Multiomic Metabolic Enrichment Network Analysis Reveals Metabolite–Protein Physical Interaction Subnetworks Altered in Cancer

Metabolism is recognized as an important driver of cancer progression and other complex diseases, but global metabolite profiling remains a challenge. Protein expression profiling is often a poor proxy since existing pathway enrichment models provide an incomplete mapping between the proteome and metabolism. To overcome these gaps, we introduce multiomic metabolic enrichment network analysis (MOMENTA), an integrative multiomic data analysis framework for more accurately deducing metabolic pathway changes from proteomics data alone in a gene set analysis context by leveraging protein interaction networks to extend annotated metabolic models. We apply MOMENTA to proteomic data from diverse cancer cell lines and human tumors to demonstrate its utility at revealing variation in metabolic pathway activity across cancer types, which we verify using independent metabolomics measurements. The novel metabolic networks we uncover in breast cancer and other tumors are linked to clinical outcomes, underscoring the pathophysiological relevance of the findings.     

Highly specialized Cretaceous beetle parasitoids (Ripiphoridae) identified with optimized visualization of microstructures

Extremely miniaturized longipedes insects (body length c. 0.3 mm) embedded in two pieces of Cretaceous amber from Myanmar are described and interpreted. Using inverted fluorescence and light microscopy for detailed analysis of microstructures, the inclusions were identified as primary larvae of the beetle family Ripiphoridae, subfamily Ripidiinae. While the structure of thoracic and abdominal segments including appendages corresponds well with the groundplan known in recent members of Ripidiinae, a curved prosternal ridge with prominent spines (each c. 5 μm), the reduced condition of stemmata and antennae and the lack of sharp mandibles are unique features within the entire family, apparently apomorphies of the longipedes larvae. A sinuate prosternal edge with a dense row of spines (prosternoctenidium) might be homologous with ‘head ctenidia’ in some previously described miniaturized conicocephalate larvae, but further investigation is needed. The morphological differences between the head of longipedes larvae and extant Ripidiinae are interpreted as adaptations to different groups of hosts and life strategies. Palaeoethology of the longipedes larvae is briefly discussed. In addition, the systematic placement of conicocephalate larvae from Canadian, Myanmar and Russian Cretaceous ambers, already interpreted by various authors as primary instars within Coleopterida (assigned to either Strepsiptera or to the coleopteran Tenebrionoidea: Ripiphoridae), is discussed.     

松辽盆地阿尔必期微体浮游植物新属种

该文描述了松辽盆地中白垩世阿尔必期泉头组三段的微体浮游植物化石1新属7新种,隶属于微咸水沟鞭藻类2属5新种(含4新亚种),淡水绿藻1属1种和疑源类1新属1新种。并对沟鞭藻 Ngktericysta Bint,1986进行了修订。     

松辽盆地白垩纪微体浮游植物群及其环境讨论

该文报道了松辽盆地白垩纪丰富的非海相微体浮游植物群,主要是沟鞭藻类及一些绿藻和疑源类;论述了藻类的生物地层特征,自下而上初步划分出10个组合带;结合微量元素和古地磁等资料,较详细地讨论了含微体浮游植物组段的沉积环境,认为松辽盆地在白垩纪至少遭受过两次重要的海侵(分别在青山口组一段及嫩江组一、二段沉积时期),导致古松辽湖泊五种不同水体环境的演替,指出微体浮游植物组合的变化是受古盐度、古温度和古水深等因素控制的。此外,对有关组段的地质时代也进行了讨论,进一步补充了新的浮游植物化石证据。     

氧化塘中细菌种群组成动态

对武汉地区氧化塘中的细菌数量、细菌种类、种群组成、优势种及群落多样性进行了初步研究。从氧化塘中分离的细菌经鉴定属于12个属,主要有假单胞菌属(Pseudomonas)、棒杆菌属(corynebacterium)、无色杆菌属(Achromobacter)和微杆菌属(Microbacterium),其它菌属是芽孢杆菌属(Bacillus)、色杆菌属(Chromobacterium)、短杆菌属(Brevibacterium)、葡萄球菌属(Staphylococcus)、微球菌属(Micrococcus)、黄杆菌属(Flavobacterium)、埃希氏菌属(Escherichia)和链球菌属(Streptococcus)。在5个小塘中,细菌数量、种群组成和群落多样性指数都有不同,这与各塘的污染程度有关。由此,多样性指数可用于监测氧化塘的净化效果。     

利用普通怯寄蝇防治菜粉蝶初探

1 前言 从外地引进寄蝇或人工助长当地寄蝇种类防治农林害虫,是有效的生防手段之一,国外已有很多成功的报道。King等(1981)在路易斯安娜州蔗田中人工大量释放螟利索寄蝇(Lixophaga diatraeae)成虫防治第1代小蔗杆草螟(Diatraea saccharalis),不同地区的寄生率分别达到4.1、8.7和35.7％;由于降低了农药的使用量,奇痣窄径茧蜂(Agathis stigmatera)的自然寄生率也相应提高,很好地控制了蔗田害虫的发生。在寄蝇的田间释放技术方面,国外还没有详细的报道。在我国,利用寄蝇防治害虫的工作也是刚刚起步,很多具体问题有待于进一步研究。     

菘蓝多倍体育种的研究

本文报道药用植物菘蓝(Isatis indigotica Foft.)同源四倍体的诱发、鉴定、选育的研究。用0.05-0.5％浓度的秋水仙碱水溶液处理萌发的种子,或用0.05-0.3％浓度的此溶液处理幼苗的生长点,均可以获得四倍体植株。最适宜的处理时间为6-12小时。除用直接的细胞学技术鉴定多倍体植株外,一些重要的间接鉴定特征,如叶表皮保卫细胞中叶绿体数,花粉沟数可作为鉴定本种多倍体植株的可靠指标。比较了四倍体植株和二倍体亲本的生物学特性。经过数代选育,获得了性状稳定、繁殖力正常、根与叶中活性成分均有较大幅度提高、生产性能良好的品系。     

荧光假单胞菌抗噬菌体菌株的选育

本实验从荧光假单胞菌（Ｐｓｅｕｄｏｍｏｎａｓｆｌｕｏｒｅｓｃｅｎｓ）ＡＳ—３菌株的不正常发酵液中分离到一种噬菌体,将其命名为ＰＦＡＳ。ＡＳ—３菌株能利用葡萄糖发酵产生Ｄ－异维生素Ｃ的前体物质２－酮基－Ｄ－葡萄糖酸。电镜观察表明ＰＦＡＳ噬菌体呈蝌蚪形,具有直径为６６ｎｍ的六角形头部及长１１７ｎｍ的尾部。通过紫外线诱变及自然选育两种途径,配合简便有效的初筛方法,经多次分离、纯化、复筛最终在摇并发酵试验中获得６株产量稳定地高于对照敏感菌的抗噬菌体菌株,可望用于生产。