevant predictor of Blackbird occurrence. Within occupied oases, local abundance was associated with vegetation structure, namely with the diversity and abundance of the two lowest vegetation layers: fruit trees and herbaceous plants. The presence of Blackbirds at neighbouring oases was not found to account for local abundance. Overall, our results suggest that the distribution and abundance of this newly colonizing species in the southern Tunisian oasis system are influenced by processes acting at two different spatial scales. Landscape-scale processes (i.e. dispersal and colonization from nearby occupied oases) are likely to play an important role in shaping the pattern of oasis occupancy, whereas local-scale factors seem to be more relevant in determining the abundance of locally established populations.     

Passerine abundance and diversity in a polluted oasis habitat in south-eastern Tunisia

Gabès region, in south-eastern Tunisia, is nowadays considered as one of the most remarkable pollution hotspots in the Mediterranean due to the emissions of the Gabès-Ghannouche factory complex of phosphate treatment. However, because of the lack of detailed studies, the impact of such pollution on the terrestrial wildlife inhabiting this area still remains unknown. In this work, we checked whether the proximity to Gabès-Ghannouche factory complex was associated with a decreased abundance of passerines breeding in the neighbouring oasis habitat. Overall, passerine abundance was found to decrease in the proximity of the factory complex, but this decrease was more pronounced in insectivorous species than in granivorous ones. The latter species seemed to be more dependent on vegetation structure. Moreover, we found that in the sites close to the factory complex, the studied passerine community was dominated by the Sparrow Passer domesticus × hispaniolensis, which seemed to be the less sensitive species to pollution. However, in the more distant sites, passerine abundance was more equitably distributed among species due to the increase in the densities of pollution-sensitive ones. Our findings give support to those reported in polluted European forest habitats and stress once again the usefulness of passerines as reliable biomonitors of polluted terrestrial environments.